Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011152 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 5.7e-89 330.9 165 100.0
CSS0022382 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 1.7e-77 292.7 172 87.2
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 1.6e-38 163.3 115 77.4
CSS0040448 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 2.3e-37 159.5 139 64.7
CSS0036155 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 8.6e-37 157.5 160 58.1
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 1.7e-32 143.3 127 61.4
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 6.4e-32 141.4 114 66.7
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 8.4e-32 141.0 127 62.2
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 3.2e-31 139.0 113 63.7
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 3.2e-31 139.0 113 63.7
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 4.2e-31 138.7 114 64.9
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 2.7e-30 136.0 113 62.8
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 3.5e-30 135.6 125 57.6
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 3.5e-30 135.6 125 57.6
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 6.0e-30 134.8 113 61.1
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 6.0e-30 134.8 114 63.2
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 7.8e-30 134.4 114 62.3
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 1.0e-29 134.0 114 61.4
CSS0043147 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D015016 1.3e-29 133.7 164 51.8
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 1.3e-29 133.7 125 56.0
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 1.7e-29 133.3 127 54.3
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 2.3e-29 132.9 125 56.8
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 6.6e-29 131.3 114 60.5
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 8.7e-29 131.0 113 58.4
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 1.5e-28 130.2 140 52.1
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.9e-28 129.8 125 57.6
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 2.5e-28 129.4 112 58.9
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 4.3e-28 128.6 127 53.5
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 5.6e-28 128.3 114 59.6
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 5.6e-28 128.3 114 57.0
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 9.6e-28 127.5 114 58.8
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.3e-27 127.1 114 59.6
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.3e-27 127.1 114 59.6
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.3e-27 127.1 114 57.0
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 1.6e-27 126.7 114 61.4
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 1.6e-27 126.7 114 57.0
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 1.6e-27 126.7 112 56.2
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 1.6e-27 126.7 113 59.3
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 2.1e-27 126.3 125 53.6
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 2.8e-27 125.9 114 59.6
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 2.8e-27 125.9 114 60.5
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 3.6e-27 125.6 152 48.7
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 3.6e-27 125.6 114 58.8
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 4.8e-27 125.2 114 56.1
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 1.4e-26 123.6 111 58.6
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 1.8e-26 123.2 114 56.1
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 2.4e-26 122.9 114 57.9
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 2.4e-26 122.9 114 57.9
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 3.1e-26 122.5 114 54.4
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 4.0e-26 122.1 125 54.4
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 5.3e-26 121.7 114 57.0
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 6.9e-26 121.3 114 57.9
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 9.0e-26 120.9 113 57.5
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 1.5e-25 120.2 124 54.0
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 2.0e-25 119.8 114 57.0
HanXRQChr13g0393551 Helianthus annuus HOM05D002352 ORTHO05D003724 2.0e-25 119.8 113 54.9
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 2.6e-25 119.4 114 55.3
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 3.4e-25 119.0 114 56.1
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 4.5e-25 118.6 114 57.0
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 4.5e-25 118.6 114 54.4
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 5.8e-25 118.2 129 48.8
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 9.9e-25 117.5 129 49.6
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 9.9e-25 117.5 114 54.4
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 9.9e-25 117.5 114 57.0
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.3e-24 117.1 127 54.3
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.7e-24 116.7 114 57.0
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.7e-24 116.7 114 57.0
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.7e-24 116.7 114 57.0
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 2.2e-24 116.3 114 55.3
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 3.8e-24 115.5 125 50.4
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 3.8e-24 115.5 127 51.2
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 3.8e-24 115.5 112 50.9
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 4.9e-24 115.2 111 52.3
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 4.9e-24 115.2 114 57.0
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 4.9e-24 115.2 114 53.5
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 6.4e-24 114.8 114 54.4
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 6.4e-24 114.8 114 53.5
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 8.4e-24 114.4 114 54.4
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 1.1e-23 114.0 124 51.6
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 1.1e-23 114.0 108 52.8
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 1.4e-23 113.6 114 55.3
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 1.4e-23 113.6 114 53.5
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 1.4e-23 113.6 114 52.6
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 1.9e-23 113.2 111 53.2
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 1.9e-23 113.2 113 51.3
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 2.4e-23 112.8 114 54.4
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 5.4e-23 111.7 128 47.7
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 5.4e-23 111.7 108 52.8
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 5.4e-23 111.7 114 53.5
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 5.4e-23 111.7 114 54.4
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 7.1e-23 111.3 108 52.8
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 7.1e-23 111.3 108 52.8
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 7.1e-23 111.3 124 47.6
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 9.3e-23 110.9 108 51.9
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 9.3e-23 110.9 108 51.9
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 9.3e-23 110.9 108 51.9
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 9.3e-23 110.9 139 44.6
SHI23480 Sapria himalayana HOM05D002352 ORTHO05D016619 9.3e-23 110.9 112 52.7
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 1.2e-22 110.5 129 48.8
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 1.6e-22 110.2 108 50.9
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 2.7e-22 109.4 108 50.9
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 2.7e-22 109.4 114 52.6
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 2.7e-22 109.4 108 51.9
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 3.5e-22 109.0 114 54.4
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 4.6e-22 108.6 108 50.9
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 4.6e-22 108.6 108 50.9
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 4.6e-22 108.6 108 50.9
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 6.0e-22 108.2 108 50.9
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 7.9e-22 107.8 108 50.0
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 7.9e-22 107.8 108 50.0
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 7.9e-22 107.8 108 50.0
MD07G1271900 Malus domestica HOM05D002352 ORTHO05D003724 7.9e-22 107.8 118 50.8
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.0e-21 107.5 113 49.6
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 1.3e-21 107.1 114 50.9
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.3e-21 107.1 114 51.8
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 1.8e-21 106.7 108 50.0
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.8e-21 106.7 114 51.8
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 6.7e-21 104.8 108 50.0
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 8.7e-21 104.4 125 45.6
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 1.5e-20 103.6 129 45.7
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 2.5e-20 102.8 124 49.2
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 7.4e-20 101.3 137 44.5
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 7.4e-20 101.3 77 64.9
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 1.3e-19 100.5 132 45.5
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.6e-19 100.1 114 48.2
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 2.8e-19 99.4 129 45.0
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 1.4e-18 97.1 132 44.7
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 2.4e-18 96.3 132 43.9
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 4.0e-18 95.5 108 50.0
HanXRQChr11g0324561 Helianthus annuus HOM05D002352 ORTHO05D015016 1.1e-15 87.4 102 49.0
Zm00001eb214370 Zea mays HOM05D002352 ORTHO05D016619 1.4e-15 87.0 110 46.4
CSS0012113 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.9e-13 79.0 41 90.2
CSS0029081 Camellia sinensis var. sinensis HOM05D005037 ORTHO05D006274 3.9e-13 79.0 41 90.2
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 6.7e-13 78.2 53 71.7
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 1.1e-12 77.4 127 33.9
Hma1.2p1_1294F.1_g273870 Hydrangea macrophylla HOM05D002352 ORTHO05D015016 3.3e-12 75.9 129 41.1
CSS0040212 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D007190 5.6e-12 75.1 45 77.8
Hma1.2p1_1431F.1_g282990 Hydrangea macrophylla HOM05D002352 ORTHO05D015016 5.6e-12 75.1 128 41.4
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 6.2e-11 71.6 84 47.6
TPR.G18787 Trifolium pratense HOM05D002352 ORTHO05D014906 1.4e-10 70.5 50 64.0
MD07G1271400 Malus domestica HOM05D002352 ORTHO05D016619 2.4e-10 69.7 51 62.7
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 2.0e-09 66.6 93 34.4
TPR.G38072 Trifolium pratense HOM05D002352 ORTHO05D014906 1.3e-08 63.9 107 39.3
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 1.7e-08 63.5 78 35.9
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 8.4e-08 61.2 70 37.1
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 8.4e-08 61.2 64 54.7
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 1.4e-07 60.5 112 29.5
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 4.6e-06 55.5 77 31.2


User provided reference genes

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