Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 0.0e+00 1177.9 590 100.0
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.9e-182 643.3 695 54.2
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.2e-181 640.6 684 55.0
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 3.8e-167 592.4 631 57.7
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 7.8e-165 584.7 643 54.9
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 1.3e-164 583.9 603 55.6
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.7e-164 583.6 606 54.6
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 7.9e-157 558.1 596 51.0
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.8e-148 530.4 548 57.8
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 5.1e-148 528.9 602 51.2
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 6.7e-148 528.5 679 47.7
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 8.2e-138 495.0 626 50.3
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 7.6e-136 488.4 675 45.6
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 1.9e-134 483.8 534 51.9
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.3e-132 477.6 593 47.2
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 1.6e-130 470.7 620 45.0
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 1.8e-129 467.2 648 44.3
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.7e-127 460.7 624 45.7
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 2.9e-127 459.9 644 44.7
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 3.0e-124 449.9 613 44.0
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 5.7e-123 445.7 624 45.4
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 1.3e-122 444.5 619 43.9
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.2e-122 443.7 559 47.8
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 3.1e-121 439.9 609 45.8
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 6.9e-121 438.7 573 45.9
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.6e-120 436.8 565 47.3
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 4.5e-120 436.0 631 44.8
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 1.3e-119 434.5 652 42.9
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 8.5e-119 431.8 627 45.1
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 5.5e-118 429.1 550 48.0
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 7.2e-118 428.7 599 46.1
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 7.2e-118 428.7 663 42.7
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 3.0e-116 423.3 604 43.7
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.3e-114 417.9 644 45.8
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 6.3e-114 415.6 560 45.2
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 1.1e-113 414.8 562 45.6
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 5.0e-111 406.0 655 39.8
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 8.5e-111 405.2 662 40.5
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 1.9e-110 404.1 651 41.2
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 1.6e-109 401.0 614 42.8
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 4.7e-109 399.4 563 44.8
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 2.3e-108 397.1 551 43.7
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 1.5e-107 394.4 677 40.8
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 5.7e-107 392.5 640 41.2
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 4.5e-104 382.9 627 40.2
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 2.5e-102 377.1 571 42.6
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.4e-100 371.3 621 41.1
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 3.0e-100 370.2 648 39.4
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 4.8e-98 362.8 620 40.3
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 7.0e-97 359.0 646 38.2
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 9.1e-97 358.6 704 36.8
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 3.5e-96 356.7 637 41.0
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 7.7e-96 355.5 642 39.9
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 1.7e-95 354.4 663 37.7
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 6.5e-95 352.4 623 40.3
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 8.0e-93 345.5 597 38.5
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 8.0e-93 345.5 537 41.7
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 1.0e-92 345.1 673 37.9
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.0e-92 343.6 606 40.4
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 6.8e-92 342.4 605 39.0
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 1.2e-91 341.7 647 38.3
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 1.5e-91 341.3 676 35.8
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 1.8e-89 334.3 703 36.0
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 5.4e-89 332.8 620 38.2
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 1.2e-88 331.6 558 39.4
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 4.5e-88 329.7 649 36.8
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 3.3e-86 323.6 691 36.3
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 4.7e-85 319.7 694 36.7
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.0e-84 318.5 634 37.5
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 1.8e-84 317.8 527 41.9
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 3.4e-83 313.5 698 35.1
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 1.3e-82 311.6 641 34.8
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 2.2e-82 310.8 570 39.6
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 1.2e-80 305.1 656 35.8
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 4.6e-80 303.1 613 35.7
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 1.0e-79 302.0 586 38.4
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 2.3e-79 300.8 606 35.5
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 3.9e-79 300.1 614 37.0
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 5.0e-79 299.7 606 34.7
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 5.0e-79 299.7 606 34.7
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 5.0e-79 299.7 603 35.3
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 4.3e-78 296.6 621 35.7
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 1.2e-77 295.0 604 35.1
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 3.6e-77 293.5 589 38.2
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 6.2e-77 292.7 794 31.6
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 1.4e-76 291.6 551 37.6
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 1.8e-76 291.2 595 37.1
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 2.3e-76 290.8 601 35.6
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 2.3e-76 290.8 602 36.0
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 3.1e-76 290.4 759 31.1
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 3.4e-75 287.0 799 30.8
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 6.4e-74 282.7 601 35.3
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 6.4e-74 282.7 609 34.5
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 6.4e-74 282.7 609 34.5
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 3.2e-73 280.4 553 38.5
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 7.0e-73 279.3 601 34.4
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.2e-72 278.5 548 36.7
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 2.0e-72 277.7 606 33.8
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 1.0e-71 275.4 602 35.7
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 3.9e-71 273.5 727 30.9
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 6.6e-71 272.7 625 34.2
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.1e-70 271.9 673 32.5
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 2.1e-69 267.7 603 34.2
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 3.6e-69 266.9 837 29.5
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 2.3e-68 264.2 614 33.6
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 4.0e-68 263.5 792 30.6
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 1.2e-67 261.9 681 32.3
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 1.7e-66 258.1 640 33.0
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 1.7e-66 258.1 521 36.5
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.4e-65 255.0 525 35.6
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 5.4e-65 253.1 427 40.3
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.6e-64 251.5 532 35.7
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 1.5e-62 245.0 694 31.0
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 8.1e-61 239.2 574 31.9
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 2.0e-59 234.6 664 30.9
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 6.4e-58 229.6 653 30.3
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 1.2e-56 225.3 577 30.5
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 1.2e-56 225.3 521 33.6
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 4.6e-56 223.4 312 44.9
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 5.1e-55 219.9 567 33.9
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 5.1e-55 219.9 456 36.4
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 4.0e-52 210.3 297 42.8
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 9.9e-51 205.7 408 36.5
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.8e-50 203.8 172 62.2
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 1.4e-49 201.8 397 35.8
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 2.4e-49 201.1 649 29.3
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.7e-48 197.6 709 28.9
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 1.0e-47 195.7 302 41.1
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.0e-47 195.7 350 38.9
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 3.9e-47 193.7 434 34.1
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.0e-43 181.4 156 59.0
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 2.4e-41 174.5 542 30.4
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 4.6e-40 170.2 406 34.2
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 1.3e-39 168.7 319 37.3
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 5.6e-38 163.3 177 50.3
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 1.2e-35 155.6 753 27.0
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 4.2e-33 147.1 320 33.8
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 6.0e-32 143.3 198 43.4
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 6.2e-29 133.3 332 33.7
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 1.1e-28 132.5 332 33.7
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 5.8e-27 126.7 333 33.6
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.7e-26 125.2 113 61.1
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 2.2e-26 124.8 137 49.6
Actinidia26737 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.1e-25 122.5 165 52.7
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 4.2e-25 120.6 345 31.6
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 6.0e-24 116.7 646 26.0
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.1e-22 112.5 524 25.4
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 1.5e-22 112.1 181 41.4
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.9e-22 111.7 162 43.8
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 2.5e-22 111.3 183 42.1
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 5.7e-22 110.2 162 41.4
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 1.6e-21 108.6 173 40.5
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 8.2e-21 106.3 502 24.5
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 1.8e-20 105.1 643 24.6
Lsat_1_v5_gn_3_132580 Lactuca sativa HOM05D000186 ORTHO05D004739 3.1e-20 104.4 255 36.9
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 1.1e-17 95.9 345 28.1
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.1e-17 95.9 65 70.8
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 5.5e-17 93.6 565 25.0
Lj2C1008G14 Lonicera japonica HOM05D004112 ORTHO05D004739 2.1e-16 91.7 241 33.6
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.4e-15 89.0 80 47.5
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 7.4e-14 83.2 120 41.7
Lj4A466T15 Lonicera japonica HOM05D004112 ORTHO05D004739 2.8e-13 81.3 105 48.6
Lj3A62T27 Lonicera japonica HOM05D004112 ORTHO05D004739 1.1e-12 79.3 103 45.6
Sc02g0003070 Simmondsia chinensis HOM05D004112 ORTHO05D004739 1.4e-12 79.0 398 27.1
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 5.3e-12 77.0 79 51.9
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 9.1e-12 76.3 181 30.9
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 1.5e-11 75.5 77 48.1
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 3.4e-11 74.3 304 25.3
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.7e-10 72.0 90 41.1
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 3.8e-10 70.9 60 46.7
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 4.2e-09 67.4 80 38.8
BolC2t12020H Brassica oleracea HOM05D004112 ORTHO05D004739 7.4e-06 56.6 151 26.5


User provided reference genes

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