Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.4e-71 270.8 128 100.0
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.6e-70 269.2 128 99.2
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.1e-44 183.3 94 88.3
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 3.3e-44 181.8 96 85.4
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 3.3e-44 181.8 96 85.4
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 2.2e-43 179.1 96 85.4
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 3.1e-42 175.3 96 83.3
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 5.3e-42 174.5 96 83.3
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 2.6e-41 172.2 96 81.2
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 2.6e-41 172.2 96 79.2
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 3.4e-41 171.8 107 74.8
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 7.7e-41 170.6 95 83.2
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 1.0e-40 170.2 96 79.2
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 1.3e-40 169.9 94 80.9
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 5.0e-40 167.9 96 80.2
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 6.5e-40 167.5 94 80.9
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 6.5e-40 167.5 96 77.1
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 8.5e-40 167.2 120 69.2
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.1e-39 166.8 96 76.0
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 4.2e-39 164.9 96 75.0
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 5.5e-39 164.5 96 76.0
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 7.2e-39 164.1 96 75.0
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 2.7e-38 162.2 94 77.7
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 6.1e-38 161.0 96 72.9
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 6.1e-38 161.0 108 68.5
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 7.9e-38 160.6 96 74.0
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 7.9e-38 160.6 96 74.0
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 1.4e-37 159.8 96 74.0
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 1.4e-37 159.8 97 75.3
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.4e-37 159.8 96 77.1
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 3.9e-37 158.3 97 74.2
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 3.9e-37 158.3 97 73.2
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 3.9e-37 158.3 95 74.7
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 5.1e-37 157.9 99 71.7
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 8.8e-37 157.1 96 71.9
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 1.1e-36 156.8 95 73.7
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 2.0e-36 156.0 124 62.1
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 2.0e-36 156.0 98 70.4
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 3.3e-36 155.2 96 72.9
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 3.3e-36 155.2 99 69.7
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 3.3e-36 155.2 96 71.9
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 3.3e-36 155.2 96 72.9
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 3.3e-36 155.2 125 60.8
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 5.7e-36 154.5 96 70.8
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 5.7e-36 154.5 128 60.9
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 7.4e-36 154.1 124 57.3
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 7.4e-36 154.1 97 70.1
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 7.4e-36 154.1 96 72.9
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 9.7e-36 153.7 110 67.3
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 1.7e-35 152.9 96 69.8
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 1.7e-35 152.9 96 74.0
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.7e-35 152.9 96 71.9
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 2.2e-35 152.5 128 57.8
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 2.2e-35 152.5 95 71.6
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 3.7e-35 151.8 96 68.8
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 3.7e-35 151.8 93 72.0
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 3.7e-35 151.8 93 72.0
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 3.7e-35 151.8 92 71.7
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 6.3e-35 151.0 97 67.0
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 6.3e-35 151.0 97 68.0
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 6.3e-35 151.0 95 70.5
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 8.2e-35 150.6 93 71.0
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 1.1e-34 150.2 94 70.2
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 1.1e-34 150.2 121 57.0
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.1e-34 150.2 109 66.1
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 1.4e-34 149.8 96 67.7
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 1.4e-34 149.8 89 73.0
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 2.4e-34 149.1 83 77.1
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 9.1e-34 147.1 95 71.6
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 9.1e-34 147.1 112 63.4
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.5e-33 146.4 91 70.3
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 1.5e-33 146.4 91 70.3
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 1.5e-33 146.4 97 68.0
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 2.0e-33 146.0 97 67.0
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 2.6e-33 145.6 121 55.4
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 2.6e-33 145.6 96 66.7
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 7.7e-33 144.1 97 67.0
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 7.7e-33 144.1 95 65.3
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 7.7e-33 144.1 91 69.2
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 7.7e-33 144.1 80 78.8
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 7.7e-33 144.1 96 67.7
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.2e-32 142.5 106 65.1
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 6.5e-32 141.0 93 63.4
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 6.5e-32 141.0 102 63.7
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 6.5e-32 141.0 83 74.7
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 8.5e-32 140.6 97 63.9
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.1e-31 140.2 97 64.9
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 1.4e-31 139.8 93 62.4
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 1.4e-31 139.8 98 63.3
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 1.4e-31 139.8 88 69.3
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 1.4e-31 139.8 97 63.9
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 1.9e-31 139.4 97 64.9
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 2.5e-31 139.0 98 62.2
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 4.2e-31 138.3 96 62.5
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 7.2e-31 137.5 98 64.3
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 1.2e-30 136.7 93 60.2
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 1.2e-30 136.7 97 62.9
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 1.6e-30 136.3 114 57.9
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 2.1e-30 136.0 114 57.0
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 4.7e-30 134.8 79 73.4
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 4.7e-30 134.8 97 61.9
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 4.7e-30 134.8 87 66.7
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 7.9e-30 134.0 114 56.1
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 1.0e-29 133.7 114 55.3
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 1.8e-29 132.9 96 62.5
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 3.0e-29 132.1 97 60.8
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 3.0e-29 132.1 99 62.6
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 3.0e-29 132.1 88 63.6
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 3.9e-29 131.7 87 65.5
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 3.9e-29 131.7 100 57.0
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 3.9e-29 131.7 125 52.0
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 5.1e-29 131.3 88 63.6
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 5.1e-29 131.3 100 62.0
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 5.1e-29 131.3 79 70.9
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 6.7e-29 131.0 96 61.5
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 6.7e-29 131.0 82 68.3
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 8.8e-29 130.6 114 54.4
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 8.8e-29 130.6 114 54.4
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 8.8e-29 130.6 114 55.3
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 8.8e-29 130.6 120 54.2
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 1.1e-28 130.2 96 61.5
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 2.0e-28 129.4 115 55.7
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 2.0e-28 129.4 97 60.8
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 2.0e-28 129.4 79 70.9
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 2.6e-28 129.0 105 56.2
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 3.3e-28 128.6 96 58.3
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 4.4e-28 128.3 82 63.4
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 4.4e-28 128.3 95 58.9
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 5.7e-28 127.9 94 59.6
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 7.4e-28 127.5 95 62.1
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 7.4e-28 127.5 93 64.5
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 9.7e-28 127.1 96 57.3
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 1.3e-27 126.7 93 57.0
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 1.7e-27 126.3 96 59.4
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 2.8e-27 125.6 83 66.3
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 3.7e-27 125.2 115 51.3
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 3.7e-27 125.2 79 63.3
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 8.2e-27 124.0 88 61.4
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 1.1e-26 123.6 111 52.3
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 1.1e-26 123.6 82 65.9
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 1.8e-26 122.9 127 48.8
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 2.4e-26 122.5 96 57.3
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 2.4e-26 122.5 96 57.3
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.2e-25 120.2 59 88.1
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 1.5e-25 119.8 93 54.8
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 2.0e-25 119.4 93 53.8
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 2.0e-25 119.4 104 56.7
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 4.5e-25 118.2 62 79.0
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 1.3e-19 100.1 82 51.2
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.1e-18 97.1 78 52.6
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 2.4e-18 95.9 78 50.0
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 9.1e-18 94.0 80 52.5
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 1.1e-15 87.0 121 40.5
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.5e-15 85.9 111 47.7
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 9.4e-15 84.0 81 49.4
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 2.7e-14 82.4 59 54.2
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 4.7e-14 81.6 46 76.1
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 4.8e-11 71.6 61 47.5
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 9.1e-10 67.4 99 34.3
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 5.9e-09 64.7 36 69.4
CSS0047531 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D112748 5.9e-09 64.7 37 81.1
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 3.6e-06 55.5 55 40.0


User provided reference genes

Program Settings