Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011133 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.2e-115 419.9 206 100.0
CSS0017033 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 9.9e-107 390.2 204 93.1
CSS0039890 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 3.8e-106 388.3 206 94.2
CSS0004377 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 3.4e-99 365.2 200 90.0
CSS0036794 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.4e-92 343.2 189 89.9
CSS0001059 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 7.6e-75 284.3 179 76.0
Dinv22492 Davidia involucrata HOM05D003827 ORTHO05D004518 4.6e-72 275.0 183 72.1
vmacro14883 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 2.5e-70 269.2 185 70.8
vmacro02620 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 4.3e-70 268.5 189 69.8
COL.COLO4_06099 Corchorus olitorius HOM05D003827 ORTHO05D004518 5.3e-68 261.5 197 66.5
Rhsim13G0030000 Rhododendron simsii HOM05D003827 ORTHO05D004518 2.6e-67 259.2 181 70.2
Dinv34555 Davidia involucrata HOM05D003827 ORTHO05D004518 7.7e-67 257.7 183 71.0
Rhsim01G0271400 Rhododendron simsii HOM05D003827 ORTHO05D004518 1.0e-66 257.3 173 71.1
Duzib138G1561 Durio zibethinus HOM05D003827 ORTHO05D004518 5.0e-66 255.0 196 62.2
Thecc.01G269500 Theobroma cacao HOM05D003827 ORTHO05D004518 9.4e-65 250.8 195 63.1
Actinidia24929 Actinidia chinensis HOM05D003827 ORTHO05D004518 1.0e-63 247.3 191 64.4
Manes.05G082700 Manihot esculenta HOM05D003827 ORTHO05D004518 1.0e-63 247.3 195 60.0
Actinidia19972 Actinidia chinensis HOM05D003827 ORTHO05D004518 1.4e-63 246.9 180 67.8
Actinidia21149 Actinidia chinensis HOM05D003827 ORTHO05D004518 1.4e-63 246.9 193 66.3
Duzib211G0278 Durio zibethinus HOM05D003827 ORTHO05D004518 6.7e-63 244.6 195 61.0
Duzib133G0640 Durio zibethinus HOM05D003827 ORTHO05D004518 1.1e-62 243.8 184 64.1
Oeu058798.1 Olea europaea HOM05D003827 ORTHO05D004518 4.4e-62 241.9 180 63.9
Ciclev10018911m.g Citrus clementina HOM05D003827 ORTHO05D004518 2.2e-61 239.6 185 64.3
SalBow6G3195 Salvia bowleyana HOM05D003827 ORTHO05D004518 3.7e-61 238.8 178 64.6
Atru.chr5.1540 Acer truncatum HOM05D003827 ORTHO05D004518 6.3e-61 238.0 179 65.9
QL12p042499 Quercus lobata HOM05D003827 ORTHO05D004518 1.1e-60 237.3 191 64.4
Cpa.g.c31397 Carica papaya HOM05D003827 ORTHO05D004518 1.4e-60 236.9 190 58.9
Nitab4.5_0010556g0020 Nicotiana tabacum HOM05D003827 ORTHO05D004518 9.1e-60 234.2 178 63.5
Lj1A56T63 Lonicera japonica HOM05D003827 ORTHO05D004518 2.0e-59 233.0 184 63.6
Haze_04629 Corylus avellana HOM05D003827 ORTHO05D004518 2.6e-59 232.6 190 62.1
Solyc07g008670.3 Solanum lycopersicum HOM05D003827 ORTHO05D004518 2.6e-59 232.6 191 60.7
MSTRG.18275 Avicennia marina HOM05D003827 ORTHO05D004518 3.4e-59 232.3 176 65.3
Manes.01G203100 Manihot esculenta HOM05D003827 ORTHO05D004518 5.9e-59 231.5 193 59.6
Nn1g02509 Nelumbo nucifera HOM05D003827 ORTHO05D004518 5.9e-59 231.5 183 62.8
Sopen07g004600 Solanum pennellii HOM05D003827 ORTHO05D004518 5.9e-59 231.5 191 60.2
MSTRG.12545 Avicennia marina HOM05D003827 ORTHO05D004518 1.0e-58 230.7 176 64.8
Sabra02G0037600 Salix brachista HOM05D003827 ORTHO05D004518 1.3e-58 230.3 184 60.9
Gorai.001G241900 Gossypium raimondii HOM05D003827 ORTHO05D004518 1.7e-58 229.9 191 60.7
Potri.002G046700 Populus trichocarpa HOM05D003827 ORTHO05D004518 1.7e-58 229.9 181 62.4
TAR362G1025 Trochodendron aralioides HOM05D003827 ORTHO05D004518 1.7e-58 229.9 182 61.0
Gohir.D07G213901 Gossypium hirsutum HOM05D003827 ORTHO05D004518 2.2e-58 229.6 190 61.6
PGSC0003DMG400022986 Solanum tuberosum HOM05D003827 ORTHO05D004518 8.5e-58 227.6 191 59.7
RcHm_v2.0_Chr6g0289731 Rosa chinensis HOM05D003827 ORTHO05D004518 1.1e-57 227.3 191 61.8
Gohir.A07G207900 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.9e-57 226.5 190 61.1
Cfa006213 Carpinus fangiana HOM05D003827 ORTHO05D004518 3.2e-57 225.7 179 63.1
Nitab4.5_0000617g0200 Nicotiana tabacum HOM05D003827 ORTHO05D004518 3.2e-57 225.7 177 62.1
Gorai.004G075700 Gossypium raimondii HOM05D003827 ORTHO05D004518 1.8e-55 219.9 197 57.9
Gohir.D11G131801 Gossypium hirsutum HOM05D003827 ORTHO05D004518 3.0e-55 219.2 195 55.4
Gorai.007G140900 Gossypium raimondii HOM05D003827 ORTHO05D004518 3.0e-55 219.2 195 55.4
Gohir.A11G126200 Gossypium hirsutum HOM05D003827 ORTHO05D004518 3.9e-55 218.8 195 55.4
Potri.005G216300 Populus trichocarpa HOM05D003827 ORTHO05D004518 3.9e-55 218.8 188 60.1
Eucgr.B01477 Eucalyptus grandis HOM05D003827 ORTHO05D004518 6.7e-55 218.0 194 58.2
Migut.D00347 Erythranthe guttata HOM05D003827 ORTHO05D004518 8.8e-55 217.6 199 56.3
Peaxi162Scf01038g00148 Petunia axillaris HOM05D003827 ORTHO05D004518 8.8e-55 217.6 177 59.3
CiPaw.07G086100 Carya illinoinensis HOM05D003827 ORTHO05D004518 1.5e-54 216.9 191 58.1
Sabra05G0165800 Salix brachista HOM05D003827 ORTHO05D004518 2.6e-54 216.1 186 58.1
MSTRG.21519 Avicennia marina HOM05D003827 ORTHO05D004518 9.7e-54 214.2 188 57.4
Gohir.A08G062500 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.3e-53 213.8 197 55.3
Prupe.8G233400 Prunus persica HOM05D003827 ORTHO05D004518 1.3e-53 213.8 176 59.7
TAR633G0743 Trochodendron aralioides HOM05D003827 ORTHO05D004518 2.2e-53 213.0 186 56.5
MSTRG.17468 Avicennia marina HOM05D003827 ORTHO05D004518 8.2e-53 211.1 192 57.8
MD03G1256300 Malus domestica HOM05D003827 ORTHO05D004518 1.1e-52 210.7 176 60.8
Gohir.D08G071700 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.4e-52 210.3 197 55.3
FAN20G2722 Fragaria x ananassa HOM05D003827 ORTHO05D004518 1.2e-51 207.2 176 61.4
PGR119G2143 Punica granatum HOM05D003827 ORTHO05D004518 1.6e-51 206.8 178 60.1
FAN15G1200 Fragaria x ananassa HOM05D003827 ORTHO05D004518 2.6e-51 206.1 176 60.2
MD11G1277100 Malus domestica HOM05D003827 ORTHO05D004518 2.6e-51 206.1 173 60.1
Cc00_g27210 Coffea canephora HOM05D003827 ORTHO05D004518 3.5e-51 205.7 190 57.9
Aqoxy5G00378 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 1.0e-50 204.1 194 55.7
FAN24G2611 Fragaria x ananassa HOM05D003827 ORTHO05D004518 1.3e-50 203.8 175 59.4
EL10Ac5g10483 Beta vulgaris HOM05D003827 ORTHO05D004518 1.7e-50 203.4 181 56.9
AUR62011961 Chenopodium quinoa HOM05D003827 ORTHO05D004518 3.8e-50 202.2 181 56.9
AUR62032274 Chenopodium quinoa HOM05D003827 ORTHO05D004518 3.8e-50 202.2 181 56.9
FAN27G1464 Fragaria x ananassa HOM05D003827 ORTHO05D004518 8.5e-50 201.1 176 59.1
CANSAT25G1147 Cannabis sativa HOM05D003827 ORTHO05D004518 1.9e-49 199.9 178 54.5
Ah.11g050100 Amaranthus hybridus HOM05D003827 ORTHO05D004518 1.6e-48 196.8 195 52.8
SalBow4G1883 Salvia bowleyana HOM05D003827 ORTHO05D004518 2.1e-48 196.4 184 56.0
SalBow4G1898 Salvia bowleyana HOM05D003827 ORTHO05D004518 2.1e-48 196.4 184 56.0
ClCG07G000540 Citrullus lanatus HOM05D003827 ORTHO05D004518 2.7e-48 196.1 186 55.4
Ah.02g111340 Amaranthus hybridus HOM05D003827 ORTHO05D004518 6.1e-48 194.9 180 53.9
DCAR_012508 Daucus carota HOM05D003827 ORTHO05D004518 1.0e-47 194.1 180 55.0
Sed0018560 Sechium edule HOM05D003827 ORTHO05D004518 1.0e-47 194.1 199 51.8
MELO3C014319.2 Cucumis melo HOM05D003827 ORTHO05D004518 5.2e-47 191.8 186 53.2
CsaV3_2G013800 Cucumis sativus L. HOM05D003827 ORTHO05D004518 6.7e-47 191.4 186 52.7
Lsat_1_v5_gn_5_184780 Lactuca sativa HOM05D003827 ORTHO05D004518 1.2e-46 190.7 195 56.4
TPR.G19092 Trifolium pratense HOM05D003827 ORTHO05D004518 2.0e-46 189.9 192 52.6
Medtr1g071070 Medicago truncatula HOM05D003827 ORTHO05D004518 3.3e-46 189.1 192 51.0
Ca_08637_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 5.7e-46 188.3 192 52.6
Psat3g061520 Pisum sativum HOM05D003827 ORTHO05D004518 7.5e-46 188.0 193 52.8
Lalb_Chr06g0162731 Lupinus albus HOM05D003827 ORTHO05D004518 2.2e-45 186.4 196 48.0
Medtr7g095890 Medicago truncatula HOM05D003827 ORTHO05D004518 2.2e-45 186.4 190 52.6
Phvul.007G175800 Phaseolus vulgaris HOM05D003827 ORTHO05D004518 2.2e-45 186.4 199 50.3
Glyma.10G031000 Glycine max HOM05D003827 ORTHO05D004518 3.7e-45 185.7 185 52.4
Migut.N02178 Erythranthe guttata HOM05D003827 ORTHO05D004518 6.3e-45 184.9 185 54.6
PSO210G6408 Papaver somniferum HOM05D003827 ORTHO05D004518 6.3e-45 184.9 187 52.4
PSO832G0360 Papaver somniferum HOM05D003827 ORTHO05D004518 6.3e-45 184.9 187 52.4
Psat6g058320 Pisum sativum HOM05D003827 ORTHO05D004518 7.0e-44 181.4 197 48.7
VMungo0720G1763 Vigna mungo HOM05D003827 ORTHO05D004518 9.1e-44 181.0 199 48.7
Glyma.02G143400 Glycine max HOM05D003827 ORTHO05D004518 1.6e-43 180.3 184 51.6
DCAR_005854 Daucus carota HOM05D003827 ORTHO05D004518 3.5e-43 179.1 172 50.6
SGA_v2.0_scaffold81G26054 Striga asiatica HOM05D003827 ORTHO05D004518 4.5e-43 178.7 197 52.3
Ca_09721_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 5.9e-43 178.3 199 48.2
MBI04_g36520_MAGBIO Magnolia biondii HOM05D003827 ORTHO05D004518 7.7e-43 177.9 188 53.7
TPR.G39105 Trifolium pratense HOM05D003827 ORTHO05D004518 5.0e-42 175.3 200 48.0
DCAR_002692 Daucus carota HOM05D003827 ORTHO05D004518 2.5e-41 172.9 173 49.7
Lj1g0025199 Lotus japonicus HOM05D003827 ORTHO05D004518 3.2e-41 172.6 195 48.7
Hund02868 Selenicereus undatus HOM05D003827 ORTHO05D004518 5.5e-41 171.8 164 54.3
HanXRQChr01g0006931 Helianthus annuus HOM05D003827 ORTHO05D004518 7.2e-41 171.4 185 51.4
arahy.Tifrunner.gnm1.ann1.X14VTN Arachis hypogaea HOM05D003827 ORTHO05D004518 1.2e-40 170.6 200 45.5
Sc05g0001120 Simmondsia chinensis HOM05D003827 ORTHO05D004518 1.2e-40 170.6 181 51.4
arahy.Tifrunner.gnm1.ann1.S69P4W Arachis hypogaea HOM05D003827 ORTHO05D004518 1.6e-40 170.2 202 45.0
arahy.Tifrunner.gnm1.ann1.735JS3 Arachis hypogaea HOM05D003827 ORTHO05D004518 2.1e-40 169.9 182 47.3
arahy.Tifrunner.gnm1.ann1.900HG3 Arachis hypogaea HOM05D003827 ORTHO05D004518 6.1e-40 168.3 182 48.4
Aqoxy2G03489 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 1.4e-39 167.2 188 44.7
HanXRQChr06g0177881 Helianthus annuus HOM05D003827 ORTHO05D004518 1.8e-39 166.8 178 52.8
Lj5g0023922 Lotus japonicus HOM05D003827 ORTHO05D004518 3.0e-39 166.0 193 45.1
Lalb_Chr01g0019961 Lupinus albus HOM05D003827 ORTHO05D004518 1.4e-36 157.1 177 44.6
Lsat_1_v5_gn_9_7940 Lactuca sativa HOM05D003827 ORTHO05D004518 3.5e-35 152.5 183 49.7
ECA248G3364 Erigeron canadensis HOM05D003827 ORTHO05D004518 1.3e-34 150.6 181 46.4
AL5G46290 Arabidopsis lyrata HOM05D003827 ORTHO05D004518 2.9e-34 149.4 171 49.1
Aa31LG10G17280 Aethionema arabicum HOM05D003827 ORTHO05D004518 5.0e-34 148.7 194 43.3
Thhalv10005863m.g Eutrema salsugineum HOM05D003827 ORTHO05D004518 3.3e-33 146.0 171 47.4
HanXRQChr15g0466901 Helianthus annuus HOM05D003827 ORTHO05D004518 7.2e-33 144.8 187 43.3
Sp5g00120 Schrenkiella parvula HOM05D003827 ORTHO05D004518 4.7e-32 142.1 192 44.8
Carub.0005s3005 Capsella rubella HOM05D003827 ORTHO05D004518 8.0e-32 141.4 190 43.2
AT3G63430 Arabidopsis thaliana HOM05D003827 ORTHO05D004518 2.3e-31 139.8 170 47.1
QL11p007191 Quercus lobata HOM05D000005 ORTHO05D000012 4.0e-31 139.0 132 53.8
CDE07G1346 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 5.2e-31 138.7 189 40.7
SHI10022 Sapria himalayana HOM05D003827 ORTHO05D004518 2.0e-30 136.7 172 43.6
CARHR291540 Cardamine hirsuta HOM05D003827 ORTHO05D004518 9.8e-30 134.4 170 45.9
CDE06G2016 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 3.7e-29 132.5 190 39.5
ECA247G1386 Erigeron canadensis HOM05D003827 ORTHO05D004518 8.3e-29 131.3 191 46.6
THA.LOC104817570 Tarenaya hassleriana HOM05D003827 ORTHO05D004518 2.3e-26 123.2 176 40.3
GSVIVG01003137001 Vitis vinifera HOM05D003827 ORTHO05D004518 3.8e-26 122.5 97 56.7
Nn3g21249 Nelumbo nucifera HOM05D003827 ORTHO05D004518 2.6e-22 109.8 108 49.1
BolC8t51378H Brassica oleracea HOM05D003827 ORTHO05D004518 7.0e-20 101.7 173 42.2
C08p38040 Brassica napus HOM05D003827 ORTHO05D004518 9.2e-20 101.3 173 42.2
BcaC07g40810 Brassica carinata HOM05D003827 ORTHO05D004518 1.2e-19 100.9 173 42.2
BcaC07g42691 Brassica carinata HOM05D003827 ORTHO05D004518 1.2e-19 100.9 159 45.3
A09p55100 Brassica napus HOM05D003827 ORTHO05D004518 3.5e-19 99.4 172 41.9
BraA09t40917Z Brassica rapa HOM05D003827 ORTHO05D004518 1.0e-18 97.8 172 41.3
HPP92_020343 Vanilla planifolia HOM05D003827 ORTHO05D004518 5.8e-14 82.0 174 31.0
HPP92_024347 Vanilla planifolia HOM05D003827 ORTHO05D004518 1.9e-12 77.0 190 32.6
SGA_v2.0_scaffold28G11742 Striga asiatica HOM05D001693 ORTHO05D001588 7.3e-09 65.1 202 33.2
SEGI_17249 Sequoiadendron giganteum HOM05D001693 ORTHO05D001588 1.6e-08 63.9 182 32.4
QL02p067404 Quercus lobata HOM05D001693 ORTHO05D001588 3.6e-08 62.8 208 29.8
SEGI_41162 Sequoiadendron giganteum HOM05D001693 ORTHO05D001588 3.6e-08 62.8 201 29.4
C09p61530 Brassica napus HOM05D001693 ORTHO05D001588 6.2e-08 62.0 206 30.6
BolC9t58992H Brassica oleracea HOM05D001693 ORTHO05D001588 6.2e-08 62.0 206 30.6
Cpa.g.sc14.190 Carica papaya HOM05D001693 ORTHO05D001588 6.2e-08 62.0 210 30.5
Lj4C120T11 Lonicera japonica HOM05D001693 ORTHO05D001588 6.2e-08 62.0 198 27.3
SalBow1G3500 Salvia bowleyana HOM05D001693 ORTHO05D001588 2.3e-07 60.1 204 28.4
SalBow1G8326 Salvia bowleyana HOM05D001693 ORTHO05D001588 2.3e-07 60.1 170 32.9
Zm00001eb200650 Zea mays HOM05D003827 ORTHO05D004518 3.1e-07 59.7 176 27.3
ECA232G0439 Erigeron canadensis HOM05D001693 ORTHO05D001588 4.0e-07 59.3 214 30.8
Hma1.2p1_0029F.1_g018050 Hydrangea macrophylla HOM05D001693 ORTHO05D001588 4.0e-07 59.3 196 30.6
MELO3C002039.2 Cucumis melo HOM05D001693 ORTHO05D001588 5.2e-07 58.9 215 30.2
MBI19_g13319_MAGBIO Magnolia biondii HOM05D001693 ORTHO05D001588 5.2e-07 58.9 219 29.7
BcaC03g18556 Brassica carinata HOM05D001693 ORTHO05D001588 2.6e-06 56.6 201 30.8
ClCG04G011700 Citrullus lanatus HOM05D001693 ORTHO05D001588 2.6e-06 56.6 214 29.4
Pp3c5_7380 Physcomitrium patens HOM05D042831 ORTHO05D001588 5.8e-06 55.5 197 26.4
SalBow5G2804 Salvia bowleyana HOM05D001693 ORTHO05D001588 5.8e-06 55.5 181 33.7
HanXRQChr16g0522171 Helianthus annuus HOM05D001693 ORTHO05D001588 7.5e-06 55.1 196 30.6
Oeu002272.1 Olea europaea HOM05D003827 ORTHO05D004518 7.5e-06 55.1 178 29.2
CsaV3_1G003000 Cucumis sativus L. HOM05D001693 ORTHO05D001588 9.9e-06 54.7 194 29.4


User provided reference genes

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