Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 2.5e-139 498.8 256 100.0
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 6.7e-113 411.0 227 91.6
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 4.1e-110 401.7 236 85.6
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 7.0e-110 401.0 224 89.3
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 9.1e-110 400.6 223 88.8
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 1.7e-108 396.4 252 82.1
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 6.5e-108 394.4 223 88.3
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 1.9e-107 392.9 222 86.9
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 2.5e-107 392.5 223 88.3
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 2.5e-107 392.5 222 86.9
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 2.5e-107 392.5 222 86.9
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 2.5e-107 392.5 255 82.4
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 9.4e-107 390.6 241 82.2
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 2.1e-106 389.4 224 87.1
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 3.6e-106 388.7 246 81.7
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 1.8e-105 386.3 223 85.7
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 3.0e-105 385.6 225 84.4
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 6.7e-105 384.4 222 86.9
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 1.2e-104 383.6 226 86.3
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 1.2e-104 383.6 223 84.3
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 1.5e-104 383.3 223 85.2
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 2.0e-104 382.9 223 84.8
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 2.0e-104 382.9 221 86.0
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 2.0e-104 382.9 223 83.9
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 2.0e-104 382.9 220 86.8
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 2.6e-104 382.5 223 87.0
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 3.3e-104 382.1 224 84.8
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 3.3e-104 382.1 223 83.9
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 5.7e-104 381.3 213 88.7
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 5.7e-104 381.3 221 85.5
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 9.7e-104 380.6 222 85.6
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 1.3e-103 380.2 219 85.8
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 1.7e-103 379.8 213 88.3
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 6.3e-103 377.9 213 87.3
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 1.4e-102 376.7 221 83.3
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 1.4e-102 376.7 219 84.9
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 2.4e-102 375.9 220 85.0
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 7.0e-102 374.4 222 82.0
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 9.1e-102 374.0 222 82.9
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 9.1e-102 374.0 213 86.9
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 1.2e-101 373.6 220 85.0
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 1.6e-101 373.2 216 85.6
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.6e-101 373.2 258 75.6
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 4.5e-101 371.7 219 83.6
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 5.9e-101 371.3 219 84.5
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 5.9e-101 371.3 219 84.5
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 1.3e-100 370.2 213 85.0
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 2.9e-100 369.0 223 84.8
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 5.0e-100 368.2 237 79.7
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 1.1e-99 367.1 223 83.9
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 1.5e-99 366.7 222 79.7
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 2.5e-99 365.9 220 83.2
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 2.5e-99 365.9 223 83.4
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 3.2e-99 365.5 220 80.5
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 5.5e-99 364.8 220 80.9
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 7.2e-99 364.4 223 83.0
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 9.4e-99 364.0 220 80.9
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 2.1e-98 362.8 219 80.8
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 2.7e-98 362.5 223 79.4
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 2.7e-98 362.5 223 79.4
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 2.7e-98 362.5 220 80.5
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 4.7e-98 361.7 220 80.0
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.8e-97 359.8 220 79.5
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 3.0e-97 359.0 230 76.5
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 5.2e-97 358.2 219 79.5
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 5.2e-97 358.2 266 71.1
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 5.2e-97 358.2 213 81.7
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.2e-96 357.1 220 78.6
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 7.5e-96 354.4 215 80.9
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 9.8e-96 354.0 224 78.6
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 1.7e-95 353.2 219 79.5
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 2.8e-95 352.4 220 79.1
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 6.3e-95 351.3 215 79.5
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 1.1e-94 350.5 231 75.3
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 1.4e-94 350.1 221 77.4
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 3.1e-94 349.0 222 78.4
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 4.1e-94 348.6 215 79.1
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 5.4e-94 348.2 221 78.7
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 5.4e-94 348.2 215 80.5
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 2.7e-93 345.9 220 77.3
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 3.5e-93 345.5 227 77.5
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 3.5e-93 345.5 213 81.7
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 4.5e-93 345.1 220 77.7
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 1.0e-92 344.0 223 79.4
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 1.7e-92 343.2 215 77.2
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 3.3e-91 339.0 223 74.0
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 5.5e-91 338.2 224 73.2
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 7.2e-91 337.8 268 65.7
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 2.8e-90 335.9 223 75.8
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 6.1e-90 334.7 224 73.7
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 8.0e-90 334.3 226 73.0
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 8.0e-90 334.3 220 73.6
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 2.3e-89 332.8 220 73.2
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 2.3e-89 332.8 220 73.2
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 3.0e-89 332.4 220 73.6
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 4.0e-89 332.0 220 75.0
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 4.0e-89 332.0 220 75.0
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 5.2e-89 331.6 223 71.7
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 5.2e-89 331.6 220 72.7
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 5.2e-89 331.6 223 71.3
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 8.9e-89 330.9 222 73.4
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 2.0e-88 329.7 224 77.7
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 3.4e-88 328.9 217 76.0
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 7.5e-88 327.8 210 75.2
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 9.8e-88 327.4 185 87.0
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 1.0e-81 307.4 223 68.2
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.0e-81 307.4 217 70.5
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 4.0e-81 305.4 214 70.1
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 1.3e-79 300.4 213 69.0
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 2.2e-79 299.7 217 68.7
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 4.9e-79 298.5 177 83.1
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 3.2e-78 295.8 215 69.8
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 1.7e-76 290.0 217 67.3
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 6.6e-76 288.1 218 64.7
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.0e-72 276.6 180 74.4
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 8.1e-66 254.6 223 59.6
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 3.4e-64 249.2 141 87.2
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 4.0e-57 225.7 128 86.7
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 4.4e-56 222.2 229 51.1
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 9.9e-56 221.1 123 86.2
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 2.2e-55 219.9 132 84.1
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 2.4e-54 216.5 130 82.3
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 7.1e-54 214.9 122 86.1
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 1.7e-47 193.7 159 66.0
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 3.9e-44 182.6 130 72.3
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.4e-41 174.1 124 68.5
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 2.4e-41 173.3 115 73.9
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 9.9e-40 167.9 107 76.6
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 8.4e-39 164.9 92 89.1
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 1.9e-38 163.7 95 85.3
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 6.2e-34 148.7 91 80.2
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 4.0e-33 146.0 95 70.5
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 3.8e-31 139.4 202 41.1
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 5.5e-30 135.6 164 43.9
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 3.0e-28 129.8 78 79.5
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 3.9e-28 129.4 189 38.6
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 1.9e-27 127.1 189 38.6
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 4.3e-27 125.9 94 67.0
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 1.3e-26 124.4 187 38.5
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 3.1e-25 119.8 190 41.1
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 4.0e-25 119.4 215 35.3
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 5.3e-25 119.0 73 79.5
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 1.3e-23 114.4 203 36.9
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 1.7e-23 114.0 71 73.2
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 2.2e-23 113.6 87 66.7
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 8.4e-23 111.7 88 68.2
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 2.5e-22 110.2 225 34.7
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 4.6e-21 105.9 194 36.6
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 7.9e-21 105.1 83 66.3
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 1.3e-20 104.4 60 83.3
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 5.7e-19 99.0 170 34.7
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 9.7e-19 98.2 63 77.8
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 9.7e-19 98.2 58 82.8
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 9.7e-19 98.2 60 76.7
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 3.1e-17 93.2 59 79.7
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 5.3e-17 92.4 53 84.9
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 2.0e-16 90.5 70 62.9
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 1.1e-14 84.7 46 84.8
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 3.2e-14 83.2 68 61.8
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 1.4e-12 77.8 91 51.6
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 5.1e-12 75.9 91 49.5
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 9.7e-11 71.6 68 54.4
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 1.7e-10 70.9 65 55.4
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 2.2e-10 70.5 64 56.2
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 2.8e-10 70.1 66 57.6
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 6.3e-10 68.9 59 59.3
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 2.4e-09 67.0 57 59.6
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 2.0e-08 63.9 39 82.1
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 2.2e-07 60.5 48 62.5


User provided reference genes

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