Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 3.9e-210 734.6 378 100.0
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 1.2e-169 600.1 377 82.5
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 9.5e-164 580.5 387 77.3
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 3.6e-163 578.6 412 73.8
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 1.5e-161 573.2 347 84.1
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 2.9e-160 568.9 388 76.0
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 2.0e-158 562.8 349 81.1
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 1.9e-156 556.2 355 78.6
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 1.2e-153 547.0 385 74.3
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 4.4e-153 545.0 349 78.5
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 3.7e-152 542.0 299 88.6
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 4.9e-152 541.6 375 74.1
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 1.1e-151 540.4 383 73.9
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 3.0e-149 532.3 304 84.9
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 1.1e-148 530.4 360 75.0
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 2.5e-148 529.3 386 72.0
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 5.6e-148 528.1 348 79.3
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 1.2e-147 526.9 337 77.7
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 2.1e-147 526.2 347 76.7
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 3.6e-147 525.4 348 77.0
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 7.5e-145 517.7 370 73.5
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 1.7e-144 516.5 374 71.4
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 1.1e-143 513.8 387 70.0
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 2.4e-143 512.7 348 75.9
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 4.1e-143 511.9 381 69.3
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 4.1e-143 511.9 328 77.4
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 4.1e-143 511.9 324 77.8
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 7.1e-143 511.1 379 70.7
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 9.2e-143 510.8 325 77.5
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 4.6e-142 508.4 374 68.7
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.3e-141 506.9 348 75.6
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 1.7e-141 506.5 328 76.8
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 2.3e-141 506.1 330 76.1
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 8.6e-141 504.2 378 70.4
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 1.5e-140 503.4 348 72.1
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 3.3e-140 502.3 288 85.4
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 4.3e-140 501.9 298 81.9
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 5.6e-140 501.5 349 71.9
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 9.5e-140 500.7 369 69.4
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 1.6e-139 500.0 371 70.1
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 1.6e-139 500.0 374 69.8
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 2.1e-139 499.6 318 76.7
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 2.1e-139 499.6 355 69.3
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 2.1e-139 499.6 344 73.8
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 3.6e-139 498.8 304 80.9
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.4e-138 496.9 354 73.2
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 1.8e-138 496.5 381 67.5
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 8.9e-138 494.2 344 72.4
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 1.2e-137 493.8 372 68.8
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 1.2e-137 493.8 384 67.2
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.5e-137 493.4 355 72.7
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 2.6e-137 492.7 325 75.1
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 4.4e-137 491.9 381 66.9
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 2.4e-135 486.1 344 71.8
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 4.1e-135 485.3 380 66.8
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 9.2e-135 484.2 300 79.7
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 9.2e-135 484.2 323 73.4
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 4.6e-134 481.9 347 71.2
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 7.8e-134 481.1 319 74.9
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.3e-133 480.3 315 76.2
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 3.9e-133 478.8 349 69.1
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 5.1e-133 478.4 336 69.9
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 1.1e-132 477.2 326 70.9
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 1.5e-132 476.9 346 73.1
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 3.3e-132 475.7 329 70.2
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 4.3e-132 475.3 329 70.5
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 7.3e-132 474.6 378 68.5
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 1.6e-131 473.4 352 72.2
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 3.6e-131 472.2 329 69.6
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 3.1e-130 469.2 318 70.4
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 1.2e-129 467.2 312 74.7
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.4e-129 465.7 297 74.7
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 5.8e-129 464.9 342 68.4
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.3e-128 463.8 373 63.0
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 1.7e-128 463.4 357 66.7
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 2.9e-128 462.6 337 70.0
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 4.9e-128 461.8 319 70.5
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 4.9e-128 461.8 319 70.5
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 1.9e-127 459.9 445 59.1
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 2.4e-127 459.5 356 66.0
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.2e-126 457.2 356 65.7
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 1.0e-125 454.1 372 63.2
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 3.9e-125 452.2 382 63.6
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 2.5e-124 449.5 313 72.5
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 2.5e-124 449.5 350 64.6
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 1.6e-123 446.8 318 70.4
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 2.1e-123 446.4 374 64.2
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 2.1e-123 446.4 358 62.8
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 5.8e-121 438.3 360 60.6
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 6.7e-117 424.9 250 84.0
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.9e-116 423.3 374 61.8
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 1.6e-115 420.2 270 73.7
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 8.1e-115 417.9 270 74.8
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 8.1e-115 417.9 270 74.8
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 9.9e-113 411.0 297 66.0
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 1.3e-107 394.0 299 68.6
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 2.5e-100 369.8 265 72.5
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 3.7e-99 365.9 294 65.6
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 1.1e-98 364.4 280 61.4
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 2.0e-97 360.1 325 56.9
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 1.4e-95 354.0 295 58.6
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 5.5e-95 352.1 291 55.7
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.3e-93 347.4 292 54.8
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 1.8e-93 347.1 291 55.0
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 5.1e-93 345.5 291 54.3
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 8.2e-91 338.2 292 54.5
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 1.1e-90 337.8 292 54.8
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 3.1e-90 336.3 290 54.8
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 6.9e-90 335.1 291 52.9
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 2.6e-89 333.2 292 53.1
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 3.4e-89 332.8 289 57.8
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 4.5e-89 332.4 292 53.1
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 5.9e-89 332.0 217 72.8
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 7.7e-89 331.6 292 54.5
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.3e-88 330.9 292 53.4
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.7e-88 330.5 298 53.0
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 3.8e-88 329.3 292 54.8
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 5.0e-88 328.9 299 52.2
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 6.5e-88 328.6 292 51.7
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 6.5e-88 328.6 292 52.4
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.4e-87 327.4 291 53.3
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 9.4e-87 324.7 272 55.5
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.1e-86 323.6 291 50.9
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 3.6e-86 322.8 292 52.7
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 3.6e-86 322.8 292 52.7
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 4.6e-86 322.4 297 51.2
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 6.1e-86 322.0 290 52.1
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 7.9e-86 321.6 292 53.1
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.0e-85 321.2 292 54.1
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 1.4e-85 320.9 212 77.4
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 1.8e-85 320.5 291 51.2
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.8e-85 320.5 290 52.1
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 3.9e-85 319.3 292 52.1
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 2.0e-84 317.0 300 53.0
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.0e-84 317.0 292 50.7
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 2.6e-84 316.6 293 51.9
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.6e-84 316.6 293 52.9
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 3.3e-84 316.2 300 52.7
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 4.1e-82 309.3 293 50.5
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 1.7e-80 303.9 292 50.0
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 1.9e-79 300.4 294 46.9
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.2e-78 297.7 279 50.9
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 1.8e-77 293.9 276 50.7
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 1.0e-72 278.1 300 49.3
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 1.3e-72 277.7 291 53.6
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 1.5e-71 274.2 286 49.3
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 1.2e-70 271.2 279 49.8
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 5.2e-69 265.8 349 40.1
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 4.5e-65 252.7 235 60.4
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 3.8e-64 249.6 244 49.6
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.7e-57 226.9 219 50.7
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 9.5e-55 218.4 298 39.9
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 2.8e-54 216.9 190 54.2
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 2.8e-54 216.9 190 54.2
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 1.0e-53 214.9 178 61.2
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 6.6e-48 195.7 323 35.9
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 1.9e-39 167.5 128 53.9
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 3.6e-38 163.3 148 53.4
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 1.4e-37 161.4 128 52.3
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 1.4e-37 161.4 128 52.3
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.4e-34 150.6 291 32.3
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.3e-32 144.1 83 84.3
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 1.5e-31 141.4 111 52.3
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 9.5e-31 138.7 149 49.7
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 3.6e-22 110.2 94 61.7
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 7.6e-20 102.4 298 28.2
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 1.8e-13 81.3 56 73.2


User provided reference genes

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