Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011317 Camellia sinensis var. sinensis HOM05D006359 ORTHO05D007871 4.5e-91 337.8 158 100.0
Atru.chr12.1978 Acer truncatum HOM05D006359 ORTHO05D007871 7.9e-80 300.4 155 86.5
Actinidia18703 Actinidia chinensis HOM05D006359 ORTHO05D007871 7.9e-80 300.4 154 88.3
Phvul.002G039500 Phaseolus vulgaris HOM05D006359 ORTHO05D007871 2.3e-79 298.9 157 86.6
Cc02_g00330 Coffea canephora HOM05D006359 ORTHO05D007871 3.9e-79 298.1 156 84.0
Eucgr.K00090 Eucalyptus grandis HOM05D006359 ORTHO05D007871 6.7e-79 297.4 156 84.0
PGSC0003DMG402000567 Solanum tuberosum HOM05D006359 ORTHO05D007871 8.7e-79 297.0 156 82.7
Lsat_1_v5_gn_3_105561 Lactuca sativa HOM05D006359 ORTHO05D007871 1.1e-78 296.6 156 84.6
TAR375G0743 Trochodendron aralioides HOM05D006359 ORTHO05D007871 1.1e-78 296.6 156 84.6
Sopen03g027690 Solanum pennellii HOM05D006359 ORTHO05D007871 1.9e-78 295.8 156 82.1
CAN.G303.77 Capsicum annuum HOM05D006359 ORTHO05D007871 4.3e-78 294.7 156 82.1
Glyma.01G228400 Glycine max HOM05D006359 ORTHO05D007871 9.7e-78 293.5 153 85.0
Glyma.11G011200 Glycine max HOM05D006359 ORTHO05D007871 1.6e-77 292.7 157 83.4
Aa31LG5G13580 Aethionema arabicum HOM05D006359 ORTHO05D007871 3.7e-77 291.6 154 83.8
Cpa.g.sc39.69 Carica papaya HOM05D006359 ORTHO05D007871 3.7e-77 291.6 155 82.6
SalBow4G0660 Salvia bowleyana HOM05D006359 ORTHO05D007871 3.7e-77 291.6 158 81.0
SalBow4G2166 Salvia bowleyana HOM05D006359 ORTHO05D007871 3.7e-77 291.6 158 81.0
COL.COLO4_25307 Corchorus olitorius HOM05D006359 ORTHO05D007871 6.3e-77 290.8 156 82.7
Migut.F00100 Erythranthe guttata HOM05D006359 ORTHO05D007871 6.3e-77 290.8 156 82.1
THA.LOC104820881 Tarenaya hassleriana HOM05D006359 ORTHO05D007871 8.2e-77 290.4 155 83.2
Carub.0003s0225 Capsella rubella HOM05D006359 ORTHO05D007871 1.1e-76 290.0 154 83.8
AT3G03100 Arabidopsis thaliana HOM05D006359 ORTHO05D007871 1.8e-76 289.3 154 82.5
GSVIVG01024414001 Vitis vinifera HOM05D006359 ORTHO05D007871 1.8e-76 289.3 155 85.2
ATR0829G118 Amborella trichopoda HOM05D006359 ORTHO05D007871 2.4e-76 288.9 156 82.1
Thhalv10021682m.g Eutrema salsugineum HOM05D006359 ORTHO05D007871 3.1e-76 288.5 154 83.1
CANSAT56G0993 Cannabis sativa HOM05D006359 ORTHO05D007871 4.1e-76 288.1 156 83.3
HanXRQChr12g0381881 Helianthus annuus HOM05D006359 ORTHO05D007871 4.1e-76 288.1 156 82.1
SGA_v2.0_scaffold18G08507 Striga asiatica HOM05D006359 ORTHO05D007871 4.1e-76 288.1 156 81.4
AL3G12700 Arabidopsis lyrata HOM05D006359 ORTHO05D007871 5.3e-76 287.7 154 82.5
BolC1t05848H Brassica oleracea HOM05D006359 ORTHO05D007871 6.9e-76 287.3 154 82.5
BraA01t04593Z Brassica rapa HOM05D006359 ORTHO05D007871 6.9e-76 287.3 154 82.5
CARHR077120 Cardamine hirsuta HOM05D006359 ORTHO05D007871 6.9e-76 287.3 154 81.8
Manes.08G162700 Manihot esculenta HOM05D006359 ORTHO05D007871 6.9e-76 287.3 155 81.9
SGA_v2.0_scaffold44G16885 Striga asiatica HOM05D006359 ORTHO05D007871 6.9e-76 287.3 156 82.1
Cfa015873 Carpinus fangiana HOM05D006359 ORTHO05D007871 9.0e-76 287.0 155 83.2
Duzib168G1989 Durio zibethinus HOM05D006359 ORTHO05D007871 9.0e-76 287.0 154 83.1
Gohir.D09G101400 Gossypium hirsutum HOM05D006359 ORTHO05D007871 1.5e-75 286.2 154 81.8
Gorai.006G118800 Gossypium raimondii HOM05D006359 ORTHO05D007871 1.5e-75 286.2 154 81.8
Gohir.A09G104700 Gossypium hirsutum HOM05D006359 ORTHO05D007871 2.0e-75 285.8 154 81.8
Thecc.09G264700 Theobroma cacao HOM05D006359 ORTHO05D007871 2.0e-75 285.8 155 81.9
ECA246G3947 Erigeron canadensis HOM05D006359 ORTHO05D007871 2.6e-75 285.4 155 80.6
CiPaw.06G019000 Carya illinoinensis HOM05D006359 ORTHO05D007871 3.4e-75 285.0 154 82.5
arahy.Tifrunner.gnm1.ann1.K5IGPH Arachis hypogaea HOM05D006359 ORTHO05D007871 7.7e-75 283.9 156 81.4
MELO3C005389.2 Cucumis melo HOM05D006359 ORTHO05D007871 7.7e-75 283.9 157 80.3
Sp3g02140 Schrenkiella parvula HOM05D006359 ORTHO05D007871 7.7e-75 283.9 154 81.2
unitig_0.g2431 Utricularia gibba HOM05D001194 ORTHO05D007871 1.3e-74 283.1 156 79.5
A05p44080 Brassica napus HOM05D006359 ORTHO05D007871 1.7e-74 282.7 154 81.2
THA.LOC104827217 Tarenaya hassleriana HOM05D006359 ORTHO05D007871 2.2e-74 282.3 155 80.0
arahy.Tifrunner.gnm1.ann1.N39QDT Arachis hypogaea HOM05D006359 ORTHO05D007871 2.9e-74 282.0 152 82.2
Dinv29162 Davidia involucrata HOM05D006359 ORTHO05D007871 2.9e-74 282.0 148 85.1
C05p63700 Brassica napus HOM05D006359 ORTHO05D007871 3.8e-74 281.6 154 80.5
BolC5t35039H Brassica oleracea HOM05D006359 ORTHO05D007871 3.8e-74 281.6 154 80.5
BraSC90t46703Z Brassica rapa HOM05D006359 ORTHO05D007871 3.8e-74 281.6 154 80.5
CsaV3_5G005640 Cucumis sativus L. HOM05D006359 ORTHO05D007871 3.8e-74 281.6 157 80.3
Prupe.2G325400 Prunus persica HOM05D006359 ORTHO05D007871 5.0e-74 281.2 158 79.7
Rhsim09G0212500 Rhododendron simsii HOM05D006359 ORTHO05D007871 5.0e-74 281.2 154 83.8
Potri.019G051400 Populus trichocarpa HOM05D006359 ORTHO05D007871 8.5e-74 280.4 154 82.5
Sabra19G0057200 Salix brachista HOM05D006359 ORTHO05D007871 1.1e-73 280.0 155 80.6
Sed0025211 Sechium edule HOM05D006359 ORTHO05D007871 1.1e-73 280.0 157 79.6
TPR.G17376 Trifolium pratense HOM05D006359 ORTHO05D007871 1.4e-73 279.6 155 80.0
TPR.G779 Trifolium pratense HOM05D006359 ORTHO05D007871 1.4e-73 279.6 155 80.0
Ca_23151_v3 Cicer arietinum L. HOM05D006359 ORTHO05D007871 2.5e-73 278.9 159 80.5
RcHm_v2.0_Chr1g0384091 Rosa chinensis HOM05D006359 ORTHO05D007871 3.2e-73 278.5 158 80.4
Aqoxy3G02089 Aquilegia oxysepala HOM05D006359 ORTHO05D007871 5.5e-73 277.7 153 78.4
Sed0002409 Sechium edule HOM05D006359 ORTHO05D007871 9.4e-73 276.9 157 77.7
FvH4_7g33890 Fragaria vesca HOM05D006359 ORTHO05D007871 1.2e-72 276.6 158 79.1
TWI74G0194 Tripterygium wilfordii HOM05D006359 ORTHO05D007871 1.2e-72 276.6 153 79.7
MD01G1235400 Malus domestica HOM05D006359 ORTHO05D007871 1.6e-72 276.2 156 78.8
PGR042G0220 Punica granatum HOM05D006359 ORTHO05D007871 1.6e-72 276.2 156 78.8
MD07G1308200 Malus domestica HOM05D006359 ORTHO05D007871 2.1e-72 275.8 156 78.2
Peaxi162Scf00745g00854 Petunia axillaris HOM05D006359 ORTHO05D007871 2.7e-72 275.4 158 79.1
AUR62028171 Chenopodium quinoa HOM05D006359 ORTHO05D007871 6.1e-72 274.2 156 76.9
EL10Ac3g05084 Beta vulgaris HOM05D006359 ORTHO05D007871 7.9e-72 273.9 156 78.2
Duzib150G0394 Durio zibethinus HOM05D006359 ORTHO05D007871 7.9e-72 273.9 154 78.6
Nitab4.5_0011930g0020 Nicotiana tabacum HOM05D006359 ORTHO05D007871 1.0e-71 273.5 156 78.8
Medtr8g009960 Medicago truncatula HOM05D006359 ORTHO05D007871 1.4e-71 273.1 154 77.3
Lalb_Chr05g0211271 Lupinus albus HOM05D006359 ORTHO05D007871 1.8e-71 272.7 153 79.7
Lj3g0004693 Lotus japonicus HOM05D006359 ORTHO05D007871 3.0e-71 271.9 157 77.1
PSO063G2711 Papaver somniferum HOM05D006359 ORTHO05D007871 3.0e-71 271.9 156 77.6
Ciclev10022653m.g Citrus clementina HOM05D006359 ORTHO05D007871 5.1e-71 271.2 152 80.9
FAN03G1870 Fragaria x ananassa HOM05D006359 ORTHO05D007871 6.7e-71 270.8 158 77.2
PSO782G4768 Papaver somniferum HOM05D006359 ORTHO05D007871 6.7e-71 270.8 156 78.2
arahy.Tifrunner.gnm1.ann1.0WZ6H1 Arachis hypogaea HOM05D006359 ORTHO05D007871 1.3e-69 266.5 164 74.4
Zm00001eb025210 Zea mays HOM05D006359 ORTHO05D007871 8.2e-69 263.8 156 75.6
Os10g0579300 Oryza sativa ssp. japonica HOM05D006359 ORTHO05D007871 2.4e-68 262.3 156 76.3
vmacro10188 Vaccinium macrocarpon HOM05D006359 ORTHO05D007871 3.1e-68 261.9 126 92.1
QL09p024508 Quercus lobata HOM05D006359 ORTHO05D007871 1.0e-66 256.9 156 74.4
VMungo1215G3178 Vigna mungo HOM05D006359 ORTHO05D007871 1.0e-66 256.9 129 86.8
Sc13g0010840 Simmondsia chinensis HOM05D006359 ORTHO05D007871 1.3e-66 256.5 128 86.7
Nitab4.5_0000021g0410 Nicotiana tabacum HOM05D006359 ORTHO05D007871 5.0e-66 254.6 248 52.0
FAN03G2552 Fragaria x ananassa HOM05D006359 ORTHO05D007871 8.5e-66 253.8 165 73.3
Zm00001eb224990 Zea mays HOM05D006359 ORTHO05D007871 1.4e-65 253.1 155 74.8
Hund09785 Selenicereus undatus HOM05D006359 ORTHO05D007871 2.5e-65 252.3 154 75.3
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 9.4e-65 250.4 149 75.8
AUR62002057 Chenopodium quinoa HOM05D006359 ORTHO05D007871 3.6e-64 248.4 156 70.5
TPR.G4015 Trifolium pratense HOM05D006359 ORTHO05D007871 7.9e-64 247.3 155 72.3
FAN01G1102 Fragaria x ananassa HOM05D006359 ORTHO05D007871 1.0e-63 246.9 165 71.5
Lj3A888T26 Lonicera japonica HOM05D006359 ORTHO05D007871 4.4e-62 241.5 119 88.2
Haze_00616 Corylus avellana HOM05D006359 ORTHO05D007871 5.0e-58 228.0 155 71.0
arahy.Tifrunner.gnm1.ann1.PN0BWC Arachis hypogaea HOM05D006359 ORTHO05D007871 5.5e-57 224.6 121 83.5
BNapus_Darmor_BZH_scaffold_129p00020 Brassica napus HOM05D006359 ORTHO05D007871 1.2e-56 223.4 119 84.0
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 6.7e-55 217.6 121 78.5
Gorai.009G080000 Gossypium raimondii HOM05D006359 ORTHO05D007871 2.6e-54 215.7 155 65.2
CDE11G0363 Ceratophyllum demersum HOM05D006359 ORTHO05D007871 3.3e-54 215.3 119 80.7
BcaB04g21383 Brassica carinata HOM05D006359 ORTHO05D007871 3.1e-52 208.8 114 83.3
FAN02G0767 Fragaria x ananassa HOM05D006359 ORTHO05D007871 1.3e-50 203.4 124 75.0
ClCG01G005390 Citrullus lanatus HOM05D006359 ORTHO05D007871 6.5e-50 201.1 118 77.1
Mapoly0001s0046 Marchantia polymorpha HOM05D006359 ORTHO05D007871 1.5e-49 199.9 154 57.8
AagrBONN_evm.TU.Sc2ySwM_344.5152 Anthoceros agrestis HOM05D006359 ORTHO05D007871 1.4e-47 193.4 148 57.4
FAN05G5659 Fragaria x ananassa HOM05D006359 ORTHO05D007871 5.2e-47 191.4 112 79.5
Pp3c16_5910 Physcomitrium patens HOM05D006359 ORTHO05D007871 2.0e-46 189.5 157 56.1
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 3.4e-46 188.7 96 85.4
Psat4g215600 Pisum sativum HOM05D006359 ORTHO05D007871 2.2e-45 186.0 106 78.3
Gohir.A05G075800 Gossypium hirsutum HOM05D006359 ORTHO05D007871 7.0e-44 181.0 155 56.8
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 5.0e-42 174.9 87 87.4
Nn1g01943 Nelumbo nucifera HOM05D006359 ORTHO05D007871 1.5e-41 173.3 104 76.0
CBR_g23185 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-40 169.1 146 51.4
Hma1.2p1_0758F.1_g213680 Hydrangea macrophylla HOM05D006359 ORTHO05D007871 6.1e-40 167.9 93 82.8
SMO331G0004 Selaginella moellendorffii HOM05D006359 ORTHO05D007871 2.2e-37 159.5 104 65.4
Hma1.2p1_0758F.1_g213690 Hydrangea macrophylla HOM05D006359 ORTHO05D007871 7.7e-35 151.0 82 84.1
FAN10G1928 Fragaria x ananassa HOM05D006359 ORTHO05D007871 1.1e-33 147.1 94 76.6
Actinidia33791 Actinidia chinensis HOM05D006359 ORTHO05D007871 3.2e-28 129.0 71 84.5
vmacro23522 Vaccinium macrocarpon HOM05D006359 ORTHO05D007871 1.9e-20 103.2 46 95.7
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 2.4e-20 102.8 58 75.9
MCO08G302 Micromonas commoda HOM05D006359 ORTHO05D007871 2.8e-16 89.4 106 46.2
Cre11.g467767 Chlamydomonas reinhardtii HOM05D006359 ORTHO05D007871 1.1e-15 87.4 128 36.7
Haze_26508 Corylus avellana HOM05D006359 ORTHO05D007871 4.3e-09 65.5 110 38.2
PRCOL_00004481 Prasinoderma coloniale HOM05D006359 ORTHO05D007871 1.8e-07 60.1 125 34.4
VMungo1383G0392 Vigna mungo HOM05D006359 ORTHO05D007871 2.0e-06 56.6 28 89.3


User provided reference genes

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