Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 4.7e-100 367.9 183 100.0
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 4.1e-96 354.8 206 88.8
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 1.9e-85 319.3 204 77.0
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 6.8e-83 310.8 204 76.5
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 4.4e-82 308.1 205 77.1
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.2e-81 305.8 204 75.0
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 8.3e-81 303.9 205 76.6
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.9e-78 295.4 203 72.4
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 1.5e-74 283.1 205 68.3
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 2.0e-74 282.7 202 70.8
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 2.0e-74 282.7 204 71.1
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 2.6e-74 282.3 203 69.5
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 4.4e-74 281.6 203 69.0
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 5.8e-74 281.2 203 69.5
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 9.8e-74 280.4 203 69.0
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 9.8e-74 280.4 203 69.0
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 1.7e-73 279.6 205 71.2
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 2.9e-73 278.9 205 70.7
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 4.9e-73 278.1 204 68.6
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 4.9e-73 278.1 204 71.1
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 8.3e-73 277.3 204 68.6
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 8.3e-73 277.3 204 68.1
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 1.1e-72 276.9 203 68.5
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 1.4e-72 276.6 204 69.1
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 1.4e-72 276.6 192 71.4
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.8e-72 276.2 203 68.0
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 2.4e-72 275.8 204 68.6
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 3.2e-72 275.4 206 69.4
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 4.1e-72 275.0 204 67.2
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 4.1e-72 275.0 205 69.8
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 5.4e-72 274.6 204 67.6
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 7.0e-72 274.2 204 67.6
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 9.2e-72 273.9 202 66.3
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 9.2e-72 273.9 204 66.7
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 1.2e-71 273.5 204 69.1
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 1.2e-71 273.5 204 67.2
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 1.2e-71 273.5 203 67.0
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 1.6e-71 273.1 204 67.2
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 2.0e-71 272.7 198 69.2
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 2.0e-71 272.7 204 69.1
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 2.7e-71 272.3 204 69.6
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 1.0e-70 270.4 204 69.6
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 1.7e-70 269.6 205 64.9
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 1.7e-70 269.6 202 69.8
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 1.7e-70 269.6 204 67.2
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 2.3e-70 269.2 203 68.0
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 2.3e-70 269.2 203 67.0
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 3.0e-70 268.9 204 64.7
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 3.0e-70 268.9 198 68.2
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 3.0e-70 268.9 205 68.3
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 3.9e-70 268.5 203 65.5
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 3.9e-70 268.5 198 67.7
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 5.0e-70 268.1 203 66.0
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 5.0e-70 268.1 203 66.0
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 8.6e-70 267.3 205 64.4
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 8.6e-70 267.3 206 67.5
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 8.6e-70 267.3 203 69.5
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 1.1e-69 266.9 203 65.5
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 1.1e-69 266.9 203 66.5
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 1.5e-69 266.5 227 61.7
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 1.5e-69 266.5 199 67.3
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 1.9e-69 266.2 204 66.2
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 2.5e-69 265.8 203 68.5
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 2.5e-69 265.8 203 65.0
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 2.5e-69 265.8 204 66.2
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 2.5e-69 265.8 203 67.0
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 3.3e-69 265.4 206 66.5
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 4.3e-69 265.0 206 66.0
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 7.3e-69 264.2 204 65.7
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 9.5e-69 263.8 203 65.5
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 1.6e-68 263.1 203 64.5
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 1.6e-68 263.1 203 65.0
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 1.6e-68 263.1 202 66.3
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 2.1e-68 262.7 203 65.0
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 2.8e-68 262.3 202 64.9
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 2.8e-68 262.3 203 65.0
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 3.6e-68 261.9 203 64.5
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 4.7e-68 261.5 201 66.7
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 4.7e-68 261.5 203 64.5
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 6.2e-68 261.2 203 65.0
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 6.2e-68 261.2 203 65.0
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 6.2e-68 261.2 203 65.0
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 6.2e-68 261.2 203 63.5
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 8.0e-68 260.8 203 65.0
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 8.0e-68 260.8 198 68.2
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 1.1e-67 260.4 203 65.5
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 1.1e-67 260.4 200 66.5
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 1.8e-67 259.6 203 62.6
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 1.8e-67 259.6 203 62.6
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 2.3e-67 259.2 203 64.5
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 6.8e-67 257.7 205 63.9
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 8.9e-67 257.3 205 65.9
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 8.9e-67 257.3 201 65.7
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 1.2e-66 256.9 203 64.0
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 1.5e-66 256.5 207 65.2
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 3.4e-66 255.4 201 65.2
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.4e-66 255.0 204 65.7
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 5.8e-66 254.6 203 66.0
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 5.8e-66 254.6 197 67.5
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 7.5e-66 254.2 202 63.9
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 1.3e-65 253.4 202 64.4
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 2.2e-65 252.7 213 60.1
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 2.2e-65 252.7 203 63.1
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 2.2e-65 252.7 194 66.5
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 2.9e-65 252.3 203 63.5
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 2.9e-65 252.3 203 63.5
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 4.9e-65 251.5 202 63.9
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 4.9e-65 251.5 256 53.5
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 8.3e-65 250.8 202 62.9
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 3.2e-64 248.8 205 62.0
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 7.0e-64 247.7 208 60.6
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 1.2e-63 246.9 202 61.4
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 1.6e-63 246.5 202 62.9
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 2.3e-62 242.7 204 61.8
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 8.1e-60 234.2 191 61.3
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 5.2e-59 231.5 204 54.9
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 8.9e-59 230.7 141 81.6
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 3.2e-56 222.2 206 55.8
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.7e-54 216.5 140 75.7
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.0e-54 215.7 140 78.6
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 2.5e-53 212.6 209 51.7
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 1.2e-52 210.3 138 73.9
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 1.8e-51 206.5 208 51.0
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 9.9e-50 200.7 208 52.9
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 2.2e-49 199.5 140 70.7
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 3.8e-49 198.7 206 50.0
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 4.9e-49 198.4 208 51.0
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 8.4e-49 197.6 150 68.7
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 5.6e-45 184.9 205 54.1
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 2.4e-43 179.5 129 69.0
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 3.0e-38 162.5 201 44.3
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 4.5e-34 148.7 118 63.6
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.3e-28 130.6 111 63.1
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 3.1e-27 125.9 128 51.6
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.2e-26 124.0 182 44.0
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 6.4e-25 118.2 191 38.2
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 3.2e-24 115.9 77 68.8
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 1.3e-22 110.5 196 36.7
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 5.1e-22 108.6 199 35.7
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 9.6e-21 104.4 71 74.6
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 6.2e-20 101.7 69 71.0
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 8.4e-17 91.3 80 58.8
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 2.3e-14 83.2 64 64.1
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 3.9e-14 82.4 50 80.0
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.2e-12 76.6 42 78.6
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.5e-10 70.5 51 66.7
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.5e-10 70.5 51 66.7
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 5.9e-10 68.6 72 55.6
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 5.9e-10 68.6 67 50.7
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 2.2e-09 66.6 104 37.5
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 3.8e-09 65.9 44 68.2
Rhsim04G0170200 Rhododendron simsii HOM05D000866 ORTHO05D000673 8.8e-06 54.7 34 73.5


User provided reference genes

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