Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.4e-43 179.1 81 100.0
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 9.2e-32 139.8 135 54.8
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.6e-28 129.0 56 100.0
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 6.8e-27 123.6 56 92.9
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.2e-26 122.9 56 92.9
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 4.4e-26 120.9 56 89.3
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 5.7e-26 120.6 58 87.9
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 7.5e-26 120.2 56 91.1
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 1.7e-25 119.0 56 89.3
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.7e-25 119.0 56 85.7
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 2.2e-25 118.6 56 89.3
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 2.2e-25 118.6 61 82.0
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 2.9e-25 118.2 56 87.5
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 2.9e-25 118.2 56 87.5
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 3.7e-25 117.9 56 89.3
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 3.7e-25 117.9 56 89.3
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 3.7e-25 117.9 56 89.3
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 3.7e-25 117.9 56 89.3
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 3.7e-25 117.9 56 89.3
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 4.9e-25 117.5 56 89.3
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 4.9e-25 117.5 56 85.7
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 6.4e-25 117.1 56 89.3
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 6.4e-25 117.1 56 89.3
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 6.4e-25 117.1 56 91.1
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 8.3e-25 116.7 56 87.5
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 8.3e-25 116.7 56 87.5
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 1.1e-24 116.3 56 89.3
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 1.1e-24 116.3 56 87.5
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.1e-24 116.3 56 85.7
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 1.4e-24 115.9 56 85.7
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 1.4e-24 115.9 56 89.3
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 1.4e-24 115.9 56 89.3
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 1.8e-24 115.5 56 85.7
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 1.8e-24 115.5 56 87.5
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 1.8e-24 115.5 56 87.5
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 2.4e-24 115.2 56 85.7
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 2.4e-24 115.2 56 89.3
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 2.4e-24 115.2 56 87.5
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.4e-24 115.2 56 85.7
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 2.4e-24 115.2 56 85.7
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 2.4e-24 115.2 56 85.7
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 2.4e-24 115.2 56 85.7
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 2.4e-24 115.2 56 83.9
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 3.2e-24 114.8 56 85.7
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 3.2e-24 114.8 56 87.5
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 3.2e-24 114.8 56 87.5
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 3.2e-24 114.8 56 87.5
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 3.2e-24 114.8 56 87.5
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 4.1e-24 114.4 56 87.5
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 4.1e-24 114.4 56 83.9
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 4.1e-24 114.4 56 85.7
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 5.4e-24 114.0 56 87.5
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 5.4e-24 114.0 56 87.5
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 7.0e-24 113.6 59 79.7
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 7.0e-24 113.6 56 82.1
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 7.0e-24 113.6 56 83.9
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 9.2e-24 113.2 56 87.5
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 9.2e-24 113.2 56 82.1
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 1.2e-23 112.8 56 83.9
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 1.2e-23 112.8 57 86.0
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 1.2e-23 112.8 56 83.9
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.2e-23 112.8 56 82.1
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 1.2e-23 112.8 56 82.1
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 1.2e-23 112.8 56 82.1
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 1.6e-23 112.5 56 87.5
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.6e-23 112.5 56 82.1
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.6e-23 112.5 56 82.1
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 1.6e-23 112.5 56 82.1
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.6e-23 112.5 56 82.1
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.0e-23 112.1 56 82.1
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.0e-23 112.1 56 82.1
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 2.0e-23 112.1 56 82.1
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 2.7e-23 111.7 56 85.7
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 2.7e-23 111.7 56 80.4
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.7e-23 111.7 56 83.9
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 3.5e-23 111.3 56 82.1
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 3.5e-23 111.3 56 85.7
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 3.5e-23 111.3 56 82.1
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 5.9e-23 110.5 56 80.4
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 5.9e-23 110.5 56 80.4
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 1.0e-22 109.8 56 82.1
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.0e-22 109.8 57 78.9
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 1.0e-22 109.8 56 80.4
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 1.3e-22 109.4 56 82.1
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 1.3e-22 109.4 56 78.6
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 1.7e-22 109.0 56 78.6
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 2.3e-22 108.6 56 78.6
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 3.0e-22 108.2 56 78.6
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 3.0e-22 108.2 56 78.6
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 3.0e-22 108.2 56 78.6
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 3.0e-22 108.2 56 78.6
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 3.0e-22 108.2 56 78.6
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 3.0e-22 108.2 56 78.6
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 3.0e-22 108.2 56 80.4
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 3.0e-22 108.2 56 78.6
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 3.0e-22 108.2 56 78.6
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 3.0e-22 108.2 56 78.6
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 3.9e-22 107.8 103 54.4
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 5.0e-22 107.5 56 80.4
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 1.1e-21 106.3 56 78.6
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 1.1e-21 106.3 56 76.8
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 1.1e-21 106.3 56 78.6
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 1.5e-21 105.9 56 78.6
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 1.5e-21 105.9 56 76.8
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.5e-21 105.9 56 78.6
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.3e-21 104.8 56 75.0
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 4.3e-21 104.4 56 78.6
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 4.3e-21 104.4 56 75.0
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 7.3e-21 103.6 56 75.0
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 7.3e-21 103.6 56 75.0
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 1.2e-20 102.8 56 73.2
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 3.1e-19 98.2 97 53.6
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 8.9e-19 96.7 44 95.5
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 8.9e-19 96.7 56 71.4
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 2.0e-18 95.5 56 64.3
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 5.8e-18 94.0 56 69.6
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 4.9e-17 90.9 39 94.9
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 6.4e-17 90.5 53 71.7
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.4e-16 88.6 56 67.9
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.4e-16 88.6 56 67.9
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 3.2e-16 88.2 46 76.1
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 1.6e-15 85.9 44 81.8
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 7.8e-15 83.6 44 79.5
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 1.0e-14 83.2 44 81.8
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 5.0e-14 80.9 67 55.2
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 8.6e-14 80.1 56 55.4
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 3.6e-12 74.7 44 68.2
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 6.2e-12 73.9 59 62.7
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 1.1e-11 73.2 56 51.8
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 2.3e-11 72.0 56 46.4
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 3.1e-11 71.6 31 93.5
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 2.6e-10 68.6 29 96.6
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 2.2e-09 65.5 30 86.7
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 6.4e-09 63.9 29 89.7
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 8.3e-09 63.5 56 51.8
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 1.1e-08 63.2 56 51.8
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 1.6e-07 59.3 67 44.8
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 2.3e-06 55.5 56 50.0


User provided reference genes

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