Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 2.0e-26 121.7 62 100.0
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.4e-19 99.0 61 80.3
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 9.8e-18 92.8 61 72.1
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 9.8e-18 92.8 61 75.4
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 1.3e-17 92.4 60 75.0
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 2.2e-17 91.7 61 68.9
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 2.9e-17 91.3 62 71.0
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 2.9e-17 91.3 62 69.4
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 2.9e-17 91.3 62 69.4
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 4.9e-17 90.5 59 72.9
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 4.9e-17 90.5 62 71.0
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 4.9e-17 90.5 62 71.0
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 4.9e-17 90.5 62 71.0
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 6.4e-17 90.1 60 71.7
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 6.4e-17 90.1 59 72.9
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.1e-16 89.4 59 71.2
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 1.4e-16 89.0 59 71.2
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 1.9e-16 88.6 60 71.7
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 1.9e-16 88.6 60 71.7
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 2.4e-16 88.2 59 72.9
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 3.2e-16 87.8 60 70.0
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 4.1e-16 87.4 60 65.0
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 4.1e-16 87.4 60 68.3
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 4.1e-16 87.4 60 68.3
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 4.1e-16 87.4 61 63.9
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 4.1e-16 87.4 60 68.3
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 5.4e-16 87.0 62 66.1
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 7.0e-16 86.7 60 68.3
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 7.0e-16 86.7 62 71.0
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 7.0e-16 86.7 58 72.4
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 9.2e-16 86.3 60 68.3
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 9.2e-16 86.3 60 66.7
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 1.2e-15 85.9 58 70.7
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 1.2e-15 85.9 60 66.7
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 1.2e-15 85.9 58 70.7
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.6e-15 85.5 62 66.1
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 2.0e-15 85.1 61 68.9
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.7e-15 84.7 60 66.7
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 2.7e-15 84.7 59 67.8
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 2.7e-15 84.7 60 66.7
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 4.6e-15 84.0 58 69.0
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 4.6e-15 84.0 61 63.9
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 6.0e-15 83.6 60 65.0
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 7.8e-15 83.2 60 70.0
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 1.3e-14 82.4 61 60.7
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 1.3e-14 82.4 60 66.7
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.3e-14 82.4 60 65.0
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 1.7e-14 82.0 60 66.7
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 2.3e-14 81.6 58 69.0
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 3.0e-14 81.3 59 67.8
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 3.0e-14 81.3 60 61.7
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 3.0e-14 81.3 62 58.1
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 3.0e-14 81.3 60 61.7
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 3.9e-14 80.9 59 62.7
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 3.9e-14 80.9 62 59.7
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 3.9e-14 80.9 61 62.3
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 3.9e-14 80.9 59 64.4
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 3.9e-14 80.9 59 57.6
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 6.6e-14 80.1 59 59.3
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 6.6e-14 80.1 58 62.1
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 8.6e-14 79.7 62 58.1
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 8.6e-14 79.7 58 65.5
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 1.1e-13 79.3 58 62.1
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.1e-13 79.3 58 60.3
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.5e-13 79.0 59 61.0
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 1.5e-13 79.0 60 63.3
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 2.5e-13 78.2 60 60.0
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 2.5e-13 78.2 59 61.0
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.5e-13 78.2 58 60.3
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 2.5e-13 78.2 58 60.3
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 3.3e-13 77.8 59 61.0
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 3.3e-13 77.8 60 61.7
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 4.3e-13 77.4 59 59.3
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 4.3e-13 77.4 60 56.7
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 5.6e-13 77.0 54 72.2
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 1.2e-12 75.9 59 61.0
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 1.2e-12 75.9 59 61.0
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 1.2e-12 75.9 60 55.0
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 1.2e-12 75.9 59 59.3
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 1.6e-12 75.5 55 63.6
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 1.6e-12 75.5 60 58.3
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 2.1e-12 75.1 60 60.0
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 2.8e-12 74.7 61 57.4
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 2.8e-12 74.7 58 56.9
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 3.6e-12 74.3 59 57.6
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 3.6e-12 74.3 60 61.7
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 3.6e-12 74.3 60 60.0
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 6.2e-12 73.6 60 61.7
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 1.1e-11 72.8 62 54.8
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 3.1e-11 71.2 52 69.2
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 4.0e-11 70.9 60 51.7
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 4.0e-11 70.9 58 60.3
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 4.0e-11 70.9 60 48.3
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 5.2e-11 70.5 60 51.7
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 6.8e-11 70.1 45 75.6
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 1.2e-10 69.3 60 51.7
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 1.5e-10 68.9 60 51.7
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 1.5e-10 68.9 60 51.7
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 1.5e-10 68.9 60 51.7
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 3.4e-10 67.8 60 50.0
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 3.4e-10 67.8 60 50.0
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 3.4e-10 67.8 62 53.2
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 4.4e-10 67.4 45 66.7
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 5.8e-10 67.0 60 50.0
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 5.8e-10 67.0 60 50.0
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 7.5e-10 66.6 60 48.3
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 1.3e-09 65.9 59 50.8
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 1.7e-09 65.5 59 49.2
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 2.2e-09 65.1 59 49.2
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 2.2e-09 65.1 60 50.0
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 2.9e-09 64.7 60 48.3
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 2.9e-09 64.7 60 48.3
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 2.9e-09 64.7 60 48.3
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 3.7e-09 64.3 60 48.3
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 3.7e-09 64.3 60 48.3
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 3.7e-09 64.3 60 48.3
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 4.9e-09 63.9 60 48.3
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 4.9e-09 63.9 60 48.3
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 4.9e-09 63.9 60 48.3
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 6.4e-09 63.5 60 48.3
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 6.4e-09 63.5 60 48.3
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 8.3e-09 63.2 60 46.7
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 8.3e-09 63.2 60 46.7
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 1.4e-08 62.4 60 48.3
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 1.9e-08 62.0 60 48.3
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 1.9e-08 62.0 58 50.0
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 2.4e-08 61.6 37 78.4
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 2.4e-08 61.6 60 45.0
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 2.4e-08 61.6 60 46.7
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 3.2e-08 61.2 60 46.7
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 3.2e-08 61.2 62 50.0
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 3.2e-08 61.2 60 46.7
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 3.2e-08 61.2 60 46.7
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 3.2e-08 61.2 60 46.7
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 4.1e-08 60.8 60 46.7
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 9.2e-08 59.7 57 49.1
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 4.6e-07 57.4 38 65.8
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 7.8e-07 56.6 42 61.9
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 1.0e-06 56.2 59 42.4
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.0e-06 56.2 40 65.0


User provided reference genes

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