Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 6.4e-103 377.5 198 100.0
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 9.2e-102 373.6 198 99.0
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 3.8e-79 298.5 198 77.3
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 6.4e-79 297.7 200 79.5
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 2.3e-76 289.3 194 74.7
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.5e-75 285.8 207 75.4
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 3.3e-75 285.4 194 73.2
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.3e-74 283.5 211 73.5
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 1.1e-73 280.4 203 75.9
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 2.6e-72 275.8 198 73.2
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 5.8e-72 274.6 188 72.9
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.9e-71 272.3 165 85.5
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 6.4e-71 271.2 201 71.1
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 6.4e-71 271.2 199 73.4
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 6.4e-71 271.2 221 68.8
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 6.4e-71 271.2 201 68.2
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.4e-70 270.0 198 69.2
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 3.2e-70 268.9 197 68.0
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 9.3e-70 267.3 194 71.6
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.2e-69 266.9 198 73.2
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.6e-69 266.5 203 70.4
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 1.6e-69 266.5 195 69.7
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 2.7e-69 265.8 203 70.4
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.3e-68 263.5 206 67.0
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 2.3e-68 262.7 197 73.1
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 3.0e-68 262.3 172 76.7
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 3.0e-68 262.3 192 66.7
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 5.1e-68 261.5 192 67.7
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 6.7e-68 261.2 206 66.5
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 8.7e-68 260.8 181 72.4
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 8.7e-68 260.8 198 70.7
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.1e-67 260.4 194 68.6
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 1.1e-67 260.4 198 71.2
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 1.9e-67 259.6 186 73.1
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 7.4e-67 257.7 184 72.3
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 7.4e-67 257.7 180 68.3
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 7.4e-67 257.7 201 69.2
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 9.6e-67 257.3 172 74.4
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 9.6e-67 257.3 181 70.2
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 1.3e-66 256.9 201 70.1
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.3e-66 256.9 170 75.3
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 2.1e-66 256.1 196 67.9
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 2.1e-66 256.1 197 66.0
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 2.1e-66 256.1 201 68.7
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 3.7e-66 255.4 207 66.2
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 4.8e-66 255.0 197 67.5
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 4.8e-66 255.0 220 63.6
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 6.2e-66 254.6 186 68.8
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 1.1e-65 253.8 175 74.9
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 1.1e-65 253.8 198 68.2
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 1.4e-65 253.4 187 70.1
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 1.4e-65 253.4 185 71.4
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.8e-65 253.1 200 68.5
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 2.4e-65 252.7 172 72.7
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 3.1e-65 252.3 181 66.3
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 3.1e-65 252.3 201 68.2
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.0e-65 251.9 194 66.0
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 5.3e-65 251.5 171 70.2
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 5.3e-65 251.5 189 67.2
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 6.9e-65 251.1 186 67.2
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 6.9e-65 251.1 173 75.1
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 2.6e-64 249.2 180 69.4
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 2.6e-64 249.2 192 65.1
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 3.4e-64 248.8 196 65.3
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 5.8e-64 248.1 192 65.6
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 1.0e-63 247.3 201 62.2
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 1.0e-63 247.3 173 70.5
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.3e-63 246.9 198 64.1
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 1.7e-63 246.5 194 65.5
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 1.7e-63 246.5 186 67.2
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 3.8e-63 245.4 183 68.9
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 4.9e-63 245.0 175 72.6
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 4.9e-63 245.0 199 67.8
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 6.5e-63 244.6 186 66.7
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 8.4e-63 244.2 189 66.1
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 1.4e-62 243.4 195 64.1
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 1.4e-62 243.4 195 64.1
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 1.9e-62 243.0 202 64.4
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.9e-62 243.0 199 62.3
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.5e-62 242.7 168 72.6
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 3.2e-62 242.3 170 74.7
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 3.2e-62 242.3 181 70.7
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 3.2e-62 242.3 197 64.5
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 4.2e-62 241.9 192 64.6
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 4.2e-62 241.9 194 62.9
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 5.5e-62 241.5 181 67.4
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 5.5e-62 241.5 181 67.4
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 5.5e-62 241.5 168 69.0
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 7.1e-62 241.1 181 67.4
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 7.1e-62 241.1 181 67.4
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 2.7e-61 239.2 201 60.2
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.7e-61 239.2 194 63.9
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 2.7e-61 239.2 192 63.5
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 2.7e-61 239.2 150 74.7
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 3.5e-61 238.8 210 62.9
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 4.6e-61 238.4 191 66.0
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 6.0e-61 238.0 198 64.1
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 6.0e-61 238.0 191 65.4
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.8e-60 236.5 192 66.1
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 3.0e-60 235.7 192 63.0
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 8.7e-60 234.2 194 67.5
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 1.9e-59 233.0 164 68.3
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 2.5e-59 232.6 158 75.9
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 2.5e-59 232.6 158 75.9
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 2.5e-59 232.6 188 61.7
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 3.3e-59 232.3 172 65.7
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 5.7e-59 231.5 189 65.1
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 7.4e-59 231.1 170 69.4
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 1.3e-58 230.3 168 69.6
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.6e-58 229.9 210 57.1
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 3.7e-58 228.8 170 67.6
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 4.8e-58 228.4 166 70.5
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.4e-57 226.9 194 60.3
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 2.4e-57 226.1 178 63.5
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 5.3e-57 224.9 178 62.9
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 2.0e-56 223.0 199 61.8
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 7.6e-56 221.1 217 58.1
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 5.5e-54 214.9 221 54.8
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 5.5e-54 214.9 167 62.9
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 1.6e-53 213.4 223 51.6
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 5.1e-52 208.4 142 70.4
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 5.7e-51 204.9 181 61.3
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 6.3e-50 201.4 196 58.2
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 9.0e-49 197.6 166 63.9
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 8.5e-47 191.0 168 57.7
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.6e-45 186.8 163 55.8
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 6.1e-45 184.9 164 54.9
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 5.1e-44 181.8 189 53.4
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 9.7e-43 177.6 142 64.1
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 5.1e-36 155.2 100 81.0
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 1.1e-35 154.1 101 73.3
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 2.6e-35 152.9 111 70.3
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.6e-35 152.9 165 51.5
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.2e-34 149.8 168 47.6
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 6.3e-34 148.3 168 47.0
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.8e-33 146.7 196 48.0
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.4e-33 146.4 111 67.6
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 3.1e-33 146.0 125 57.6
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 4.1e-33 145.6 119 64.7
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 2.0e-32 143.3 111 67.6
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 1.7e-31 140.2 99 70.7
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 2.2e-31 139.8 97 70.1
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 1.1e-30 137.5 99 68.7
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 3.6e-29 132.5 139 51.8
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 4.1e-25 119.0 82 70.7
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.1e-22 110.9 167 46.7
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 1.5e-19 100.5 68 69.1
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.1e-17 92.4 79 54.4
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 2.5e-14 83.2 135 35.6
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 3.2e-14 82.8 76 60.5
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 4.0e-12 75.9 64 62.5
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 9.8e-11 71.2 80 55.0
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 3.7e-10 69.3 61 50.8
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.4e-09 67.4 96 38.5
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 5.9e-08 62.0 73 53.4
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 7.7e-08 61.6 41 70.7
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 5.0e-07 58.9 59 55.9
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 3.3e-06 56.2 59 54.2


User provided reference genes

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