Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.7e-114 416.0 205 100.0
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 3.9e-103 378.3 189 97.4
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 3.9e-103 378.3 189 96.3
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 5.1e-103 377.9 189 96.3
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 1.1e-102 376.7 189 96.3
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.1e-102 376.7 189 96.3
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 1.1e-102 376.7 189 95.2
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 1.5e-102 376.3 189 95.2
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 1.9e-102 375.9 189 95.2
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 4.3e-102 374.8 189 95.2
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 4.3e-102 374.8 189 95.2
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 5.6e-102 374.4 189 95.8
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 5.6e-102 374.4 189 95.8
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 5.6e-102 374.4 189 95.8
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 5.6e-102 374.4 189 95.2
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 7.3e-102 374.0 189 95.8
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 7.3e-102 374.0 189 95.2
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 7.3e-102 374.0 189 95.2
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 7.3e-102 374.0 189 95.8
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 9.5e-102 373.6 189 94.7
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 9.5e-102 373.6 189 94.7
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 9.5e-102 373.6 189 94.7
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 1.6e-101 372.9 189 96.3
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 1.6e-101 372.9 189 94.7
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 1.6e-101 372.9 189 95.2
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 2.8e-101 372.1 189 95.8
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 2.8e-101 372.1 189 95.2
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 2.8e-101 372.1 188 96.8
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 3.6e-101 371.7 189 94.7
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 3.6e-101 371.7 189 94.2
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 3.6e-101 371.7 189 94.2
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 4.7e-101 371.3 197 88.8
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 6.2e-101 370.9 189 96.3
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 8.1e-101 370.5 189 94.7
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 1.4e-100 369.8 189 93.1
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 1.8e-100 369.4 189 94.2
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.8e-100 369.4 189 95.2
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.8e-100 369.4 189 93.1
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.8e-100 369.4 189 93.1
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 1.8e-100 369.4 189 93.1
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 2.3e-100 369.0 188 93.6
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 3.1e-100 368.6 188 93.6
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 4.0e-100 368.2 189 94.2
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 6.8e-100 367.5 189 93.7
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 8.9e-100 367.1 189 93.7
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 8.9e-100 367.1 195 93.8
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 8.9e-100 367.1 189 92.1
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 1.2e-99 366.7 189 93.7
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 1.2e-99 366.7 191 93.2
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 1.5e-99 366.3 188 93.1
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 1.5e-99 366.3 189 93.7
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 2.0e-99 365.9 189 95.2
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 2.6e-99 365.5 189 94.2
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 2.6e-99 365.5 189 92.6
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 4.4e-99 364.8 189 94.7
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 5.8e-99 364.4 216 84.7
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 7.6e-99 364.0 189 93.7
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 7.6e-99 364.0 189 94.2
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 1.3e-98 363.2 189 92.6
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 1.3e-98 363.2 189 92.6
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 1.3e-98 363.2 189 92.6
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 1.7e-98 362.8 189 92.6
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 2.2e-98 362.5 210 85.7
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 2.2e-98 362.5 189 91.5
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 2.2e-98 362.5 188 93.1
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 2.9e-98 362.1 189 91.5
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 4.1e-97 358.2 189 92.1
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 4.1e-97 358.2 189 91.5
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 5.4e-97 357.8 201 89.1
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 7.1e-97 357.5 188 91.0
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 9.2e-97 357.1 188 93.6
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 1.6e-96 356.3 189 88.9
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 1.6e-96 356.3 189 89.4
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 2.1e-96 355.9 188 91.0
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 3.5e-96 355.1 196 88.3
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 3.5e-96 355.1 201 87.6
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 6.0e-96 354.4 189 88.4
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 1.0e-95 353.6 230 77.8
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 1.3e-95 353.2 207 86.0
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 1.7e-95 352.8 189 88.9
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 2.3e-95 352.4 230 78.3
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 5.1e-95 351.3 191 86.9
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 5.1e-95 351.3 189 87.8
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 1.5e-94 349.7 183 91.8
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 3.3e-94 348.6 189 86.2
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 9.6e-94 347.1 189 86.2
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 1.2e-93 346.7 189 85.7
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 2.1e-93 345.9 188 86.2
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 2.8e-93 345.5 188 86.2
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 2.8e-93 345.5 188 86.2
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 3.6e-93 345.1 189 85.7
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 3.6e-93 345.1 188 86.2
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 4.7e-93 344.7 188 85.6
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 2.4e-92 342.4 189 85.2
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 6.9e-92 340.9 188 85.6
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 5.8e-91 337.8 189 82.5
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.3e-90 336.7 181 91.7
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.3e-90 336.7 181 91.7
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 4.9e-90 334.7 189 82.0
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 8.4e-90 334.0 189 82.5
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 5.4e-89 331.3 189 81.0
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 7.8e-88 327.4 171 91.8
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 2.3e-87 325.9 160 99.4
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 2.3e-87 325.9 171 89.5
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 6.6e-87 324.3 189 79.4
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 9.6e-86 320.5 189 81.0
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.3e-85 320.1 188 78.2
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 2.8e-85 318.9 167 92.2
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 8.1e-85 317.4 188 78.2
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 1.3e-82 310.1 160 91.9
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 2.1e-80 302.8 160 90.6
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 1.8e-79 299.7 161 90.1
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 5.3e-76 288.1 173 84.4
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.0e-71 273.9 209 67.9
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 5.3e-68 261.5 188 68.1
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 1.6e-64 250.0 140 87.1
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.7e-61 238.8 188 62.8
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.0e-59 233.0 183 61.7
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 2.5e-57 226.1 114 93.9
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 9.3e-57 224.2 149 75.2
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 4.6e-56 221.9 206 52.9
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 1.0e-55 220.7 129 84.5
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 6.3e-53 211.5 109 94.5
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 6.3e-53 211.5 112 90.2
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.2e-51 207.2 158 65.8
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.5e-51 206.8 109 93.6
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 5.9e-51 204.9 106 87.7
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 2.2e-50 203.0 109 91.7
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.8e-39 166.8 80 96.2
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 3.9e-39 165.6 80 95.0
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 1.1e-38 164.1 80 93.8
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 3.3e-38 162.5 80 93.8
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 1.3e-37 160.6 84 91.7
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 3.7e-37 159.1 81 88.9
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 5.9e-35 151.8 81 91.4
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 1.9e-33 146.7 72 93.1
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.2e-33 146.0 157 45.9
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 1.4e-31 140.6 69 94.2
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 2.3e-31 139.8 69 91.3
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 3.7e-29 132.5 87 79.3
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 3.5e-27 125.9 68 85.3
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 1.7e-26 123.6 68 83.8
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 1.7e-26 123.6 68 83.8
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 1.2e-19 100.9 51 88.2
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 1.9e-17 93.6 47 87.2
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 1.1e-12 77.8 40 85.0
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 1.1e-12 77.8 40 85.0
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 1.1e-12 77.8 40 85.0
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 1.1e-12 77.8 40 85.0
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 9.2e-12 74.7 37 89.2


User provided reference genes

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