Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.3e-48 196.1 96 100.0
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.2e-33 146.4 87 80.5
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.2e-33 146.4 87 80.5
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 2.7e-30 135.2 88 77.3
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 2.7e-30 135.2 87 78.2
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 1.7e-29 132.5 88 75.0
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 3.0e-29 131.7 89 76.4
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 6.6e-29 130.6 88 73.9
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 8.6e-29 130.2 88 76.1
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 1.5e-28 129.4 88 76.1
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 3.3e-28 128.3 89 74.2
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 7.3e-28 127.1 88 75.0
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 2.8e-27 125.2 89 70.8
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 3.6e-27 124.8 88 70.5
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 4.7e-27 124.4 89 70.8
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.4e-26 122.9 87 72.4
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 1.4e-26 122.9 87 70.1
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 1.4e-26 122.9 88 67.0
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 1.8e-26 122.5 89 70.8
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 1.8e-26 122.5 90 74.4
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.8e-26 122.5 90 74.4
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.8e-26 122.5 90 73.3
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 1.8e-26 122.5 90 70.0
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 2.3e-26 122.1 88 71.6
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.3e-26 122.1 90 74.4
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 3.1e-26 121.7 89 71.9
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 4.0e-26 121.3 89 70.8
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 4.0e-26 121.3 87 66.7
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 4.0e-26 121.3 89 68.5
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 4.0e-26 121.3 93 67.7
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 5.2e-26 120.9 88 68.2
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 6.8e-26 120.6 89 70.8
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 6.8e-26 120.6 89 69.7
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 6.8e-26 120.6 90 73.3
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 6.8e-26 120.6 90 73.3
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.5e-25 119.4 89 71.9
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.5e-25 119.4 89 71.9
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 2.6e-25 118.6 92 68.5
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 2.6e-25 118.6 90 66.7
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 2.6e-25 118.6 89 69.7
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 3.4e-25 118.2 91 65.9
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 3.4e-25 118.2 88 70.5
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 4.4e-25 117.9 91 69.2
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 4.4e-25 117.9 87 67.8
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 4.4e-25 117.9 91 67.0
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 5.8e-25 117.5 88 70.5
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 5.8e-25 117.5 92 65.2
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 7.5e-25 117.1 89 68.5
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 7.5e-25 117.1 88 69.3
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 9.8e-25 116.7 89 68.5
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 9.8e-25 116.7 87 66.7
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.3e-24 116.3 88 64.8
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 1.3e-24 116.3 89 66.3
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 1.3e-24 116.3 92 67.4
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 1.7e-24 115.9 93 63.4
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.2e-24 115.5 89 68.5
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.9e-24 115.2 76 78.9
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 2.9e-24 115.2 89 65.2
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 2.9e-24 115.2 92 63.0
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 2.9e-24 115.2 90 65.6
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 2.9e-24 115.2 90 65.6
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 3.7e-24 114.8 89 66.3
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 3.7e-24 114.8 89 65.2
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 6.4e-24 114.0 87 67.8
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 6.4e-24 114.0 83 66.3
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 6.4e-24 114.0 88 65.9
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 8.3e-24 113.6 92 69.6
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 8.3e-24 113.6 90 68.9
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 1.1e-23 113.2 87 65.5
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 1.1e-23 113.2 93 62.4
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 1.1e-23 113.2 93 65.6
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 1.4e-23 112.8 86 64.0
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 1.4e-23 112.8 89 64.0
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.4e-23 112.8 90 65.6
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 2.4e-23 112.1 91 63.7
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.4e-23 112.1 89 62.9
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 5.4e-23 110.9 91 64.8
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 5.4e-23 110.9 89 64.0
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 7.1e-23 110.5 91 65.9
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 9.2e-23 110.2 89 62.9
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 2.1e-22 109.0 89 61.8
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.1e-22 109.0 88 62.5
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 2.1e-22 109.0 94 58.5
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 2.7e-22 108.6 88 61.4
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 3.5e-22 108.2 91 60.4
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 3.5e-22 108.2 90 61.1
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 4.6e-22 107.8 89 62.9
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 4.6e-22 107.8 85 61.2
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 4.6e-22 107.8 91 62.6
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 6.0e-22 107.5 91 62.6
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 6.0e-22 107.5 88 61.4
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 7.8e-22 107.1 86 65.1
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 1.0e-21 106.7 87 59.8
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 1.3e-21 106.3 89 64.0
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 1.3e-21 106.3 89 61.8
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 1.3e-21 106.3 91 61.5
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 1.3e-21 106.3 91 62.6
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 1.7e-21 105.9 94 58.5
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 2.3e-21 105.5 89 61.8
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 2.3e-21 105.5 88 60.2
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 2.3e-21 105.5 90 62.2
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.3e-21 105.5 88 59.1
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 2.3e-21 105.5 87 56.3
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 3.0e-21 105.1 91 61.5
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 3.9e-21 104.8 91 61.5
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 5.1e-21 104.4 89 57.3
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 5.1e-21 104.4 90 60.0
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 6.6e-21 104.0 89 59.6
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 8.6e-21 103.6 94 56.4
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 8.6e-21 103.6 87 58.6
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 8.6e-21 103.6 88 60.2
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 1.5e-20 102.8 88 60.2
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 1.5e-20 102.8 88 60.2
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 1.5e-20 102.8 91 59.3
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 1.9e-20 102.4 89 58.4
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.5e-20 102.1 63 74.6
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 2.5e-20 102.1 89 60.7
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 5.6e-20 100.9 88 60.2
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 9.5e-20 100.1 89 57.3
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 9.5e-20 100.1 89 57.3
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 2.8e-19 98.6 94 54.3
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 6.2e-19 97.4 88 58.0
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 1.4e-18 96.3 89 59.6
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 1.8e-18 95.9 117 50.4
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.8e-18 95.9 94 52.1
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 2.3e-18 95.5 62 67.7
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 4.0e-18 94.7 88 51.1
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 1.5e-17 92.8 88 50.0
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.5e-17 92.8 56 73.2
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 2.6e-17 92.0 72 70.8
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 5.4e-15 84.3 72 61.1
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 7.8e-14 80.5 73 57.5
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 3.0e-13 78.6 79 57.0
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 2.5e-12 75.5 72 56.9
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 2.1e-11 72.4 81 46.9
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 2.8e-11 72.0 72 55.6
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 3.6e-11 71.6 78 50.0
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 5.2e-10 67.8 78 50.0
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 5.2e-10 67.8 96 44.8
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 8.9e-10 67.0 97 43.3
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.6e-09 65.5 78 48.7
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 5.8e-09 64.3 69 49.3
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 8.4e-08 60.5 92 42.4
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 2.4e-07 58.9 60 58.3
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 2.4e-07 58.9 60 58.3
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 2.4e-07 58.9 34 73.5
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 1.6e-06 56.2 94 41.5
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 7.8e-06 53.9 88 37.5


User provided reference genes

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