Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.7e-67 258.1 131 100.0
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.7e-67 258.1 131 100.0
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.6e-65 252.7 131 96.9
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.9e-64 248.1 131 95.4
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 7.3e-39 164.1 128 71.1
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 1.2e-33 146.7 128 58.6
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 2.1e-33 146.0 125 61.6
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.7e-33 145.6 126 64.3
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 3.9e-32 141.7 126 64.3
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 8.7e-32 140.6 119 64.7
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 1.1e-31 140.2 125 60.8
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 1.9e-31 139.4 122 61.5
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 9.6e-31 137.1 127 62.2
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.3e-30 136.7 125 60.8
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 2.1e-30 136.0 125 61.6
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 4.8e-30 134.8 131 58.8
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 4.8e-30 134.8 125 61.6
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.1e-29 132.1 125 60.0
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 9.0e-29 130.6 125 53.6
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.2e-28 130.2 125 53.6
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.2e-28 130.2 125 59.2
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 2.6e-28 129.0 123 56.9
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 3.4e-28 128.6 126 58.7
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 4.5e-28 128.3 134 58.2
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.8e-28 127.9 125 59.2
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 5.8e-28 127.9 127 57.5
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 7.6e-28 127.5 126 56.3
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 9.9e-28 127.1 125 57.6
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 2.2e-27 125.9 128 61.7
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 2.9e-27 125.6 126 56.3
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 6.4e-27 124.4 123 57.7
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 1.4e-26 123.2 127 55.1
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 9.3e-26 120.6 126 57.9
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.6e-25 119.8 126 54.8
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.6e-25 119.8 132 55.3
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 2.1e-25 119.4 121 53.7
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.1e-25 119.4 126 57.1
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 4.6e-25 118.2 121 57.9
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.0e-24 117.1 132 54.5
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 1.8e-24 116.3 129 55.8
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 2.3e-24 115.9 127 52.0
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 2.3e-24 115.9 127 54.3
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 8.7e-24 114.0 139 51.1
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 1.1e-23 113.6 96 64.6
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.5e-23 113.2 131 51.1
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 2.5e-23 112.5 129 54.3
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 4.3e-23 111.7 128 55.5
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 4.3e-23 111.7 122 57.4
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 5.6e-23 111.3 123 52.0
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 7.4e-23 110.9 129 52.7
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 1.6e-22 109.8 123 51.2
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 3.7e-22 108.6 121 52.9
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.7e-22 108.6 127 54.3
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 4.8e-22 108.2 127 48.8
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 6.2e-22 107.8 124 52.4
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 6.2e-22 107.8 131 48.9
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 6.2e-22 107.8 126 49.2
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 6.2e-22 107.8 116 52.6
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 8.1e-22 107.5 119 55.5
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 1.8e-21 106.3 130 49.2
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 1.8e-21 106.3 128 50.8
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 3.1e-21 105.5 132 49.2
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 4.0e-21 105.1 133 51.1
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 6.9e-21 104.4 135 48.9
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 9.0e-21 104.0 149 47.7
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 1.2e-20 103.6 132 49.2
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 1.2e-20 103.6 132 48.5
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.5e-20 103.2 122 53.3
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 2.0e-20 102.8 137 49.6
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 4.5e-20 101.7 128 49.2
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 5.8e-20 101.3 123 48.0
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 7.6e-20 100.9 117 50.4
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 1.3e-19 100.1 123 50.4
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 1.3e-19 100.1 123 50.4
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.3e-19 100.1 123 47.2
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 1.3e-19 100.1 127 49.6
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 1.7e-19 99.8 128 50.8
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.2e-19 99.4 120 46.7
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 3.8e-19 98.6 117 47.9
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 4.9e-19 98.2 123 48.8
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 6.5e-19 97.8 116 50.0
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 1.1e-18 97.1 122 49.2
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.4e-18 96.7 106 55.7
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 1.9e-18 96.3 127 44.1
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 2.5e-18 95.9 141 46.1
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 3.2e-18 95.5 125 49.6
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.2e-18 95.5 125 44.0
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 7.1e-18 94.4 117 47.9
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 9.3e-18 94.0 123 48.0
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.2e-17 93.6 125 43.2
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 1.2e-17 93.6 123 48.0
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 1.6e-17 93.2 123 48.0
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 2.7e-17 92.4 124 48.4
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 3.5e-17 92.0 143 44.1
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.6e-17 91.7 106 54.7
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 6.0e-17 91.3 126 46.8
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 6.0e-17 91.3 135 47.4
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 7.9e-17 90.9 125 45.6
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.0e-16 90.5 125 47.2
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 1.0e-16 90.5 125 47.2
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.3e-16 90.1 143 44.1
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 1.3e-16 90.1 132 43.9
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.8e-16 89.7 125 42.4
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 2.3e-16 89.4 127 45.7
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 3.0e-16 89.0 130 46.9
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 3.0e-16 89.0 126 42.9
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.9e-16 88.6 124 45.2
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 5.1e-16 88.2 123 45.5
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 5.1e-16 88.2 122 45.9
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 6.7e-16 87.8 124 44.4
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 6.7e-16 87.8 124 44.4
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 8.7e-16 87.4 125 46.4
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 1.1e-15 87.0 124 47.6
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 1.1e-15 87.0 124 47.6
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 1.1e-15 87.0 124 47.6
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 1.9e-15 86.3 124 42.7
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 1.9e-15 86.3 120 50.0
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 2.5e-15 85.9 130 44.6
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 2.5e-15 85.9 126 44.4
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 4.3e-15 85.1 122 45.1
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 4.3e-15 85.1 122 45.1
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 9.6e-15 84.0 108 45.4
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 9.6e-15 84.0 138 39.9
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.6e-14 83.2 125 44.0
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.1e-14 82.8 124 46.0
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.1e-14 82.8 124 46.0
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 4.8e-14 81.6 146 41.1
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 4.8e-14 81.6 125 43.2
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 4.8e-14 81.6 116 42.2
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 4.8e-14 81.6 129 45.0
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.1e-13 80.5 169 37.9
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.4e-13 80.1 127 44.1
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.4e-13 79.3 114 46.5
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 2.4e-13 79.3 128 39.8
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 4.1e-13 78.6 119 45.4
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 5.3e-13 78.2 117 46.2
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.2e-12 77.0 115 43.5
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 2.6e-12 75.9 126 38.1
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 2.6e-12 75.9 136 38.2
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 4.5e-12 75.1 129 38.0
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 4.5e-12 75.1 166 32.5
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 5.9e-12 74.7 133 39.8
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 5.9e-12 74.7 118 44.1
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 7.6e-12 74.3 134 37.3
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 1.0e-11 73.9 85 47.1
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 1.3e-11 73.6 138 38.4
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 1.3e-11 73.6 119 42.9
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 1.7e-11 73.2 114 38.6
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 1.7e-11 73.2 103 43.7
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 1.7e-11 73.2 103 43.7
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 7.2e-10 67.8 144 35.4
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 2.1e-09 66.2 124 44.4
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 2.1e-09 66.2 152 38.2
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 6.1e-09 64.7 132 40.2
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.3e-08 63.5 118 37.3
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.3e-08 63.5 127 38.6
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 8.7e-08 60.8 97 46.4
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 8.7e-08 60.8 114 36.0
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 1.9e-07 59.7 119 39.5
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 3.3e-07 58.9 39 69.2
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 4.3e-07 58.5 135 34.1
Lj1g0012048 Lotus japonicus HOM05D021496 ORTHO05D022761 5.7e-07 58.2 109 40.4
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 5.7e-07 58.2 119 36.1
Glyma.06G076800 Glycine max HOM05D021496 ORTHO05D022761 1.6e-06 56.6 108 38.9
Glyma.04G075600 Glycine max HOM05D021496 ORTHO05D022761 2.8e-06 55.8 108 38.0
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 4.8e-06 55.1 41 53.7
Lalb_Chr08g0243531 Lupinus albus HOM05D021496 ORTHO05D022761 8.2e-06 54.3 121 33.1


User provided reference genes

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