Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.0e-79 298.9 140 100.0
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.6e-34 149.1 78 92.3
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.8e-34 147.9 78 92.3
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.8e-34 147.9 78 92.3
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.8e-34 147.9 78 92.3
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.8e-34 147.9 78 92.3
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.7e-33 146.4 78 89.7
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 2.2e-33 146.0 78 91.0
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 2.9e-33 145.6 78 89.7
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 3.8e-33 145.2 82 85.4
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 4.9e-33 144.8 78 89.7
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 8.4e-33 144.1 82 85.4
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 8.4e-33 144.1 78 87.2
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 1.1e-32 143.7 78 87.2
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 1.4e-32 143.3 78 87.2
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 1.4e-32 143.3 78 88.5
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 1.4e-32 143.3 78 88.5
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 1.4e-32 143.3 78 88.5
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 1.4e-32 143.3 78 88.5
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.4e-32 143.3 78 88.5
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 1.9e-32 142.9 78 89.7
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 1.9e-32 142.9 78 85.9
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 1.9e-32 142.9 78 85.9
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 2.4e-32 142.5 78 88.5
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 2.4e-32 142.5 78 87.2
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 3.2e-32 142.1 78 87.2
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 3.2e-32 142.1 78 85.9
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 3.2e-32 142.1 78 85.9
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 3.2e-32 142.1 78 85.9
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 4.2e-32 141.7 78 84.6
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 4.2e-32 141.7 78 84.6
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 4.2e-32 141.7 78 85.9
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 4.2e-32 141.7 78 85.9
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 4.2e-32 141.7 78 85.9
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 4.2e-32 141.7 78 85.9
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 5.4e-32 141.4 78 85.9
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 5.4e-32 141.4 78 84.6
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 5.4e-32 141.4 78 84.6
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 7.1e-32 141.0 78 84.6
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 7.1e-32 141.0 78 85.9
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 7.1e-32 141.0 78 84.6
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 7.1e-32 141.0 78 85.9
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 7.1e-32 141.0 78 84.6
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 9.3e-32 140.6 78 84.6
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 9.3e-32 140.6 78 85.9
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 1.2e-31 140.2 78 84.6
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 1.2e-31 140.2 78 83.3
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 1.2e-31 140.2 86 79.1
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 1.2e-31 140.2 78 84.6
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 1.2e-31 140.2 78 84.6
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 1.2e-31 140.2 78 84.6
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.6e-31 139.8 78 83.3
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 1.6e-31 139.8 78 84.6
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 2.1e-31 139.4 78 84.6
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 2.7e-31 139.0 78 83.3
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 2.7e-31 139.0 78 85.9
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 2.7e-31 139.0 78 85.9
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 2.7e-31 139.0 78 84.6
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.6e-31 138.3 78 83.3
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 4.6e-31 138.3 78 84.6
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 6.0e-31 137.9 78 83.3
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 6.0e-31 137.9 78 85.9
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 7.9e-31 137.5 78 83.3
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 7.9e-31 137.5 78 83.3
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 1.0e-30 137.1 78 83.3
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 1.0e-30 137.1 78 83.3
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 1.0e-30 137.1 78 83.3
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 1.0e-30 137.1 78 84.6
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 1.3e-30 136.7 78 83.3
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 1.8e-30 136.3 78 80.8
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 5.1e-30 134.8 78 83.3
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 5.1e-30 134.8 78 83.3
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 5.1e-30 134.8 78 83.3
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 5.1e-30 134.8 78 83.3
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 5.1e-30 134.8 78 83.3
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 5.1e-30 134.8 78 83.3
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 5.1e-30 134.8 78 83.3
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 5.1e-30 134.8 78 83.3
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 5.1e-30 134.8 78 83.3
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 5.1e-30 134.8 78 83.3
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 5.1e-30 134.8 78 82.1
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 5.1e-30 134.8 78 82.1
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 6.7e-30 134.4 78 83.3
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 6.7e-30 134.4 78 79.5
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 6.7e-30 134.4 78 82.1
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 8.7e-30 134.0 78 82.1
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 1.1e-29 133.7 78 80.8
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 1.9e-29 132.9 78 82.1
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 1.9e-29 132.9 78 82.1
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 1.9e-29 132.9 78 82.1
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 1.9e-29 132.9 78 82.1
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 1.9e-29 132.9 78 82.1
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 1.9e-29 132.9 78 82.1
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 1.9e-29 132.9 78 78.2
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.3e-29 132.1 78 82.1
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.3e-29 132.1 78 82.1
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.3e-29 132.1 78 82.1
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 4.3e-29 131.7 78 82.1
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 5.6e-29 131.3 78 78.2
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 9.6e-29 130.6 105 62.9
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.3e-27 124.8 83 74.7
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 9.0e-27 124.0 78 79.5
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 1.3e-25 120.2 78 74.4
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 1.1e-24 117.1 77 67.5
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 5.5e-24 114.8 78 66.7
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.1e-23 112.8 78 61.5
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 3.5e-23 112.1 78 61.5
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 3.5e-23 112.1 78 73.1
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 6.0e-23 111.3 78 73.1
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 6.0e-23 111.3 78 73.1
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.3e-22 109.4 78 59.0
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 9.0e-19 97.4 78 60.3
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.5e-18 96.7 97 53.6
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.4e-18 95.5 105 45.7
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.9e-17 91.7 106 43.4
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.2e-15 87.0 75 56.0
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.1e-15 86.3 70 55.7
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 2.7e-15 85.9 46 89.1
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.5e-15 85.5 47 83.0
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 6.0e-15 84.7 104 42.3
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.3e-14 83.6 44 90.9
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 5.1e-14 81.6 47 80.9
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 8.7e-14 80.9 47 80.9
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 1.5e-13 80.1 44 84.1
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 9.6e-13 77.4 44 79.5
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 2.1e-12 76.3 47 74.5
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 3.1e-11 72.4 38 89.5
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 4.1e-11 72.0 34 91.2
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 4.1e-11 72.0 38 86.8
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 1.0e-09 67.4 78 47.4
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 6.5e-09 64.7 40 77.5
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.2e-08 62.4 78 46.2
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.1e-07 59.7 38 71.1
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 6.1e-07 58.2 33 81.8
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 1.8e-06 56.6 25 92.0
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.8e-06 56.6 78 44.9


User provided reference genes

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