Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 9.4e-278 959.5 476 100.0
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.6e-272 942.2 476 98.3
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 3.8e-271 937.6 477 98.1
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 4.2e-233 811.2 483 83.6
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 1.9e-225 785.8 490 81.4
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 3.0e-223 778.5 484 81.6
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 4.3e-222 774.6 484 79.3
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 3.6e-221 771.5 483 79.7
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 6.4e-218 760.8 483 77.8
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 1.1e-217 760.0 482 76.6
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 1.1e-217 760.0 482 76.6
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.2e-216 756.5 485 77.9
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.8e-215 752.7 483 76.0
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 2.3e-215 752.3 482 75.7
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 5.1e-215 751.1 483 76.6
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 3.3e-214 748.4 469 81.2
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.3e-213 746.5 483 75.4
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 1.6e-213 746.1 483 76.6
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 6.2e-213 744.2 482 76.6
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 9.0e-212 740.3 483 75.8
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 5.8e-211 737.6 477 75.7
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.0e-210 736.9 483 74.3
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 1.0e-210 736.9 483 74.7
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 2.9e-210 735.3 483 75.6
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 3.8e-210 734.9 483 74.7
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 6.5e-210 734.2 481 73.8
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 1.4e-209 733.0 510 71.4
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 2.5e-209 732.3 483 74.7
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 4.2e-209 731.5 484 75.6
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 7.1e-209 730.7 485 75.1
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 9.3e-209 730.3 482 75.5
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 2.1e-208 729.2 483 74.7
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.3e-207 726.5 483 74.7
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 3.0e-207 725.3 476 75.2
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 6.7e-207 724.2 483 74.9
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 8.7e-207 723.8 477 74.4
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 2.5e-206 722.2 483 73.9
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 1.3e-205 719.9 478 73.4
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 2.8e-205 718.8 483 72.7
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 4.8e-205 718.0 476 74.4
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 6.3e-205 717.6 476 73.1
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 1.4e-204 716.5 476 72.7
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 6.9e-204 714.1 480 75.8
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 1.5e-203 713.0 476 72.9
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 1.5e-203 713.0 483 74.7
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 1.5e-203 713.0 479 74.7
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 4.5e-203 711.4 476 72.7
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 5.9e-203 711.1 479 73.7
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 1.3e-202 709.9 476 71.6
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 1.3e-202 709.9 482 74.7
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.7e-202 709.5 483 74.1
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 2.2e-202 709.1 484 72.5
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 1.1e-201 706.8 476 73.3
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 1.1e-201 706.8 442 76.9
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 1.9e-201 706.1 483 71.6
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 4.2e-201 704.9 487 71.0
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 4.2e-201 704.9 477 72.7
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 9.3e-201 703.7 475 72.0
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 1.6e-200 703.0 476 72.7
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 2.1e-200 702.6 484 72.3
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 2.1e-200 702.6 476 72.7
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.0e-199 700.3 487 70.8
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 1.3e-199 699.9 499 69.5
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 1.3e-199 699.9 484 71.9
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 1.8e-199 699.5 483 72.0
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 3.3e-198 695.3 477 71.5
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 5.7e-198 694.5 483 70.4
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 5.7e-198 694.5 483 70.6
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 1.3e-197 693.3 484 70.0
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 4.8e-197 691.4 476 71.6
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 6.3e-197 691.0 483 70.8
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 6.3e-197 691.0 484 70.5
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 8.2e-197 690.6 477 70.9
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 9.0e-196 687.2 484 69.6
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 1.2e-195 686.8 477 70.2
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 2.0e-195 686.0 496 69.4
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 2.6e-195 685.6 480 70.0
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 1.0e-194 683.7 484 70.5
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 2.2e-194 682.6 477 70.2
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 5.0e-194 681.4 480 69.4
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 6.5e-194 681.0 569 61.9
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 8.5e-194 680.6 477 70.2
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 1.4e-193 679.9 520 66.0
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 1.9e-193 679.5 477 69.4
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 2.5e-193 679.1 507 67.9
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 3.2e-193 678.7 476 71.6
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 4.2e-193 678.3 477 70.2
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 4.2e-193 678.3 477 70.2
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 7.2e-193 677.6 476 70.0
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 3.9e-191 671.8 481 68.8
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 5.1e-191 671.4 479 69.9
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 1.1e-190 670.2 501 67.1
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 2.8e-189 665.6 486 67.3
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 1.4e-188 663.3 489 70.3
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 6.9e-188 661.0 476 68.9
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 1.2e-184 650.2 488 68.4
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 2.1e-184 649.4 460 71.1
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 2.7e-184 649.0 475 66.9
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.0e-183 647.1 415 75.4
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 8.8e-183 644.0 475 66.9
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 1.1e-182 643.7 486 66.5
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 1.3e-181 640.2 432 74.5
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 1.7e-181 639.8 495 63.8
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 1.4e-180 636.7 475 66.3
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 2.5e-177 625.9 428 71.3
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 3.2e-177 625.5 517 63.1
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.2e-176 623.6 552 61.2
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 4.7e-176 621.7 415 73.3
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.8e-170 602.1 486 60.7
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 6.1e-168 594.7 476 63.4
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 6.8e-167 591.3 485 63.5
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 2.6e-166 589.3 413 74.1
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 1.8e-164 583.2 473 60.9
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 1.5e-161 573.5 413 70.0
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 3.2e-161 572.4 492 59.1
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 2.1e-160 569.7 482 59.1
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 9.5e-145 517.7 357 72.3
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 4.1e-140 502.3 490 56.1
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 5.2e-135 485.3 483 54.0
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 2.1e-99 367.1 251 68.9
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 6.7e-98 362.1 598 38.3
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 3.8e-93 346.3 517 41.4
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 6.5e-93 345.5 258 67.8
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 1.3e-85 321.2 213 77.9
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.7e-77 294.3 182 73.1
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.4e-74 284.6 255 56.1
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 1.8e-74 284.3 381 47.5
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.9e-74 283.1 210 62.9
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 8.2e-72 275.4 539 34.7
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 7.9e-67 258.8 188 76.6
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 8.2e-64 248.8 182 64.3
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.6e-62 244.6 249 53.0
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 2.4e-55 220.7 477 32.3
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 8.3e-48 195.7 171 61.4
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 4.5e-46 189.9 432 33.1
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 2.6e-41 174.1 384 33.3
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.7e-40 171.4 447 28.9
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.7e-40 171.4 423 29.6
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 7.5e-33 146.0 212 43.9
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 9.2e-31 139.0 218 39.9
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 2.4e-23 114.4 187 43.3
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.8e-18 98.2 69 75.4
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 2.6e-17 94.4 69 71.0
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.4e-17 94.0 132 40.9
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 1.9e-12 78.2 70 62.9
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 4.4e-09 67.0 107 39.3
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 4.4e-09 67.0 70 52.9
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 5.8e-09 66.6 69 53.6
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 8.4e-08 62.8 83 50.6
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 5.4e-07 60.1 70 48.6
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 2.7e-06 57.8 48 47.9


User provided reference genes

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