Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 1.5e-253 879.0 443 100.0
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 1.5e-200 703.0 443 81.0
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 3.3e-200 701.8 444 81.1
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 1.8e-193 679.5 436 81.9
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.8e-193 679.5 435 79.5
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 8.7e-193 677.2 438 78.3
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 2.8e-191 672.2 438 78.1
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 8.2e-191 670.6 443 78.8
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 2.0e-189 666.0 431 78.2
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 5.5e-187 657.9 433 77.6
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 2.1e-186 656.0 443 75.6
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 8.7e-185 650.6 430 76.7
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 2.5e-184 649.0 432 76.6
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 4.3e-184 648.3 444 75.2
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 1.3e-183 646.7 434 74.9
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 3.7e-183 645.2 430 75.6
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 3.7e-183 645.2 435 75.9
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 8.2e-183 644.0 432 76.2
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 8.2e-183 644.0 430 76.0
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 1.4e-182 643.3 431 76.1
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 4.1e-182 641.7 436 75.0
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 6.9e-182 641.0 428 77.1
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 6.9e-182 641.0 427 76.6
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 6.9e-182 641.0 426 76.3
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 9.0e-182 640.6 434 75.8
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 9.0e-182 640.6 436 75.5
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 1.2e-181 640.2 430 75.3
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 1.5e-181 639.8 432 74.3
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 3.4e-181 638.6 434 74.4
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 4.5e-181 638.3 439 74.7
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 7.7e-181 637.5 439 74.3
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 7.7e-181 637.5 429 75.5
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 7.7e-181 637.5 431 74.5
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 1.0e-180 637.1 442 73.1
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 3.8e-180 635.2 432 75.0
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 5.0e-180 634.8 429 75.3
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 5.0e-180 634.8 558 62.9
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 1.1e-179 633.6 430 74.2
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 4.2e-179 631.7 518 66.0
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.2e-178 630.2 426 75.1
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 2.1e-178 629.4 420 76.0
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 2.7e-178 629.0 440 73.0
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 3.6e-178 628.6 429 74.1
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 4.6e-178 628.2 434 72.6
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 4.6e-178 628.2 460 71.5
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 6.1e-178 627.9 441 73.7
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 1.8e-177 626.3 430 74.2
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 2.3e-177 625.9 436 73.4
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 3.0e-177 625.5 434 74.4
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.9e-177 625.2 438 73.3
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 5.1e-177 624.8 429 74.8
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 6.7e-177 624.4 436 73.4
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.7e-177 624.4 431 73.1
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 1.5e-176 623.2 429 73.9
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 1.5e-176 623.2 434 75.3
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 2.0e-176 622.9 456 70.8
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.0e-176 622.9 431 73.1
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 2.0e-176 622.9 431 73.1
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 4.3e-176 621.7 431 75.4
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 4.3e-176 621.7 411 75.9
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 5.7e-176 621.3 431 74.5
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.7e-176 621.3 438 72.8
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 5.7e-176 621.3 429 73.7
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 1.7e-175 619.8 431 73.8
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 1.7e-175 619.8 430 74.0
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 2.2e-175 619.4 429 73.9
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 2.2e-175 619.4 429 73.9
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 2.8e-175 619.0 445 71.9
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 2.8e-175 619.0 418 75.4
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 3.7e-175 618.6 430 74.0
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 3.7e-175 618.6 430 74.0
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 4.8e-175 618.2 431 73.1
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 4.8e-175 618.2 431 73.1
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 4.8e-175 618.2 452 71.2
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 8.2e-175 617.5 432 73.1
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 8.2e-175 617.5 432 73.1
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 8.2e-175 617.5 431 73.1
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 8.2e-175 617.5 432 73.1
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 1.1e-174 617.1 409 75.6
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 1.1e-174 617.1 400 76.8
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 1.1e-174 617.1 400 76.8
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 1.1e-174 617.1 431 72.9
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 2.4e-174 615.9 416 74.8
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 2.4e-174 615.9 431 72.9
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 3.1e-174 615.5 383 78.9
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 4.1e-174 615.1 433 72.7
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 5.3e-174 614.8 432 72.7
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 6.9e-174 614.4 398 77.1
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 9.1e-174 614.0 411 75.9
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 9.1e-174 614.0 435 73.1
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 1.2e-173 613.6 430 73.5
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 1.2e-173 613.6 431 72.6
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 1.5e-173 613.2 423 73.3
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 1.5e-173 613.2 441 71.2
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 2.6e-173 612.5 416 73.8
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 2.6e-173 612.5 430 72.1
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 2.6e-173 612.5 425 73.6
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 2.6e-173 612.5 399 76.4
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.5e-173 611.7 426 74.6
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 7.7e-173 610.9 386 78.2
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 1.0e-172 610.5 415 73.3
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 1.3e-172 610.1 415 73.3
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 1.7e-172 609.8 430 71.9
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 2.2e-172 609.4 425 72.5
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 2.2e-172 609.4 436 71.6
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.2e-172 609.4 411 74.9
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 3.8e-172 608.6 426 74.4
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 5.0e-172 608.2 429 72.0
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 6.5e-172 607.8 430 70.9
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 6.5e-172 607.8 426 74.2
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 1.4e-171 606.7 431 70.8
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 1.4e-171 606.7 430 71.4
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 1.9e-171 606.3 428 73.6
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 2.5e-171 605.9 432 72.9
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.5e-171 605.9 426 73.9
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 1.2e-170 603.6 380 77.9
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 4.7e-170 601.7 431 71.7
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 7.9e-170 600.9 382 76.7
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 1.4e-169 600.1 433 71.4
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 5.1e-169 598.2 478 66.5
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 4.8e-167 591.7 441 70.1
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 7.0e-166 587.8 433 70.2
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.0e-164 581.6 465 67.7
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 6.1e-162 574.7 426 71.8
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 8.0e-162 574.3 429 67.8
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 2.3e-161 572.8 433 69.5
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 3.9e-161 572.0 398 72.4
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 1.1e-160 570.5 380 75.8
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 1.7e-159 566.6 395 71.9
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 2.2e-159 566.2 379 73.9
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 4.1e-158 562.0 417 68.8
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 1.0e-153 547.4 348 77.0
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.2e-152 543.9 431 66.8
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 2.2e-151 539.7 338 79.3
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 3.8e-148 528.9 350 78.9
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 1.2e-146 523.9 344 77.9
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 6.1e-146 521.5 363 72.7
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.4e-145 520.4 351 75.8
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 3.0e-145 519.2 346 72.5
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 8.8e-145 517.7 363 72.2
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 3.7e-135 485.7 370 69.2
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 4.9e-135 485.3 348 70.7
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 1.1e-134 484.2 397 63.5
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 2.3e-132 476.5 376 63.6
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 1.9e-131 473.4 370 63.2
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 3.1e-129 466.1 431 59.2
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 4.4e-128 462.2 365 64.7
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 2.4e-118 429.9 330 65.5
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 2.5e-115 419.9 261 78.5
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 1.1e-110 404.4 267 79.0
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 4.6e-109 399.1 299 66.9
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 3.4e-104 382.9 263 71.5
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 2.1e-90 337.0 234 74.4
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 1.5e-88 330.9 233 73.0
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 4.3e-83 312.8 185 84.3
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.4e-81 307.8 215 71.6
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.8e-80 302.4 192 80.2
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 1.9e-78 297.4 367 44.7
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 9.6e-75 285.0 355 47.3
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 2.6e-64 250.4 155 74.2
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 1.0e-60 238.4 146 79.5
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 5.1e-60 236.1 187 63.1
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 5.1e-60 236.1 187 63.1
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 1.4e-57 228.0 220 60.0
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.7e-53 213.8 244 54.5
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 2.2e-39 167.5 158 55.1
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 1.0e-36 158.7 99 78.8
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.4e-28 131.7 222 43.7
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.8e-28 131.3 296 36.8
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 3.1e-25 120.6 86 70.9
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 1.9e-22 111.3 60 93.3
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 8.3e-18 95.9 82 62.2
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 2.4e-17 94.4 59 81.4
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 2.4e-17 94.4 59 81.4
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 1.1e-14 85.5 79 58.2
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 9.5e-14 82.4 90 48.9
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 4.0e-12 77.0 46 78.3
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 1.2e-11 75.5 50 72.0
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 1.5e-11 75.1 47 80.9
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 1.7e-10 71.6 42 85.7
C05p40290 Brassica napus HOM05D003701 ORTHO05D041413 7.8e-08 62.8 74 50.0
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 2.3e-07 61.2 74 47.3
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 5.0e-07 60.1 74 48.6
MBI09_g06128_MAGBIO Magnolia biondii HOM05D018637 ORTHO05D012924 5.0e-07 60.1 42 64.3
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 5.6e-06 56.6 166 31.9
CBR_g74262 Chara braunii HOM05D003701 ORTHO05D004771 7.3e-06 56.2 43 65.1


User provided reference genes

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