Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 2759.9 1397 100.0
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 2613.6 1328 99.6
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1796.6 1319 71.4
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1776.9 1322 70.7
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1635.2 1248 70.3
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 0.0e+00 1629.4 1472 61.1
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 0.0e+00 1624.0 1311 67.0
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1492.6 1341 61.3
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1408.3 1343 58.5
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1403.3 1349 57.3
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1400.2 1192 64.3
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 0.0e+00 1381.3 1343 58.2
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1379.4 1324 57.4
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1376.3 1326 57.9
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1360.5 1353 56.2
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1350.5 1348 57.0
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1332.8 1339 56.3
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1330.9 1327 55.5
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1326.6 1325 55.0
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1322.8 1325 55.5
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1310.0 1345 54.6
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1305.8 1345 53.5
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1299.3 1345 55.0
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1297.0 1344 54.2
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 0.0e+00 1294.3 1347 53.2
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1291.9 1362 52.7
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 0.0e+00 1280.0 1335 53.7
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 0.0e+00 1270.8 1356 52.6
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 0.0e+00 1251.9 1324 53.5
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1245.7 1356 52.6
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 0.0e+00 1243.8 1319 53.8
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 0.0e+00 1204.9 1272 54.4
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1201.4 1327 52.9
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1198.0 1372 51.6
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1187.9 1354 51.8
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 0.0e+00 1182.2 1352 50.0
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 0.0e+00 1179.1 1334 49.9
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 0.0e+00 1174.8 1334 50.1
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1173.3 1356 51.0
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 0.0e+00 1172.9 1355 51.3
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 0.0e+00 1172.1 1334 49.6
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1171.0 1355 51.3
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 0.0e+00 1165.2 1327 49.4
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1163.3 1257 53.1
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 0.0e+00 1160.2 1344 49.3
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 0.0e+00 1158.7 1289 50.3
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 0.0e+00 1151.3 1238 52.0
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 0.0e+00 1137.9 1343 48.6
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 0.0e+00 1110.9 1318 49.2
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 0.0e+00 1109.0 1282 50.2
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 0.0e+00 1089.3 1355 47.5
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 4.8e-311 1071.6 1335 47.3
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 3.1e-305 1052.4 1331 48.2
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 5.4e-305 1051.6 1337 47.4
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 2.5e-302 1042.7 1332 46.9
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 4.2e-302 1042.0 1320 47.7
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 3.4e-299 1032.3 1321 47.5
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 2.4e-297 1026.2 1348 45.8
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 9.2e-297 1024.2 1307 47.4
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 2.7e-296 1022.7 1307 47.2
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 3.5e-296 1022.3 1320 45.9
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 3.3e-294 1015.8 1317 47.0
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 2.3e-292 1009.6 1322 46.7
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 4.4e-291 1005.4 1223 47.7
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 4.9e-290 1001.9 1375 44.4
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 1.9e-289 1000.0 1323 45.9
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 5.6e-286 988.4 1328 46.3
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 1.7e-282 976.9 1318 45.1
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 6.4e-282 974.9 1322 45.8
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 3.5e-280 969.1 1326 45.9
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 6.0e-272 941.8 1342 43.2
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 5.6e-270 935.3 1347 43.4
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 4.3e-254 882.5 1312 42.6
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 1.4e-252 877.5 1303 42.4
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 1.1e-246 857.8 1340 42.1
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 1.8e-244 850.5 1325 42.1
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 5.3e-244 849.0 1346 40.8
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 2.2e-234 817.0 697 65.1
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 1.3e-226 791.2 1299 40.5
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.1e-217 761.5 1344 38.5
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 2.5e-217 760.4 1146 41.4
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 5.5e-217 759.2 1347 39.2
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 9.7e-214 748.4 1295 38.4
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 7.0e-212 742.3 714 58.8
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 2.9e-210 736.9 1304 40.0
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 6.1e-208 729.2 1090 42.4
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 3.0e-207 726.9 693 59.2
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 1.7e-202 711.1 645 58.3
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 5.2e-199 699.5 1301 36.6
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 3.1e-196 690.3 1133 38.8
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 2.7e-192 677.2 1241 38.2
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 3.0e-183 647.1 1125 37.7
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 1.2e-182 645.2 1329 34.9
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 9.8e-182 642.1 700 52.6
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 1.3e-181 641.7 1272 34.8
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 8.3e-173 612.5 569 57.6
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 9.9e-150 535.8 715 47.3
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 3.1e-143 514.2 616 48.7
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 5.3e-143 513.5 684 48.5
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 4.9e-133 480.3 789 39.7
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 6.7e-130 469.9 712 44.1
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 1.5e-129 468.8 1345 32.3
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 2.8e-128 464.5 800 39.1
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.4e-127 462.2 784 36.9
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 8.2e-104 383.3 697 38.2
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 2.4e-95 355.1 372 52.4
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 5.0e-93 347.4 818 30.7
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 9.7e-89 333.2 797 31.2
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.0e-77 296.6 883 30.7
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.0e-74 286.6 589 32.3
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 2.1e-59 235.7 792 25.4
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.7e-45 189.5 292 40.8
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 1.5e-41 176.4 271 41.3
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 3.8e-40 171.8 598 32.4
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 6.0e-38 164.5 262 36.3
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 1.9e-36 159.5 117 70.1
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 4.7e-35 154.8 573 29.5
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 4.6e-30 138.3 267 34.8
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 1.1e-26 127.1 495 26.5
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 6.7e-21 107.8 275 34.9
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 6.7e-21 107.8 275 34.9
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 7.4e-20 104.4 588 25.7
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 2.8e-19 102.4 376 25.0
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 6.2e-19 101.3 142 39.4
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 3.1e-18 99.0 580 26.7
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 4.0e-18 98.6 580 26.7
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 2.6e-17 95.9 514 26.8
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 3.4e-17 95.5 252 31.7
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 6.4e-16 91.3 580 26.6
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 9.3e-15 87.4 611 25.2
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 2.1e-14 86.3 562 25.6
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 2.1e-14 86.3 186 32.8
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 3.5e-14 85.5 550 25.6
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 3.5e-14 85.5 550 25.6
Sabra05G0109200 Salix brachista HOM05D006144 ORTHO05D006357 7.9e-14 84.3 202 38.6
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 2.1e-11 76.3 135 36.3
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 4.8e-11 75.1 583 25.2
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 1.4e-10 73.6 459 23.1
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 7.6e-09 67.8 299 20.4
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 9.3e-07 60.8 80 43.8
GSVIVG01002722001 Vitis vinifera HOM05D006144 ORTHO05D006357 1.2e-06 60.5 101 39.6
SEGI_01818 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 2.7e-06 59.3 90 36.7
Nn6g33590 Nelumbo nucifera HOM05D052452 ORTHO05D006357 7.9e-06 57.8 115 40.9


User provided reference genes

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