Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 3968.3 1998 100.0
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2743.0 2023 71.3
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 2741.5 2035 71.1
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2727.6 2010 71.0
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 2590.5 2056 67.7
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2393.2 2038 62.7
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2307.7 2034 60.3
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 2301.2 2020 61.0
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 2245.3 2061 59.0
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 2199.5 2029 59.3
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 2157.1 2024 57.2
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 2155.6 2036 58.1
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 2139.8 2026 58.0
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 2137.5 2021 58.2
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 2127.1 2021 57.7
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2122.4 2032 57.4
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2117.8 2027 57.2
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 2110.5 2049 57.5
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2105.1 2023 57.8
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2098.6 2006 58.3
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 2097.4 2030 56.4
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 2087.0 2030 55.6
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2072.7 2028 54.7
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2070.4 2026 55.8
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2064.7 2029 55.1
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2063.5 2049 56.6
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2060.4 2056 56.3
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 2058.1 2016 55.9
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 2053.5 2040 54.7
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 2048.5 1986 58.1
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2041.2 2022 55.9
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 2038.8 2002 56.2
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 2015.7 2027 55.2
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 2013.4 2054 54.7
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 2011.9 2049 54.1
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 2011.1 2028 55.0
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 2007.6 2019 55.0
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 2005.7 2026 54.3
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1989.9 2048 55.4
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1968.4 2026 54.7
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1952.9 1934 56.0
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1946.8 2039 53.5
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1936.0 2039 53.4
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1923.3 2031 52.8
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1921.7 2048 53.8
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1885.9 2033 52.4
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1870.9 2039 51.5
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1867.0 2034 51.1
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1865.1 2032 51.9
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1862.4 2030 51.7
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1860.5 1941 54.0
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1847.0 2071 51.0
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1845.5 2018 51.2
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1836.6 2032 51.6
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1836.2 2039 51.1
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1825.4 2052 51.5
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1823.1 2018 51.3
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1820.1 2047 50.9
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1810.4 2036 50.7
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1808.9 2050 50.8
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1788.5 2033 50.5
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1756.9 2045 49.7
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1748.8 1977 51.1
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1736.5 2030 49.6
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1728.4 1936 49.7
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1724.9 2035 49.8
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1722.6 1949 50.5
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1719.1 2015 50.0
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1717.6 2054 48.4
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1709.9 2030 48.2
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1681.4 2034 48.8
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1657.9 2160 46.0
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1645.6 2036 47.2
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1645.2 1751 53.7
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1630.5 2031 48.3
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1629.0 2034 47.2
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1628.2 1753 53.5
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1624.8 2033 47.4
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1607.4 2027 46.8
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1606.3 2028 47.1
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1602.8 2033 47.3
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1593.9 2027 47.6
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1592.4 2032 46.9
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1567.0 2033 46.8
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1567.0 2033 46.8
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1564.7 2035 46.4
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1564.3 2035 46.4
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1558.1 2033 46.4
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1467.2 1816 47.0
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1444.1 1481 54.3
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1430.6 1481 53.8
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1361.7 2115 41.5
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1355.9 2021 42.0
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1335.5 1753 45.6
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 0.0e+00 1331.2 1734 46.4
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 0.0e+00 1184.1 1222 53.5
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 0.0e+00 1138.6 2051 37.0
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 1.3e-307 1060.8 2142 35.2
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 3.6e-278 963.0 1699 37.5
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 1.4e-261 907.9 1540 36.9
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 1.1e-245 855.1 2178 31.6
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 2.0e-236 824.3 2008 33.1
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 3.8e-203 713.8 677 58.6
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 5.5e-202 709.9 2119 29.5
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 2.0e-191 674.9 1146 40.7
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 2.6e-188 664.5 644 58.7
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 6.1e-169 600.1 442 71.5
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 6.1e-169 600.1 1721 29.5
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 1.0e-155 556.2 1233 32.8
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 5.4e-149 533.9 1912 26.7
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 6.4e-142 510.4 394 65.7
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 1.2e-135 489.6 344 73.3
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 4.9e-134 484.2 361 72.6
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 4.7e-121 441.0 274 81.0
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 2.0e-119 435.6 386 57.3
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 8.7e-107 393.7 273 71.8
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 1.9e-82 312.8 516 39.9
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 2.2e-78 299.3 198 71.2
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 1.0e-75 290.4 372 46.0
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 1.8e-75 289.7 261 63.2
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 1.4e-56 226.9 220 57.3
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 1.3e-54 220.3 171 64.3
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 3.0e-51 209.1 180 60.6
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 8.0e-44 184.5 368 34.0
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 6.8e-43 181.4 412 35.0
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 6.8e-35 154.8 178 53.9
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 1.5e-34 153.7 83 85.5
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 4.0e-27 129.0 265 34.7
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 1.7e-25 123.6 320 27.5
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-25 122.9 591 22.0
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 4.9e-25 122.1 217 36.4
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 8.3e-25 121.3 67 88.1
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 2.4e-24 119.8 67 86.6
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 6.0e-23 115.2 64 89.1
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 5.0e-22 112.1 112 57.1
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 1.6e-20 107.1 68 77.9
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-20 106.7 100 51.0
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 2.3e-19 103.2 68 72.1
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 8.9e-19 101.3 62 75.8
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 3.9e-14 85.9 55 74.5
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 5.6e-13 82.0 56 75.0
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 2.1e-12 80.1 125 40.0
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 2.1e-12 80.1 65 70.8
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 3.2e-08 66.2 46 65.2


User provided reference genes

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