Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-71 273.1 131 100.0
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.5e-68 260.4 126 100.0
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.4e-50 203.0 123 79.7
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 4.1e-50 201.4 125 78.4
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 1.1e-42 176.8 125 72.8
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 1.9e-42 176.0 125 71.2
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-41 173.3 124 73.4
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 6.0e-41 171.0 125 69.6
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 2.1e-38 162.5 125 67.2
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 2.1e-38 162.5 125 67.2
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 2.6e-36 155.6 125 66.4
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 1.7e-35 152.9 125 60.0
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 3.8e-35 151.8 125 63.2
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 6.4e-35 151.0 125 61.6
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 8.4e-35 150.6 125 63.2
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 1.4e-34 149.8 125 63.2
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.4e-34 149.8 125 64.0
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.9e-34 149.4 125 62.4
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 1.9e-34 149.4 125 61.6
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 3.2e-34 148.7 123 63.4
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 4.2e-34 148.3 125 60.8
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 5.4e-34 147.9 125 61.6
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 5.4e-34 147.9 125 60.8
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 9.3e-34 147.1 126 60.3
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 1.6e-33 146.4 126 58.7
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 1.6e-33 146.4 125 58.4
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 2.7e-33 145.6 128 58.6
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 1.0e-32 143.7 125 62.4
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 3.9e-32 141.7 127 63.0
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 6.6e-32 141.0 125 60.8
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 6.6e-32 141.0 129 60.5
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 6.6e-32 141.0 128 64.8
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 6.6e-32 141.0 127 60.6
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 8.7e-32 140.6 123 59.3
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 8.7e-32 140.6 125 60.0
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 7.4e-31 137.5 119 64.7
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 7.4e-31 137.5 127 58.3
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 9.6e-31 137.1 127 59.1
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 1.3e-30 136.7 119 64.7
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 1.6e-30 136.3 127 57.5
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 1.6e-30 136.3 127 57.5
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 2.1e-30 136.0 126 54.8
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 2.8e-30 135.6 125 57.6
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 3.6e-30 135.2 127 56.7
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 6.2e-30 134.4 122 63.1
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 1.4e-29 133.3 68 89.7
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.4e-29 133.3 125 56.8
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 1.8e-29 132.9 127 55.9
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.4e-29 132.5 127 58.3
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 5.3e-29 131.3 127 58.3
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 5.3e-29 131.3 117 63.2
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 5.3e-29 131.3 125 56.0
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 2.0e-28 129.4 128 61.7
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 3.4e-28 128.6 127 55.9
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 5.8e-28 127.9 125 56.0
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.2e-26 122.1 124 51.6
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 3.2e-26 122.1 93 65.6
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 4.2e-26 121.7 137 52.6
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 7.1e-26 120.9 122 55.7
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 7.1e-26 120.9 124 50.8
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 7.1e-26 120.9 113 58.4
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 9.3e-26 120.6 124 50.8
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 1.6e-25 119.8 138 50.7
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.6e-25 119.8 125 55.2
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 2.3e-24 115.9 119 61.3
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 6.7e-24 114.4 103 59.2
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 6.7e-24 114.4 133 52.6
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 1.9e-23 112.8 126 50.8
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 1.9e-23 112.8 138 49.3
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 2.5e-23 112.5 119 56.3
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 2.1e-22 109.4 119 55.5
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.1e-21 107.1 125 46.4
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 4.0e-21 105.1 125 47.2
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 4.0e-21 105.1 125 45.6
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 5.3e-21 104.8 125 49.6
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 2.6e-20 102.4 126 54.0
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.6e-20 102.4 89 57.3
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 2.6e-20 102.4 125 47.2
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 4.5e-20 101.7 123 48.0
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 5.8e-20 101.3 125 47.2
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 7.6e-20 100.9 108 53.7
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 1.7e-19 99.8 125 47.2
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 2.2e-19 99.4 75 65.3
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 2.9e-19 99.0 112 50.9
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 4.9e-19 98.2 103 56.3
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.9e-19 98.2 89 55.1
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 1.9e-18 96.3 89 61.8
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 3.2e-18 95.5 89 53.9
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 4.2e-18 95.1 126 44.4
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 1.2e-17 93.6 126 45.2
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 1.2e-17 93.6 126 45.2
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 2.7e-17 92.4 126 45.2
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 7.9e-17 90.9 67 65.7
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 7.9e-17 90.9 123 45.5
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 1.3e-16 90.1 100 51.0
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 2.3e-16 89.4 126 44.4
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 4.3e-15 85.1 84 47.6
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 7.4e-15 84.3 125 41.6
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 1.3e-14 83.6 116 44.8
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 4.8e-14 81.6 106 43.4
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 4.8e-14 81.6 129 45.7
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 1.4e-13 80.1 123 45.5
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 1.8e-13 79.7 72 62.5
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 3.1e-13 79.0 133 40.6
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 5.3e-13 78.2 118 45.8
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-12 77.0 49 77.6
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 4.5e-12 75.1 132 37.1
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 1.7e-11 73.2 127 43.3
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 5.5e-10 68.2 68 52.9
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 2.1e-09 66.2 113 38.9
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 4.3e-07 58.5 122 38.5
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 5.7e-07 58.2 87 47.1
SEGI_33504 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 7.4e-07 57.8 96 36.5
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 9.7e-07 57.4 111 36.9
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 9.7e-07 57.4 111 36.9
Actinidia07459 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.3e-06 57.0 33 78.8
BcaNung00109 Brassica carinata HOM05D004683 ORTHO05D005388 1.6e-06 56.6 87 46.0
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 2.2e-06 56.2 110 41.8
MBI19_g45746_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 4.8e-06 55.1 73 46.6
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 6.3e-06 54.7 87 44.8
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 6.3e-06 54.7 87 44.8
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 6.3e-06 54.7 87 44.8
Zm00001eb365900 Zea mays HOM05D004683 ORTHO05D005388 6.3e-06 54.7 67 44.8


User provided reference genes

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