Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 0.0e+00 1330.1 675 100.0
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 0.0e+00 1153.3 635 90.9
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 3.6e-299 1031.2 635 80.3
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 1.1e-287 993.0 651 75.7
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 1.3e-283 979.5 691 71.8
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 1.5e-265 919.5 638 70.1
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 2.2e-264 915.6 641 69.0
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 8.4e-264 913.7 645 70.2
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 3.2e-263 911.8 636 70.0
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 1.2e-262 909.8 644 67.9
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 2.7e-262 908.7 634 69.7
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 4.6e-262 907.9 636 70.3
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 6.0e-262 907.5 633 70.6
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 7.9e-262 907.1 636 69.3
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 3.9e-261 904.8 646 68.6
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 8.7e-261 903.7 644 68.0
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 5.7e-260 901.0 632 70.3
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 1.3e-259 899.8 640 68.4
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 3.7e-259 898.3 642 69.5
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 6.3e-259 897.5 634 70.2
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 8.2e-259 897.1 642 69.3
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 1.8e-258 896.0 642 69.3
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 1.2e-257 893.3 636 68.6
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 1.2e-257 893.3 645 67.1
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 1.2e-257 893.3 644 66.9
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.5e-257 892.9 663 66.7
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 2.0e-257 892.5 674 65.9
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 2.0e-257 892.5 652 67.8
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 4.5e-257 891.3 643 69.8
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 5.0e-256 887.9 654 66.7
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 6.5e-256 887.5 642 67.6
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 8.4e-256 887.1 663 66.8
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 9.3e-255 883.6 656 67.1
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 2.1e-254 882.5 635 68.2
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 2.1e-254 882.5 630 68.7
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 6.1e-254 880.9 642 67.8
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 7.9e-254 880.6 656 66.9
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 7.9e-254 880.6 633 68.6
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 3.9e-253 878.2 640 67.3
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 8.7e-253 877.1 642 67.3
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 2.5e-252 875.5 642 67.9
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 5.7e-252 874.4 632 66.6
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 1.6e-251 872.8 641 67.1
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 3.7e-251 871.7 635 68.3
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 1.8e-250 869.4 634 67.8
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 6.9e-250 867.5 648 67.3
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 5.9e-249 864.4 667 65.4
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 7.7e-249 864.0 642 67.4
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 1.3e-248 863.2 637 65.6
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 1.4e-247 859.8 636 67.1
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 5.5e-247 857.8 657 64.7
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 9.4e-247 857.1 644 67.9
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 1.2e-246 856.7 604 68.9
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 1.8e-245 852.8 636 66.7
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 6.7e-245 850.9 547 76.1
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 6.7e-245 850.9 630 67.9
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 1.1e-244 850.1 630 67.8
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 4.3e-244 848.2 644 66.3
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 4.3e-244 848.2 644 66.3
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 3.7e-243 845.1 634 65.3
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 7.2e-239 830.9 627 65.2
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 1.6e-238 829.7 652 64.1
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 7.9e-238 827.4 630 64.1
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 1.0e-237 827.0 639 64.5
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 1.8e-237 826.2 660 63.2
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 2.0e-236 822.8 629 64.9
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 2.6e-236 822.4 639 64.2
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 2.6e-236 822.4 636 64.2
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 9.7e-236 820.5 631 63.7
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 9.7e-236 820.5 651 62.4
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 1.3e-235 820.1 636 63.8
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 8.2e-235 817.4 634 63.7
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 1.1e-234 817.0 631 63.9
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 2.4e-234 815.8 644 63.0
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 3.1e-234 815.5 647 63.5
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 7.0e-234 814.3 636 63.7
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 9.1e-234 813.9 634 64.7
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 2.6e-233 812.4 643 63.9
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 3.5e-233 812.0 639 63.1
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 1.1e-231 807.0 633 65.1
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 7.2e-231 804.3 637 62.6
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 7.7e-225 784.3 582 65.3
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 1.8e-221 773.1 637 61.2
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 3.0e-221 772.3 491 75.8
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 1.5e-220 770.0 630 61.7
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 3.4e-220 768.8 648 60.2
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 7.0e-210 734.6 640 57.2
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 2.5e-207 726.1 594 60.8
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 1.7e-200 703.4 646 55.9
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 7.5e-196 688.0 449 73.1
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 6.4e-179 631.7 617 52.5
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 1.1e-178 630.9 627 52.8
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 5.6e-175 618.6 644 50.8
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 8.1e-166 588.2 503 59.8
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 1.1e-162 577.8 595 51.1
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 1.2e-153 547.7 428 62.6
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 2.5e-151 540.0 359 70.5
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 1.1e-138 498.0 328 71.6
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 2.3e-136 490.3 333 70.6
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 2.6e-132 476.9 468 50.6
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 7.5e-103 379.0 413 49.9
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 3.5e-84 317.0 299 54.5
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 1.2e-71 275.4 189 64.0
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 8.6e-67 259.2 204 66.7
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 8.9e-64 249.2 191 64.9
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 1.1e-56 225.7 190 57.9
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 2.1e-52 211.5 179 60.9
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 1.3e-51 208.8 129 75.2
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 4.6e-44 183.7 135 65.2
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 6.0e-44 183.3 123 73.2
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 5.5e-37 160.2 177 50.8
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 3.3e-34 151.0 106 67.0
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 9.6e-34 149.4 114 67.5
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 5.3e-32 143.7 73 89.0
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 4.1e-24 117.5 77 68.8
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 9.4e-21 106.3 67 73.1


User provided reference genes

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