Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 4.4e-223 777.7 413 100.0
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.7e-161 573.2 295 92.5
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.2e-161 572.8 294 92.5
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 7.0e-152 541.2 309 83.8
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 2.9e-150 535.8 309 80.9
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 8.5e-150 534.3 309 81.9
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 4.2e-149 531.9 309 81.2
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 5.5e-149 531.6 309 81.6
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 5.5e-149 531.6 309 80.3
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 7.2e-149 531.2 309 80.3
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.1e-148 529.6 309 79.9
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 2.7e-148 529.3 298 82.9
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 4.7e-148 528.5 309 80.6
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 8.0e-148 527.7 309 79.9
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.8e-147 526.6 309 79.6
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 6.7e-147 524.6 309 79.3
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 6.7e-147 524.6 310 78.7
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.4e-146 521.9 309 79.3
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 7.5e-146 521.2 309 78.0
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 1.3e-145 520.4 309 77.3
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 1.7e-145 520.0 309 78.3
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.7e-145 520.0 309 78.3
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 2.2e-145 519.6 309 78.0
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 3.7e-145 518.8 310 79.0
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 3.7e-145 518.8 309 79.3
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 6.3e-145 518.1 309 76.7
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 6.3e-145 518.1 309 78.0
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 6.3e-145 518.1 310 78.4
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 8.2e-145 517.7 309 78.6
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 1.1e-144 517.3 309 77.3
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 1.4e-144 516.9 309 79.3
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.4e-144 516.9 309 78.0
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 1.4e-144 516.9 309 78.3
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.4e-144 516.2 309 79.0
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 5.3e-144 515.0 309 77.0
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 7.0e-144 514.6 308 79.5
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 7.0e-144 514.6 309 77.7
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.2e-143 513.8 309 77.3
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 1.6e-143 513.5 309 78.3
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 2.0e-143 513.1 309 77.7
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 2.0e-143 513.1 309 78.0
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 4.5e-143 511.9 308 77.9
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 4.5e-143 511.9 309 76.1
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 1.0e-142 510.8 309 75.7
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 1.7e-142 510.0 309 78.0
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 1.7e-142 510.0 309 77.3
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 2.2e-142 509.6 304 78.9
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.9e-142 509.2 309 78.6
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 5.0e-142 508.4 309 76.4
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 6.5e-142 508.1 309 78.6
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 6.5e-142 508.1 309 77.7
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 8.5e-142 507.7 309 78.0
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 8.5e-142 507.7 304 79.3
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 1.5e-141 506.9 309 75.4
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 1.5e-141 506.9 309 77.3
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 5.5e-141 505.0 309 77.0
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 1.2e-140 503.8 309 75.1
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 1.2e-140 503.8 309 75.1
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.2e-140 503.8 309 74.8
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 1.2e-140 503.8 309 76.7
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 1.6e-140 503.4 310 75.5
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 1.6e-140 503.4 302 78.5
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.6e-140 503.4 308 76.6
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 2.7e-140 502.7 310 75.2
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 2.7e-140 502.7 310 77.1
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 3.6e-140 502.3 308 76.6
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 4.7e-140 501.9 304 78.0
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 1.4e-139 500.4 310 74.8
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 1.4e-139 500.4 309 74.8
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 6.8e-139 498.0 310 74.5
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 1.2e-138 497.3 308 75.0
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 1.5e-138 496.9 309 74.4
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 2.0e-138 496.5 308 74.7
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 2.0e-138 496.5 308 74.7
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 2.6e-138 496.1 313 74.4
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 3.4e-138 495.7 308 75.0
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 1.7e-137 493.4 311 75.6
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 3.7e-137 492.3 309 75.1
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 6.3e-137 491.5 309 75.4
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 6.3e-137 491.5 309 74.4
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.4e-136 490.3 313 74.1
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 1.4e-136 490.3 309 74.8
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 2.4e-136 489.6 309 74.8
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.4e-136 489.6 309 74.1
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 4.1e-136 488.8 309 73.8
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 4.1e-136 488.8 298 76.8
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 7.0e-136 488.0 312 73.4
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 9.1e-136 487.6 309 75.4
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 1.6e-135 486.9 310 76.1
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 2.0e-135 486.5 313 74.4
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 2.0e-135 486.5 309 73.5
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 2.0e-135 486.5 302 77.2
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 2.0e-135 486.5 309 75.1
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 2.7e-135 486.1 309 74.4
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 2.9e-134 482.6 309 72.8
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.1e-133 480.7 309 74.1
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 2.5e-133 479.6 309 72.5
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 7.2e-133 478.0 310 71.9
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 7.2e-133 478.0 309 74.4
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 9.4e-133 477.6 309 73.1
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 9.4e-133 477.6 309 71.8
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 2.1e-132 476.5 309 71.8
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 6.1e-132 474.9 310 72.9
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 5.2e-131 471.9 310 71.3
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 6.8e-131 471.5 310 71.6
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 9.8e-130 467.6 317 73.8
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.7e-129 466.8 309 71.8
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.8e-128 463.4 310 69.4
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 3.5e-127 459.1 309 70.9
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.9e-127 458.4 274 78.8
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 5.9e-127 458.4 308 71.4
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 2.3e-126 456.4 310 67.4
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 8.0e-124 448.0 312 68.9
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 1.2e-122 444.1 308 66.2
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 4.9e-121 438.7 302 67.9
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 7.0e-120 434.9 310 69.0
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 2.0e-119 433.3 307 68.4
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 2.3e-118 429.9 309 66.0
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 1.1e-117 427.6 310 65.5
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 2.5e-117 426.4 310 65.2
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 5.6e-117 425.2 315 65.1
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.3e-115 419.9 232 83.2
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 2.6e-114 416.4 317 65.3
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 6.4e-113 411.8 311 63.0
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.9e-112 410.2 297 66.7
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 9.2e-112 407.9 305 66.6
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.0e-110 402.9 270 73.0
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 2.3e-107 393.3 320 59.7
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 2.7e-103 379.8 312 59.9
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 3.5e-103 379.4 309 61.2
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 3.6e-100 369.4 206 85.0
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 6.8e-99 365.2 198 85.4
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 3.2e-96 356.3 310 58.7
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 2.8e-92 343.2 198 78.3
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 2.1e-87 327.0 219 71.2
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 3.5e-87 326.2 177 84.2
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 5.6e-85 318.9 231 68.0
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.1e-75 288.1 222 60.8
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 1.7e-73 280.8 397 40.8
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.2e-72 276.6 229 61.1
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 3.3e-69 266.5 343 42.3
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 4.3e-69 266.2 302 43.4
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 2.8e-68 263.5 185 69.7
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 1.4e-64 251.1 221 57.9
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 2.6e-58 230.3 175 62.9
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 2.2e-57 227.3 311 40.5
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 8.5e-49 198.7 348 36.2
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 4.2e-48 196.4 125 75.2
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 8.8e-46 188.7 144 64.6
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.7e-36 156.8 148 56.1
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 6.7e-30 136.0 116 57.8
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.9e-25 120.6 64 84.4
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 7.5e-21 105.9 86 61.6
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 1.7e-20 104.8 57 80.7
CSS0028348 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 1.0e-09 68.9 58 58.6
CSS0011900 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 1.9e-08 64.7 58 58.6
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 5.2e-06 56.6 43 62.8


User provided reference genes

Program Settings