Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011097 Camellia sinensis var. sinensis HOM05D007325 ORTHO05D009251 3.2e-52 208.4 123 100.0
Dinv24533 Davidia involucrata HOM05D003267 ORTHO05D003955 1.3e-24 116.7 104 63.5
Dinv30961 Davidia involucrata HOM05D007325 ORTHO05D009251 1.6e-24 116.3 110 66.4
Cc02_g36910 Coffea canephora HOM05D007325 ORTHO05D009251 3.8e-21 105.1 89 65.2
Sopen01g044880 Solanum pennellii HOM05D007325 ORTHO05D009251 6.5e-21 104.4 89 70.8
PGSC0003DMG400018232 Solanum tuberosum HOM05D007325 ORTHO05D009251 2.5e-20 102.4 88 62.5
Lj5P313T22 Lonicera japonica HOM05D007325 ORTHO05D009251 5.1e-18 94.7 87 62.1
MD12G1197000 Malus domestica HOM05D007325 ORTHO05D009251 2.2e-16 89.4 88 59.1
Prupe.6G302100 Prunus persica HOM05D007325 ORTHO05D009251 1.1e-15 87.0 88 58.0
Oeu061920.1 Olea europaea HOM05D007325 ORTHO05D009251 2.4e-15 85.9 115 47.8
Manes.08G105900 Manihot esculenta HOM05D007325 ORTHO05D009251 4.1e-15 85.1 110 50.9
Lj9P239T47 Lonicera japonica HOM05D007325 ORTHO05D009251 5.3e-15 84.7 75 64.0
HanXRQChr04g0108581 Helianthus annuus HOM05D007325 ORTHO05D009251 6.9e-15 84.3 100 56.0
SalBow6G6911 Salvia bowleyana HOM05D007325 ORTHO05D009251 9.1e-15 84.0 112 51.8
arahy.Tifrunner.gnm1.ann1.Y42B53 Arachis hypogaea HOM05D007325 ORTHO05D009251 2.0e-14 82.8 100 49.0
Manes.09G182800 Manihot esculenta HOM05D007325 ORTHO05D009251 3.4e-14 82.0 115 46.1
Phvul.001G220700 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 5.9e-14 81.3 124 47.6
Potri.005G000700 Populus trichocarpa HOM05D007325 ORTHO05D009251 5.9e-14 81.3 82 58.5
MD04G1183600 Malus domestica HOM05D007325 ORTHO05D009251 1.0e-13 80.5 88 56.8
Cfa004401 Carpinus fangiana HOM05D008494 ORTHO05D010021 1.3e-13 80.1 116 53.4
VMungo1383G0662 Vigna mungo HOM05D007325 ORTHO05D009251 2.2e-13 79.3 123 48.0
Psat6g156800 Pisum sativum HOM05D007325 ORTHO05D009251 8.5e-13 77.4 97 51.5
Thecc.05G331600 Theobroma cacao HOM05D007325 ORTHO05D009251 1.1e-12 77.0 88 53.4
Glyma.03G226900 Glycine max HOM05D007325 ORTHO05D009251 1.4e-12 76.6 111 46.8
Lalb_Chr06g0167201 Lupinus albus HOM05D007325 ORTHO05D009251 1.4e-12 76.6 47 80.9
CANSAT54G2629 Cannabis sativa HOM05D007325 ORTHO05D009251 1.9e-12 76.3 74 58.1
Lsat_1_v5_gn_9_83741 Lactuca sativa HOM05D007325 ORTHO05D009251 2.5e-12 75.9 95 44.2
Lalb_Chr02g0147341 Lupinus albus HOM05D007325 ORTHO05D009251 3.2e-12 75.5 111 47.7
Atru.chr12.1499 Acer truncatum HOM05D007325 ORTHO05D009251 4.2e-12 75.1 70 57.1
Gohir.D13G117300 Gossypium hirsutum HOM05D007325 ORTHO05D009251 5.5e-12 74.7 70 57.1
Gohir.A13G114400 Gossypium hirsutum HOM05D007325 ORTHO05D009251 7.2e-12 74.3 70 57.1
TPR.G3077 Trifolium pratense HOM05D007325 ORTHO05D009251 2.1e-11 72.8 98 50.0
Potri.005G000401 Populus trichocarpa HOM05D007325 ORTHO05D009251 2.7e-11 72.4 63 71.4
QL03p011419 Quercus lobata HOM05D007325 ORTHO05D009251 2.7e-11 72.4 47 76.6
RcHm_v2.0_Chr3g0459051 Rosa chinensis HOM05D007325 ORTHO05D009251 2.7e-11 72.4 85 52.9
Lj1g0016832 Lotus japonicus HOM05D007325 ORTHO05D009251 3.6e-11 72.0 96 46.9
Carub.0003s0533 Capsella rubella HOM05D007325 ORTHO05D009251 4.7e-11 71.6 85 63.5
Ciclev10030031m.g Citrus clementina HOM05D007325 ORTHO05D009251 6.1e-11 71.2 70 55.7
FAN09G1210 Fragaria x ananassa HOM05D007325 ORTHO05D009251 6.1e-11 71.2 85 56.5
Gorai.013G131900 Gossypium raimondii HOM05D007325 ORTHO05D009251 6.1e-11 71.2 70 55.7
Eucgr.H01350 Eucalyptus grandis HOM05D007325 ORTHO05D009251 7.9e-11 70.9 93 52.7
Lalb_Chr21g0309941 Lupinus albus HOM05D007325 ORTHO05D009251 7.9e-11 70.9 103 43.7
Medtr1g085240 Medicago truncatula HOM05D007325 ORTHO05D009251 7.9e-11 70.9 86 48.8
Migut.B00680 Erythranthe guttata HOM05D007325 ORTHO05D009251 1.0e-10 70.5 82 50.0
Lj5g0004840 Lotus japonicus HOM05D007325 ORTHO05D009251 1.4e-10 70.1 89 50.6
A05p42120 Brassica napus HOM05D007325 ORTHO05D009251 1.8e-10 69.7 90 58.9
BraA05t22930Z Brassica rapa HOM05D007325 ORTHO05D009251 1.8e-10 69.7 90 58.9
Glyma.20G089800 Glycine max HOM05D007325 ORTHO05D009251 1.8e-10 69.7 123 47.2
FvH4_6g08790 Fragaria vesca HOM05D007325 ORTHO05D009251 3.0e-10 68.9 85 60.0
Aa31LG11G10030 Aethionema arabicum HOM05D007325 ORTHO05D009251 3.9e-10 68.6 102 55.9
Thhalv10022316m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 3.9e-10 68.6 85 51.8
PGR119G2017 Punica granatum HOM05D007325 ORTHO05D009251 3.9e-10 68.6 100 45.0
BcaB04g19232 Brassica carinata HOM05D007325 ORTHO05D009251 5.1e-10 68.2 85 62.4
TAR365G0322 Trochodendron aralioides HOM05D007325 ORTHO05D009251 5.1e-10 68.2 70 68.6
Glyma.10G141100 Glycine max HOM05D007325 ORTHO05D009251 6.7e-10 67.8 76 59.2
Sp3g04850 Schrenkiella parvula HOM05D007325 ORTHO05D009251 6.7e-10 67.8 85 51.8
AL3G16720 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 8.8e-10 67.4 102 54.9
BcaC05g30077 Brassica carinata HOM05D007325 ORTHO05D009251 8.8e-10 67.4 102 53.9
C05p61330 Brassica napus HOM05D007325 ORTHO05D009251 8.8e-10 67.4 102 53.9
BolC5t34792H Brassica oleracea HOM05D007325 ORTHO05D009251 8.8e-10 67.4 102 53.9
FAN02G3982 Fragaria x ananassa HOM05D007325 ORTHO05D009251 8.8e-10 67.4 85 58.8
FAN05G0265 Fragaria x ananassa HOM05D007325 ORTHO05D009251 8.8e-10 67.4 85 58.8
FAN05G4266 Fragaria x ananassa HOM05D007325 ORTHO05D009251 8.8e-10 67.4 85 58.8
BraA03t12615Z Brassica rapa HOM05D007325 ORTHO05D009251 1.1e-09 67.0 102 53.9
CARHR080420 Cardamine hirsuta HOM05D007325 ORTHO05D009251 1.1e-09 67.0 85 61.2
Lalb_Chr04g0260261 Lupinus albus HOM05D007325 ORTHO05D009251 1.5e-09 66.6 87 49.4
Glyma.19G223800 Glycine max HOM05D007325 ORTHO05D009251 2.0e-09 66.2 111 46.8
MBI18_g28938_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 2.0e-09 66.2 86 59.3
Medtr7g111170 Medicago truncatula HOM05D007325 ORTHO05D009251 2.0e-09 66.2 95 48.4
ATR0693G152 Amborella trichopoda HOM05D007325 ORTHO05D009251 4.4e-09 65.1 55 60.0
Aa31LG5G16370 Aethionema arabicum HOM05D007325 ORTHO05D009251 5.7e-09 64.7 90 57.8
THA.LOC104822290 Tarenaya hassleriana HOM05D007325 ORTHO05D009251 5.7e-09 64.7 72 48.6
Thhalv10005170m.g Eutrema salsugineum HOM05D007325 ORTHO05D009251 7.4e-09 64.3 68 66.2
PGR031G0924 Punica granatum HOM05D007325 ORTHO05D009251 7.4e-09 64.3 64 53.1
Medtr7g111180 Medicago truncatula HOM05D007325 ORTHO05D009251 1.3e-08 63.5 71 54.9
BcaC01g04310 Brassica carinata HOM05D007325 ORTHO05D009251 1.7e-08 63.2 85 49.4
C03p41860 Brassica napus HOM05D007325 ORTHO05D009251 1.7e-08 63.2 85 49.4
BolC3t16469H Brassica oleracea HOM05D007325 ORTHO05D009251 1.7e-08 63.2 85 49.4
Phvul.007G207000 Phaseolus vulgaris HOM05D007325 ORTHO05D009251 1.7e-08 63.2 63 55.6
VMungo0720G0176 Vigna mungo HOM05D003267 ORTHO05D003955 1.7e-08 63.2 47 68.1
FAN14G5110 Fragaria x ananassa HOM05D007325 ORTHO05D009251 2.8e-08 62.4 44 70.5
Eucgr.B01357 Eucalyptus grandis HOM05D007325 ORTHO05D009251 3.7e-08 62.0 42 76.2
AT5G26731 Arabidopsis thaliana HOM05D007325 ORTHO05D009251 4.8e-08 61.6 74 64.9
Carub.0006s2420 Capsella rubella HOM05D007325 ORTHO05D009251 4.8e-08 61.6 73 50.7
TAR365G1009 Trochodendron aralioides HOM05D007325 ORTHO05D009251 4.8e-08 61.6 74 47.3
TPR.G8391 Trifolium pratense HOM05D007325 ORTHO05D009251 6.3e-08 61.2 98 49.0
arahy.Tifrunner.gnm1.ann1.GPC6YY Arachis hypogaea HOM05D007325 ORTHO05D009251 8.2e-08 60.8 44 70.5
SGA_v2.0_scaffold131G34452 Striga asiatica HOM05D007325 ORTHO05D009251 1.1e-07 60.5 77 46.8
MBI18_g03881_MAGBIO Magnolia biondii HOM05D007325 ORTHO05D009251 1.4e-07 60.1 55 69.1
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 1.8e-07 59.7 43 69.8
Sp2g21390 Schrenkiella parvula HOM05D007325 ORTHO05D009251 1.8e-07 59.7 67 64.2
TWI14G0425 Tripterygium wilfordii HOM05D007325 ORTHO05D009251 2.4e-07 59.3 77 53.2
Psat0s4029g0040 Pisum sativum HOM05D007325 ORTHO05D009251 3.1e-07 58.9 68 55.9
AL6G38400 Arabidopsis lyrata HOM05D007325 ORTHO05D009251 1.2e-06 57.0 74 62.2
Lalb_Chr15g0077801 Lupinus albus HOM05D007325 ORTHO05D009251 1.2e-06 57.0 47 59.6
A03p34390 Brassica napus HOM05D007325 ORTHO05D009251 1.5e-06 56.6 102 48.0
A06p36820 Brassica napus HOM05D007325 ORTHO05D009251 2.0e-06 56.2 68 61.8
C07p41670 Brassica napus HOM05D007325 ORTHO05D009251 2.0e-06 56.2 68 61.8
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 2.6e-06 55.8 43 65.1
Sed0022272 Sechium edule HOM05D007325 ORTHO05D009251 2.6e-06 55.8 70 44.3
BraA06t26608Z Brassica rapa HOM05D007325 ORTHO05D009251 4.5e-06 55.1 68 60.3
Oeu006910.1 Olea europaea HOM05D007325 ORTHO05D009251 7.7e-06 54.3 79 43.0


User provided reference genes

Program Settings