Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011091 Camellia sinensis var. sinensis HOM05D004686 ORTHO05D005988 7.9e-58 226.9 112 100.0
MD04G1028700 Malus domestica HOM05D004686 ORTHO05D005988 4.2e-11 71.6 40 85.0
Zm00001eb346110 Zea mays HOM05D004686 ORTHO05D005988 4.2e-11 71.6 40 85.0
Ciclev10032367m.g Citrus clementina HOM05D004686 ORTHO05D005988 1.6e-10 69.7 40 82.5
Os05g0155300 Oryza sativa ssp. japonica HOM05D004686 ORTHO05D005988 2.1e-10 69.3 33 97.0
FvH4_1g23510 Fragaria vesca HOM05D004686 ORTHO05D005988 2.7e-10 68.9 33 93.9
FAN19G3154 Fragaria x ananassa HOM05D004686 ORTHO05D005988 2.7e-10 68.9 33 93.9
FAN26G2913 Fragaria x ananassa HOM05D004686 ORTHO05D005988 2.7e-10 68.9 33 93.9
FAN28G2368 Fragaria x ananassa HOM05D004686 ORTHO05D005988 2.7e-10 68.9 33 93.9
Prupe.2G079800 Prunus persica HOM05D004686 ORTHO05D005988 2.7e-10 68.9 33 93.9
RcHm_v2.0_Chr2g0118911 Rosa chinensis HOM05D004686 ORTHO05D005988 4.7e-10 68.2 33 93.9
Actinidia34718 Actinidia chinensis HOM05D004686 ORTHO05D005988 8.0e-10 67.4 33 93.9
ATR0820G097 Amborella trichopoda HOM05D004686 ORTHO05D005988 8.0e-10 67.4 33 93.9
Aqoxy2G01234 Aquilegia oxysepala HOM05D004686 ORTHO05D005988 8.0e-10 67.4 33 93.9
Aqoxy3G00701 Aquilegia oxysepala HOM05D004686 ORTHO05D005988 8.0e-10 67.4 33 93.9
arahy.Tifrunner.gnm1.ann1.0744GE Arachis hypogaea HOM05D000145 ORTHO05D000115 8.0e-10 67.4 33 93.9
arahy.Tifrunner.gnm1.ann1.GZ7TSK Arachis hypogaea HOM05D004686 ORTHO05D005988 8.0e-10 67.4 33 93.9
arahy.Tifrunner.gnm1.ann1.R2EQ4U Arachis hypogaea HOM05D004686 ORTHO05D005988 8.0e-10 67.4 33 93.9
arahy.Tifrunner.gnm1.ann1.XFSN2Q Arachis hypogaea HOM05D004686 ORTHO05D005988 8.0e-10 67.4 33 93.9
arahy.Tifrunner.gnm1.ann1.Z3LWFH Arachis hypogaea HOM05D000145 ORTHO05D000115 8.0e-10 67.4 33 93.9
CAN.G730.34 Capsicum annuum HOM05D004686 ORTHO05D005988 8.0e-10 67.4 33 93.9
Cfa007809 Carpinus fangiana HOM05D004686 ORTHO05D005988 8.0e-10 67.4 33 93.9
Haze_14265 Corylus avellana HOM05D004686 ORTHO05D005988 8.0e-10 67.4 33 93.9
Dinv02032 Davidia involucrata HOM05D004686 ORTHO05D005988 8.0e-10 67.4 33 93.9
Dinv09596 Davidia involucrata HOM05D004686 ORTHO05D005988 8.0e-10 67.4 33 93.9
Dinv11852 Davidia involucrata HOM05D004686 ORTHO05D005988 8.0e-10 67.4 33 93.9
Gohir.D05G288800 Gossypium hirsutum HOM05D004686 ORTHO05D005988 8.0e-10 67.4 33 93.9
Gorai.009G303900 Gossypium raimondii HOM05D004686 ORTHO05D005988 8.0e-10 67.4 33 93.9
Rhsim03G0100800 Rhododendron simsii HOM05D004686 ORTHO05D005988 8.0e-10 67.4 33 93.9
THA.LOC104817910 Tarenaya hassleriana HOM05D004686 ORTHO05D005988 8.0e-10 67.4 33 93.9
TAR633G2407 Trochodendron aralioides HOM05D004686 ORTHO05D005988 8.0e-10 67.4 33 93.9
HPP92_001974 Vanilla planifolia HOM05D004686 ORTHO05D005988 8.0e-10 67.4 40 80.0
GSVIVG01011272001 Vitis vinifera HOM05D004686 ORTHO05D005988 8.0e-10 67.4 33 93.9
Atru.chr12.1003 Acer truncatum HOM05D004686 ORTHO05D005988 1.4e-09 66.6 33 93.9
AUR62038365 Chenopodium quinoa HOM05D004686 ORTHO05D005988 1.4e-09 66.6 33 93.9
Lj5g0008296 Lotus japonicus HOM05D004686 ORTHO05D005988 1.4e-09 66.6 33 93.9
PGR142G2157 Punica granatum HOM05D004686 ORTHO05D005988 1.4e-09 66.6 33 93.9
PGSC0003DMG400019464 Solanum tuberosum HOM05D004686 ORTHO05D005988 1.4e-09 66.6 33 93.9
TWI63G0038 Tripterygium wilfordii HOM05D004686 ORTHO05D005988 1.4e-09 66.6 32 96.9
arahy.Tifrunner.gnm1.ann1.N4KLNP Arachis hypogaea HOM05D004686 ORTHO05D005988 1.8e-09 66.2 33 93.9
CSS0027430 Camellia sinensis var. sinensis HOM05D004686 ORTHO05D005988 1.8e-09 66.2 33 93.9
Duzib128G0508 Durio zibethinus HOM05D004686 ORTHO05D005988 1.8e-09 66.2 33 90.9
ECA238G0678 Erigeron canadensis HOM05D004686 ORTHO05D005988 1.8e-09 66.2 33 93.9
Lsat_1_v5_gn_2_104981 Lactuca sativa HOM05D004686 ORTHO05D005988 1.8e-09 66.2 33 93.9
Peaxi162Scf00173g00068 Petunia axillaris HOM05D004686 ORTHO05D005988 1.8e-09 66.2 32 93.8
Migut.F01616 Erythranthe guttata HOM05D004686 ORTHO05D005988 2.3e-09 65.9 33 90.9
Sabra08G0014900 Salix brachista HOM05D004686 ORTHO05D005988 2.3e-09 65.9 32 96.9
AagrBONN_evm.TU.Sc2ySwM_117.3974 Anthoceros agrestis HOM05D004686 ORTHO05D005988 3.0e-09 65.5 32 93.8
AagrBONN_evm.TU.Sc2ySwM_362.2258 Anthoceros agrestis HOM05D004686 ORTHO05D005988 3.0e-09 65.5 69 55.1
AUR62037089 Chenopodium quinoa HOM05D004686 ORTHO05D005988 3.0e-09 65.5 33 90.9
PSO339G5017 Papaver somniferum HOM05D004686 ORTHO05D005988 3.0e-09 65.5 33 90.9
PSO384G4844 Papaver somniferum HOM05D004686 ORTHO05D005988 3.0e-09 65.5 33 90.9
Pp3c3_25460 Physcomitrium patens HOM05D004686 ORTHO05D005988 3.0e-09 65.5 32 93.8
SEGI_01464 Sequoiadendron giganteum HOM05D004686 ORTHO05D005988 3.0e-09 65.5 32 93.8
Cc02_g09830 Coffea canephora HOM05D004686 ORTHO05D005988 4.0e-09 65.1 40 80.0
Ah.12g062170 Amaranthus hybridus HOM05D004686 ORTHO05D005988 5.2e-09 64.7 33 90.9
CANSAT56G3264 Cannabis sativa HOM05D004686 ORTHO05D005988 5.2e-09 64.7 32 93.8
Cpa.g.sc563.1 Carica papaya HOM05D004686 ORTHO05D005988 5.2e-09 64.7 32 93.8
Eucgr.G02697 Eucalyptus grandis HOM05D004686 ORTHO05D005988 5.2e-09 64.7 32 93.8
Glyma.20G242200 Glycine max HOM05D004686 ORTHO05D005988 5.2e-09 64.7 32 93.8
Lalb_Chr06g0164101 Lupinus albus HOM05D004686 ORTHO05D005988 5.2e-09 64.7 32 93.8
Manes.10G058150 Manihot esculenta HOM05D004686 ORTHO05D005988 5.2e-09 64.7 32 93.8
Nn5g28600 Nelumbo nucifera HOM05D004686 ORTHO05D005988 5.2e-09 64.7 32 93.8
Sabra10G0185800 Salix brachista HOM05D001373 ORTHO05D005988 5.2e-09 64.7 32 93.8
Sc20g0001200 Simmondsia chinensis HOM05D004686 ORTHO05D005988 5.2e-09 64.7 33 90.9
Solyc11g007120.2 Solanum lycopersicum HOM05D004686 ORTHO05D005988 5.2e-09 64.7 33 90.9
Sopen11g003040 Solanum pennellii HOM05D004686 ORTHO05D005988 5.2e-09 64.7 33 90.9
VMungo0720G1764 Vigna mungo HOM05D004686 ORTHO05D005988 5.2e-09 64.7 33 90.9
AT3G20970 Arabidopsis thaliana HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
MSTRG.9090 Avicennia marina HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
BcaB06g26171 Brassica carinata HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
BcaC05g26273 Brassica carinata HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
BcaC05g28207 Brassica carinata HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
A05p27770 Brassica napus HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
C05p22850 Brassica napus HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
C05p43110 Brassica napus HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
BolC5t33041H Brassica oleracea HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
BraA05t21664Z Brassica rapa HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
Carub.0003s2093 Capsella rubella HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
CARHR096860 Cardamine hirsuta HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
CiPaw.13G038400 Carya illinoinensis HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
Thhalv10021272m.g Eutrema salsugineum HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
Gohir.A05G287600 Gossypium hirsutum HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
HanXRQChr07g0194231 Helianthus annuus HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
HanXRQChr11g0342241 Helianthus annuus HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
Lj2C31G19 Lonicera japonica HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
QL04p044815 Quercus lobata HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
Rhsim09G0142900 Rhododendron simsii HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
Sp3g18970 Schrenkiella parvula HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
THA.LOC104816877 Tarenaya hassleriana HOM05D004686 ORTHO05D005988 6.8e-09 64.3 33 90.9
Thecc.10G107700 Theobroma cacao HOM05D004686 ORTHO05D005988 6.8e-09 64.3 32 90.6
AagrBONN_evm.TU.Sc2ySwM_117.1090 Anthoceros agrestis HOM05D004686 ORTHO05D005988 8.8e-09 63.9 32 90.6
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 1.2e-08 63.5 33 90.9
TPR.G10412 Trifolium pratense HOM05D004686 ORTHO05D005988 1.2e-08 63.5 33 90.9
Cfa026205 Carpinus fangiana HOM05D004686 ORTHO05D005988 1.5e-08 63.2 40 67.5
CDE08G1288 Ceratophyllum demersum HOM05D004686 ORTHO05D005988 1.5e-08 63.2 32 90.6
Potri.010G237400 Populus trichocarpa HOM05D004686 ORTHO05D005988 1.5e-08 63.2 32 90.6
TAR636G3245 Trochodendron aralioides HOM05D004686 ORTHO05D005988 1.5e-08 63.2 32 90.6
Oeu030507.2 Olea europaea HOM05D004686 ORTHO05D005988 2.6e-08 62.4 33 87.9
Oeu030509.1 Olea europaea HOM05D004686 ORTHO05D005988 2.6e-08 62.4 33 87.9
DCAR_019313 Daucus carota HOM05D004686 ORTHO05D005988 3.4e-08 62.0 33 84.8
Nitab4.5_0001437g0190 Nicotiana tabacum HOM05D004686 ORTHO05D005988 3.4e-08 62.0 32 90.6
Nitab4.5_0003774g0030 Nicotiana tabacum HOM05D004686 ORTHO05D005988 3.4e-08 62.0 32 90.6
Carub.0162s0001 Capsella rubella HOM05D004686 ORTHO05D005988 4.4e-08 61.6 33 84.8
ClCG08G008200 Citrullus lanatus HOM05D004686 ORTHO05D005988 4.4e-08 61.6 32 87.5
MELO3C019892.2 Cucumis melo HOM05D004686 ORTHO05D005988 4.4e-08 61.6 32 87.5
CsaV3_6G004170 Cucumis sativus L. HOM05D004686 ORTHO05D005988 4.4e-08 61.6 32 87.5
Migut.F00905 Erythranthe guttata HOM05D004686 ORTHO05D005988 4.4e-08 61.6 32 90.6
Phvul.007G008000 Phaseolus vulgaris HOM05D004686 ORTHO05D005988 4.4e-08 61.6 33 87.9
Psat6g239000 Pisum sativum HOM05D004686 ORTHO05D005988 4.4e-08 61.6 33 87.9
SalBow6G2690 Salvia bowleyana HOM05D004686 ORTHO05D005988 4.4e-08 61.6 32 90.6
unitig_0.g763 Utricularia gibba HOM05D004686 ORTHO05D005988 4.4e-08 61.6 32 90.6
Atru.chr4.937 Acer truncatum HOM05D004686 ORTHO05D005988 7.5e-08 60.8 32 87.5
EL10Ac5g11629 Beta vulgaris HOM05D004686 ORTHO05D005988 7.5e-08 60.8 32 87.5
Aa31LG10G3560 Aethionema arabicum HOM05D004686 ORTHO05D005988 9.8e-08 60.5 32 87.5
AL1G59240 Arabidopsis lyrata HOM05D004686 ORTHO05D005988 9.8e-08 60.5 32 87.5
AT1G51390 Arabidopsis thaliana HOM05D004686 ORTHO05D005988 9.8e-08 60.5 32 87.5
BcaB07g33585 Brassica carinata HOM05D004686 ORTHO05D005988 9.8e-08 60.5 32 87.5
BcaC08g43308 Brassica carinata HOM05D004686 ORTHO05D005988 9.8e-08 60.5 32 87.5
A06p02520 Brassica napus HOM05D004686 ORTHO05D005988 9.8e-08 60.5 32 87.5
C06p06550 Brassica napus HOM05D004686 ORTHO05D005988 9.8e-08 60.5 32 87.5
BolC6t35767H Brassica oleracea HOM05D004686 ORTHO05D005988 9.8e-08 60.5 32 87.5
BraA06t23459Z Brassica rapa HOM05D004686 ORTHO05D005988 9.8e-08 60.5 32 87.5
Carub.0001s4026 Capsella rubella HOM05D004686 ORTHO05D005988 9.8e-08 60.5 32 87.5
CARHR041540 Cardamine hirsuta HOM05D004686 ORTHO05D005988 9.8e-08 60.5 32 87.5
Thhalv10011711m.g Eutrema salsugineum HOM05D004686 ORTHO05D005988 9.8e-08 60.5 32 87.5
Sp1g38060 Schrenkiella parvula HOM05D004686 ORTHO05D005988 9.8e-08 60.5 32 87.5
Medtr1g069215 Medicago truncatula HOM05D004686 ORTHO05D005988 1.3e-07 60.1 33 84.8
Medtr3g073070 Medicago truncatula HOM05D004686 ORTHO05D005988 1.3e-07 60.1 33 84.8
SMO119G0422 Selaginella moellendorffii HOM05D004686 ORTHO05D005988 1.7e-07 59.7 31 87.1
SGA_v2.0_scaffold62G21346 Striga asiatica HOM05D004686 ORTHO05D005988 1.7e-07 59.7 33 84.8
BcaB02g10852 Brassica carinata HOM05D004686 ORTHO05D001378 2.2e-07 59.3 40 70.0
Sed0018572 Sechium edule HOM05D004686 ORTHO05D005988 2.2e-07 59.3 32 81.2
AL3G34930 Arabidopsis lyrata HOM05D004686 ORTHO05D005988 2.8e-07 58.9 28 96.4
Mapoly0010s0052 Marchantia polymorpha HOM05D004686 ORTHO05D005988 2.8e-07 58.9 31 83.9
Nitab4.5_0001437g0120 Nicotiana tabacum HOM05D004686 ORTHO05D005988 2.8e-07 58.9 32 84.4
AagrBONN_evm.TU.Sc2ySwM_117.3971 Anthoceros agrestis HOM05D004686 ORTHO05D005988 3.7e-07 58.5 30 96.7
Cre12.g504150 Chlamydomonas reinhardtii HOM05D004686 ORTHO05D005988 4.8e-07 58.2 35 74.3
BcaC06g36644 Brassica carinata HOM05D004686 ORTHO05D005988 8.3e-07 57.4 33 81.8
C07p01900 Brassica napus HOM05D004686 ORTHO05D005988 8.3e-07 57.4 33 81.8
BolC7t40596H Brassica oleracea HOM05D004686 ORTHO05D005988 8.3e-07 57.4 33 81.8
CBR_g48305 Chara braunii HOM05D004686 ORTHO05D005988 8.3e-07 57.4 31 80.6
Pp3c10_14710 Physcomitrium patens HOM05D004686 ORTHO05D005988 8.3e-07 57.4 30 90.0
BcaB03g16327 Brassica carinata HOM05D002341 ORTHO05D039489 9.1e-06 53.9 45 62.2


User provided reference genes

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