Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011274 Camellia sinensis var. sinensis HOM05D006528 ORTHO05D008117 4.9e-45 184.1 93 100.0
Oeu027056.1 Olea europaea HOM05D006528 ORTHO05D008117 2.0e-38 162.2 94 87.2
TWI14G0454 Tripterygium wilfordii HOM05D006528 ORTHO05D008117 1.7e-37 159.1 88 88.6
Cc02_g20840 Coffea canephora HOM05D006528 ORTHO05D008117 2.2e-37 158.7 94 85.1
Dinv16007 Davidia involucrata HOM05D006528 ORTHO05D008117 2.2e-37 158.7 94 86.2
CiPaw.05G028900 Carya illinoinensis HOM05D006528 ORTHO05D008117 3.7e-37 157.9 88 87.5
Prupe.8G071000 Prunus persica HOM05D006528 ORTHO05D008117 3.7e-37 157.9 97 82.5
Haze_10502 Corylus avellana HOM05D006528 ORTHO05D008117 4.9e-37 157.5 96 82.3
RcHm_v2.0_Chr6g0270691 Rosa chinensis HOM05D006528 ORTHO05D008117 8.3e-37 156.8 87 87.4
vmacro01866 Vaccinium macrocarpon HOM05D006528 ORTHO05D008117 8.3e-37 156.8 95 83.2
Actinidia02398 Actinidia chinensis HOM05D006528 ORTHO05D008117 1.4e-36 156.0 93 83.9
Dinv24144 Davidia involucrata HOM05D006528 ORTHO05D008117 1.4e-36 156.0 93 83.9
Rhsim11G0141900 Rhododendron simsii HOM05D006528 ORTHO05D008117 1.4e-36 156.0 95 83.2
ClCG10G009640 Citrullus lanatus HOM05D006528 ORTHO05D008117 1.9e-36 155.6 82 93.9
FvH4_2g11550 Fragaria vesca HOM05D006528 ORTHO05D008117 2.4e-36 155.2 87 87.4
FAN15G1663 Fragaria x ananassa HOM05D006528 ORTHO05D008117 2.4e-36 155.2 87 87.4
FAN24G2600 Fragaria x ananassa HOM05D006528 ORTHO05D008117 2.4e-36 155.2 87 87.4
FAN27G2089 Fragaria x ananassa HOM05D006528 ORTHO05D008117 2.4e-36 155.2 87 87.4
MD10G1054900 Malus domestica HOM05D006528 ORTHO05D008117 2.4e-36 155.2 88 86.4
COL.COLO4_32404 Corchorus olitorius HOM05D006528 ORTHO05D008117 5.4e-36 154.1 85 91.8
PSO541G2139 Papaver somniferum HOM05D006528 ORTHO05D008117 5.4e-36 154.1 88 85.2
PSO675G1859 Papaver somniferum HOM05D006528 ORTHO05D008117 5.4e-36 154.1 88 85.2
MELO3C018053.2 Cucumis melo HOM05D006528 ORTHO05D008117 9.2e-36 153.3 82 92.7
FAN20G2769 Fragaria x ananassa HOM05D006528 ORTHO05D008117 9.2e-36 153.3 87 86.2
MD05G1048500 Malus domestica HOM05D006528 ORTHO05D008117 9.2e-36 153.3 88 84.1
Sed0017031 Sechium edule HOM05D006528 ORTHO05D008117 9.2e-36 153.3 82 92.7
Aqoxy6G00830 Aquilegia oxysepala HOM05D006528 ORTHO05D008117 1.2e-35 152.9 89 82.0
Atru.chr6.1284 Acer truncatum HOM05D006528 ORTHO05D008117 1.6e-35 152.5 86 87.2
Hma1.2p1_1093F.1_g256310 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 1.6e-35 152.5 87 89.7
Nitab4.5_0001093g0020 Nicotiana tabacum HOM05D006528 ORTHO05D008117 1.6e-35 152.5 92 85.9
Peaxi162Scf00152g00928 Petunia axillaris HOM05D006528 ORTHO05D008117 1.6e-35 152.5 80 93.8
Gohir.D13G049300 Gossypium hirsutum HOM05D006528 ORTHO05D008117 2.0e-35 152.1 88 85.2
Sopen11g019700 Solanum pennellii HOM05D006528 ORTHO05D008117 2.0e-35 152.1 80 95.0
PGSC0003DMG400025320 Solanum tuberosum HOM05D006528 ORTHO05D008117 2.0e-35 152.1 80 95.0
PGSC0003DMG400039300 Solanum tuberosum HOM05D006528 ORTHO05D008117 2.0e-35 152.1 80 95.0
Ciclev10029672m.g Citrus clementina HOM05D006528 ORTHO05D008117 2.7e-35 151.8 84 89.3
Gohir.A13G050500 Gossypium hirsutum HOM05D006528 ORTHO05D008117 2.7e-35 151.8 86 87.2
Manes.07G041500 Manihot esculenta HOM05D006528 ORTHO05D008117 2.7e-35 151.8 84 91.7
Nn5g29836 Nelumbo nucifera HOM05D006528 ORTHO05D008117 3.5e-35 151.4 88 86.4
Nitab4.5_0000001g0270 Nicotiana tabacum HOM05D006528 ORTHO05D008117 3.5e-35 151.4 92 85.9
Thecc.02G128200 Theobroma cacao HOM05D006528 ORTHO05D008117 4.6e-35 151.0 88 85.2
GSVIVG01012516001 Vitis vinifera HOM05D006528 ORTHO05D008117 4.6e-35 151.0 82 90.2
Potri.007G116400 Populus trichocarpa HOM05D006528 ORTHO05D008117 6.0e-35 150.6 88 86.4
PGR142G2367 Punica granatum HOM05D006528 ORTHO05D008117 1.0e-34 149.8 86 84.9
Lj9A347T51 Lonicera japonica HOM05D006528 ORTHO05D008117 1.3e-34 149.4 86 86.0
CAN.G31.4 Capsicum annuum HOM05D006528 ORTHO05D008117 1.7e-34 149.1 80 93.8
CARHR241740 Cardamine hirsuta HOM05D006528 ORTHO05D008117 1.7e-34 149.1 93 79.6
TAR628G0148 Trochodendron aralioides HOM05D006528 ORTHO05D008117 1.7e-34 149.1 80 92.5
CANSAT21G1972 Cannabis sativa HOM05D006528 ORTHO05D008117 3.0e-34 148.3 99 77.8
Eucgr.I02615 Eucalyptus grandis HOM05D006528 ORTHO05D008117 3.0e-34 148.3 82 89.0
Lalb_Chr09g0326921 Lupinus albus HOM05D006528 ORTHO05D008117 3.0e-34 148.3 86 83.7
Sabra07G0094700 Salix brachista HOM05D006528 ORTHO05D008117 3.9e-34 147.9 87 85.1
HanXRQChr08g0227171 Helianthus annuus HOM05D006528 ORTHO05D008117 6.6e-34 147.1 88 81.8
DCAR_003600 Daucus carota HOM05D006528 ORTHO05D008117 8.6e-34 146.7 86 82.6
Duzib248G1107 Durio zibethinus HOM05D006528 ORTHO05D008117 8.6e-34 146.7 83 86.7
Ca_00167_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 1.1e-33 146.4 87 81.6
Lsat_1_v5_gn_7_82720 Lactuca sativa HOM05D006528 ORTHO05D008117 1.5e-33 146.0 82 85.4
Lj4g0001130 Lotus japonicus HOM05D006528 ORTHO05D008117 1.5e-33 146.0 89 82.0
Hund06469 Selenicereus undatus HOM05D006528 ORTHO05D008117 1.5e-33 146.0 85 87.1
arahy.Tifrunner.gnm1.ann1.UT9VTR Arachis hypogaea HOM05D006528 ORTHO05D008117 1.9e-33 145.6 82 85.4
Ca_18387_v3 Cicer arietinum L. HOM05D006528 ORTHO05D008117 3.3e-33 144.8 82 87.8
Glyma.07G182600 Glycine max HOM05D006528 ORTHO05D008117 3.3e-33 144.8 88 79.5
Glyma.08G067300 Glycine max HOM05D006528 ORTHO05D008117 3.3e-33 144.8 88 79.5
Lsat_1_v5_gn_5_110181 Lactuca sativa HOM05D006528 ORTHO05D008117 3.3e-33 144.8 79 89.9
Lalb_Chr16g0382981 Lupinus albus HOM05D006528 ORTHO05D008117 3.3e-33 144.8 85 84.7
MBI16_g06019_MAGBIO Magnolia biondii HOM05D006528 ORTHO05D008117 3.3e-33 144.8 107 73.8
HPP92_001604 Vanilla planifolia HOM05D006528 ORTHO05D008117 3.3e-33 144.8 89 80.9
Medtr4g093660 Medicago truncatula HOM05D006528 ORTHO05D008117 4.3e-33 144.4 87 81.6
Sed0022924 Sechium edule HOM05D006528 ORTHO05D008117 5.6e-33 144.1 93 80.6
Carub.0007s0679 Capsella rubella HOM05D006528 ORTHO05D008117 7.3e-33 143.7 90 80.0
Migut.B00544 Erythranthe guttata HOM05D006528 ORTHO05D008117 7.3e-33 143.7 88 84.1
Sc05g0005550 Simmondsia chinensis HOM05D006528 ORTHO05D008117 7.3e-33 143.7 86 80.2
arahy.Tifrunner.gnm1.ann1.P7ITSZ Arachis hypogaea HOM05D006528 ORTHO05D008117 9.5e-33 143.3 86 81.4
Medtr2g009660 Medicago truncatula HOM05D006528 ORTHO05D008117 9.5e-33 143.3 86 81.4
Ah.01g007370 Amaranthus hybridus HOM05D006528 ORTHO05D008117 1.2e-32 142.9 92 79.3
ATR0767G170 Amborella trichopoda HOM05D006528 ORTHO05D008117 1.2e-32 142.9 90 78.9
arahy.Tifrunner.gnm1.ann1.AY2SMN Arachis hypogaea HOM05D006528 ORTHO05D008117 1.2e-32 142.9 86 81.4
arahy.Tifrunner.gnm1.ann1.QJC347 Arachis hypogaea HOM05D006528 ORTHO05D008117 1.2e-32 142.9 82 84.1
AUR62027098 Chenopodium quinoa HOM05D006528 ORTHO05D008117 1.2e-32 142.9 95 76.8
Phvul.002G213700 Phaseolus vulgaris HOM05D006528 ORTHO05D008117 1.2e-32 142.9 85 81.2
Nn1g05616 Nelumbo nucifera HOM05D006528 ORTHO05D008117 1.6e-32 142.5 79 88.6
Os03g0690000 Oryza sativa ssp. japonica HOM05D006528 ORTHO05D008117 2.1e-32 142.1 86 82.6
Psat1g213920 Pisum sativum HOM05D006528 ORTHO05D008117 2.1e-32 142.1 86 80.2
BcaC09g52175 Brassica carinata HOM05D006528 ORTHO05D008117 2.8e-32 141.7 89 77.5
C01p05070 Brassica napus HOM05D006528 ORTHO05D008117 2.8e-32 141.7 89 77.5
BolC1t00489H Brassica oleracea HOM05D006528 ORTHO05D008117 2.8e-32 141.7 89 77.5
THA.LOC104819510 Tarenaya hassleriana HOM05D006528 ORTHO05D008117 2.8e-32 141.7 80 86.2
Psat7g101760 Pisum sativum HOM05D006528 ORTHO05D008117 3.6e-32 141.4 82 84.1
EL10Ac9g22060 Beta vulgaris HOM05D006528 ORTHO05D008117 4.7e-32 141.0 94 76.6
AUR62030940 Chenopodium quinoa HOM05D006528 ORTHO05D008117 4.7e-32 141.0 95 75.8
ECA234G2655 Erigeron canadensis HOM05D006528 ORTHO05D008117 4.7e-32 141.0 82 81.7
QL11p025380 Quercus lobata HOM05D006528 ORTHO05D008117 6.2e-32 140.6 116 66.4
Zm00001eb053530 Zea mays HOM05D006528 ORTHO05D008117 8.1e-32 140.2 86 82.6
AT4G33640 Arabidopsis thaliana HOM05D006528 ORTHO05D008117 1.4e-31 139.4 82 81.7
SEGI_09895 Sequoiadendron giganteum HOM05D006528 ORTHO05D008117 1.4e-31 139.4 85 82.4
Aa31sc21G60 Aethionema arabicum HOM05D006528 ORTHO05D008117 1.8e-31 139.0 88 78.4
Cfa004847 Carpinus fangiana HOM05D006528 ORTHO05D008117 1.8e-31 139.0 73 91.8
A01p04680 Brassica napus HOM05D006528 ORTHO05D008117 2.3e-31 138.7 82 82.9
BraA01t00451Z Brassica rapa HOM05D006528 ORTHO05D008117 2.3e-31 138.7 82 82.9
Thhalv10026671m.g Eutrema salsugineum HOM05D006528 ORTHO05D008117 2.3e-31 138.7 92 76.1
Sp7g31370 Schrenkiella parvula HOM05D006528 ORTHO05D008117 2.3e-31 138.7 92 76.1
unitig_0.g617 Utricularia gibba HOM05D006528 ORTHO05D008117 3.1e-31 138.3 80 86.2
CDE07G0501 Ceratophyllum demersum HOM05D006528 ORTHO05D008117 4.0e-31 137.9 83 83.1
AL7G17860 Arabidopsis lyrata HOM05D006528 ORTHO05D008117 6.8e-31 137.1 80 83.8
Ah.01g023880 Amaranthus hybridus HOM05D006528 ORTHO05D008117 1.2e-30 136.3 93 75.3
HanXRQChr10g0297761 Helianthus annuus HOM05D006528 ORTHO05D008117 1.2e-30 136.3 79 81.0
Potri.017G042432 Populus trichocarpa HOM05D006528 ORTHO05D008117 1.1e-28 129.8 86 75.6
VMungo0251G1582 Vigna mungo HOM05D006528 ORTHO05D008117 4.1e-28 127.9 94 69.1
Mapoly0189s0006 Marchantia polymorpha HOM05D006528 ORTHO05D008117 7.1e-28 127.1 78 79.5
SMO358G0255 Selaginella moellendorffii HOM05D006528 ORTHO05D008117 2.7e-27 125.2 78 78.2
SalBow6G4989 Salvia bowleyana HOM05D006528 ORTHO05D008117 3.0e-26 121.7 146 52.1
SalBow6G1122 Salvia bowleyana HOM05D006528 ORTHO05D008117 4.3e-25 117.9 132 53.8
Solyc11g044230.3 Solanum lycopersicum HOM05D006528 ORTHO05D008117 1.2e-24 116.3 62 93.5
ECA236G0856 Erigeron canadensis HOM05D006528 ORTHO05D008117 2.8e-24 115.2 68 83.8
MCO12G136 Micromonas commoda HOM05D006528 ORTHO05D008117 2.8e-24 115.2 78 69.2
Pp3c17_23010 Physcomitrium patens HOM05D006528 ORTHO05D008117 4.7e-24 114.4 95 62.1
CsaV3_4G014760 Cucumis sativus L. HOM05D006528 ORTHO05D008117 1.8e-23 112.5 69 84.1
Hma1.2p1_0160F.1_g070933 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 4.7e-16 87.8 55 80.0
Hma1.2p1_1174F.1_g263935 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 4.7e-16 87.8 55 80.0
Hma1.2p1_1518F.1_g288560 Hydrangea macrophylla HOM05D006528 ORTHO05D008117 4.7e-16 87.8 55 80.0
PRCOL_00002361 Prasinoderma coloniale HOM05D006528 ORTHO05D008117 3.1e-15 85.1 87 52.9
Actinidia00310 Actinidia chinensis HOM05D006528 ORTHO05D008117 2.0e-14 82.4 49 83.7
Gorai.013G055100 Gossypium raimondii HOM05D006528 ORTHO05D008117 4.6e-11 71.2 42 81.0


User provided reference genes

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