Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011024 Camellia sinensis var. sinensis HOM05D002889 ORTHO05D028411 1.6e-52 209.1 106 100.0
Oeu017344.1 Olea europaea HOM05D002889 ORTHO05D003366 2.1e-12 75.9 41 87.8
RcHm_v2.0_Chr6g0285551 Rosa chinensis HOM05D002889 ORTHO05D003366 2.1e-12 75.9 48 79.2
FvH4_2g19850 Fragaria vesca HOM05D002889 ORTHO05D003366 2.8e-12 75.5 48 79.2
FAN15G1177 Fragaria x ananassa HOM05D002889 ORTHO05D003366 2.8e-12 75.5 48 79.2
FAN24G0698 Fragaria x ananassa HOM05D002889 ORTHO05D003366 2.8e-12 75.5 48 79.2
FAN27G1075 Fragaria x ananassa HOM05D002889 ORTHO05D003366 2.8e-12 75.5 48 79.2
DCAR_018539 Daucus carota HOM05D002889 ORTHO05D003366 3.6e-12 75.1 48 77.1
Prupe.8G209400 Prunus persica HOM05D002889 ORTHO05D003366 3.6e-12 75.1 48 77.1
CiPaw.03G153400 Carya illinoinensis HOM05D002889 ORTHO05D003366 4.7e-12 74.7 48 77.1
Cc01_g17450 Coffea canephora HOM05D002889 ORTHO05D003366 4.7e-12 74.7 48 77.1
MSTRG.12505 Avicennia marina HOM05D002889 ORTHO05D003366 6.2e-12 74.3 48 77.1
Cfa002518 Carpinus fangiana HOM05D002889 ORTHO05D003366 6.2e-12 74.3 48 77.1
Haze_24745 Corylus avellana HOM05D002889 ORTHO05D003366 6.2e-12 74.3 48 77.1
Dinv19241 Davidia involucrata HOM05D002889 ORTHO05D003366 6.2e-12 74.3 41 85.4
Lj1A81G48 Lonicera japonica HOM05D002889 ORTHO05D003366 6.2e-12 74.3 48 77.1
Oeu015449.1 Olea europaea HOM05D002889 ORTHO05D003366 6.2e-12 74.3 48 77.1
Actinidia37570 Actinidia chinensis HOM05D002889 ORTHO05D003366 1.1e-11 73.6 40 87.5
CSS0022688 Camellia sinensis var. sinensis HOM05D002889 ORTHO05D003366 1.1e-11 73.6 40 87.5
Cpa.g.sc8.204 Carica papaya HOM05D002889 ORTHO05D003366 1.1e-11 73.6 40 87.5
DCAR_012623 Daucus carota HOM05D002889 ORTHO05D003366 1.1e-11 73.6 99 48.5
Dinv43034 Davidia involucrata HOM05D002889 ORTHO05D003366 1.1e-11 73.6 40 87.5
Lsat_1_v5_gn_8_90261 Lactuca sativa HOM05D002889 ORTHO05D003366 1.1e-11 73.6 40 87.5
Rhsim13G0041900 Rhododendron simsii HOM05D002889 ORTHO05D003366 1.1e-11 73.6 40 87.5
Thecc.01G236600 Theobroma cacao HOM05D002889 ORTHO05D003366 1.1e-11 73.6 48 77.1
TAR365G1138 Trochodendron aralioides HOM05D002889 ORTHO05D003366 1.1e-11 73.6 40 87.5
vmacro02730 Vaccinium macrocarpon HOM05D002889 ORTHO05D003366 1.1e-11 73.6 40 87.5
CiPaw.04G108600 Carya illinoinensis HOM05D002889 ORTHO05D003366 1.4e-11 73.2 48 75.0
THA.LOC104820061 Tarenaya hassleriana HOM05D002889 ORTHO05D003366 1.4e-11 73.2 40 85.0
MD05G1182800 Malus domestica HOM05D002889 ORTHO05D003366 1.8e-11 72.8 48 75.0
MD10G1170900 Malus domestica HOM05D002889 ORTHO05D003366 1.8e-11 72.8 48 75.0
ECA236G1707 Erigeron canadensis HOM05D002889 ORTHO05D003366 2.3e-11 72.4 40 85.0
QL09p043970 Quercus lobata HOM05D002889 ORTHO05D003366 2.3e-11 72.4 48 75.0
TWI23G0798 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 2.3e-11 72.4 40 85.0
unitig_746.g26747 Utricularia gibba HOM05D002889 ORTHO05D003366 2.3e-11 72.4 85 51.8
Aqoxy5G00053 Aquilegia oxysepala HOM05D002889 ORTHO05D003366 3.1e-11 72.0 40 85.0
Eucgr.H00823 Eucalyptus grandis HOM05D002889 ORTHO05D003366 3.1e-11 72.0 40 85.0
Manes.12G044400 Manihot esculenta HOM05D002889 ORTHO05D003366 3.1e-11 72.0 48 72.9
SalBow6G0687 Salvia bowleyana HOM05D002889 ORTHO05D003366 4.0e-11 71.6 48 70.8
Migut.N02247 Erythranthe guttata HOM05D002889 ORTHO05D003366 5.2e-11 71.2 40 82.5
Glyma.19G171200 Glycine max HOM05D002889 ORTHO05D003366 5.2e-11 71.2 48 75.0
Gohir.A08G192800 Gossypium hirsutum HOM05D002889 ORTHO05D003366 5.2e-11 71.2 40 85.0
Gohir.D08G210800 Gossypium hirsutum HOM05D002889 ORTHO05D003366 5.2e-11 71.2 40 85.0
Gorai.004G223500 Gossypium raimondii HOM05D002889 ORTHO05D003366 5.2e-11 71.2 40 85.0
Lsat_1_v5_gn_9_11241 Lactuca sativa HOM05D002889 ORTHO05D003366 5.2e-11 71.2 48 72.9
MBI10_g16806_MAGBIO Magnolia biondii HOM05D002889 ORTHO05D003366 5.2e-11 71.2 40 85.0
Nn3g19858 Nelumbo nucifera HOM05D002889 ORTHO05D003366 5.2e-11 71.2 48 70.8
Rhsim01G0258400 Rhododendron simsii HOM05D002889 ORTHO05D003366 5.2e-11 71.2 40 82.5
TWI14G1217 Tripterygium wilfordii HOM05D002889 ORTHO05D003366 5.2e-11 71.2 40 82.5
vmacro14774 Vaccinium macrocarpon HOM05D002889 ORTHO05D003366 5.2e-11 71.2 40 82.5
VMungo1383G1051 Vigna mungo HOM05D002889 ORTHO05D003366 5.2e-11 71.2 48 75.0
Ah.08g213900 Amaranthus hybridus HOM05D002889 ORTHO05D003366 6.8e-11 70.9 40 85.0
EL10Ac7g17762 Beta vulgaris HOM05D002889 ORTHO05D003366 6.8e-11 70.9 40 85.0
Duzib133G1137 Durio zibethinus HOM05D002889 ORTHO05D003366 6.8e-11 70.9 48 72.9
Eucgr.K03590 Eucalyptus grandis HOM05D002889 ORTHO05D003366 6.8e-11 70.9 40 82.5
Lalb_Chr20g0113361 Lupinus albus HOM05D002889 ORTHO05D003366 6.8e-11 70.9 48 75.0
Potri.002G253200 Populus trichocarpa HOM05D002889 ORTHO05D003366 6.8e-11 70.9 48 72.9
Sabra02G0192400 Salix brachista HOM05D002889 ORTHO05D003366 6.8e-11 70.9 48 72.9
Hund18347 Selenicereus undatus HOM05D002889 ORTHO05D003366 6.8e-11 70.9 40 85.0
TAR636G2078 Trochodendron aralioides HOM05D002889 ORTHO05D003366 6.8e-11 70.9 40 82.5
Atru.chr5.1927 Acer truncatum HOM05D002889 ORTHO05D003366 8.9e-11 70.5 40 85.0
Actinidia09497 Actinidia chinensis HOM05D002889 ORTHO05D003366 8.9e-11 70.5 40 85.0
Glyma.13G130000 Glycine max HOM05D002889 ORTHO05D003366 8.9e-11 70.5 47 74.5
Gorai.001G183300 Gossypium raimondii HOM05D002889 ORTHO05D003366 8.9e-11 70.5 48 72.9
HanXRQChr10g0287251 Helianthus annuus HOM05D002889 ORTHO05D003366 8.9e-11 70.5 40 85.0
Lj2C1137G6 Lonicera japonica HOM05D002889 ORTHO05D003366 8.9e-11 70.5 40 85.0
Manes.13G042800 Manihot esculenta HOM05D002889 ORTHO05D003366 8.9e-11 70.5 48 70.8
Gohir.A07G202300 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.2e-10 70.1 48 70.8
PSO170G4103 Papaver somniferum HOM05D002889 ORTHO05D003366 1.2e-10 70.1 40 82.5
PSO764G0331 Papaver somniferum HOM05D002889 ORTHO05D003366 1.2e-10 70.1 40 82.5
Phvul.001G168400 Phaseolus vulgaris HOM05D002889 ORTHO05D003366 1.2e-10 70.1 48 72.9
Hund05497 Selenicereus undatus HOM05D002889 ORTHO05D003366 1.2e-10 70.1 40 85.0
CAN.G941.45 Capsicum annuum HOM05D002889 ORTHO05D003366 1.5e-10 69.7 40 85.0
AUR62008857 Chenopodium quinoa HOM05D002889 ORTHO05D003366 1.5e-10 69.7 40 82.5
AUR62025387 Chenopodium quinoa HOM05D002889 ORTHO05D003366 1.5e-10 69.7 40 82.5
Gohir.A07G154000 Gossypium hirsutum HOM05D002889 ORTHO05D003366 1.5e-10 69.7 48 72.9
Lj1g0020070 Lotus japonicus HOM05D002889 ORTHO05D003366 1.5e-10 69.7 48 75.0
Peaxi162Scf00052g02011 Petunia axillaris HOM05D002889 ORTHO05D003366 1.5e-10 69.7 48 72.9
GSVIVG01028491001 Vitis vinifera HOM05D002889 ORTHO05D003366 1.5e-10 69.7 40 82.5
Ca_09624_v3 Cicer arietinum L. HOM05D002889 ORTHO05D003366 2.0e-10 69.3 47 72.3
Glyma.10G042600 Glycine max HOM05D002889 ORTHO05D003366 2.0e-10 69.3 47 72.3
Gohir.D07G160200 Gossypium hirsutum HOM05D002889 ORTHO05D003366 2.0e-10 69.3 48 70.8
Aa31LG8G17120 Aethionema arabicum HOM05D002889 ORTHO05D003366 2.6e-10 68.9 40 82.5
AL3G47890 Arabidopsis lyrata HOM05D002889 ORTHO05D003366 2.6e-10 68.9 40 82.5
AT2G20190 Arabidopsis thaliana HOM05D002889 ORTHO05D003366 2.6e-10 68.9 40 82.5
BcaB03g16811 Brassica carinata HOM05D002889 ORTHO05D003366 2.6e-10 68.9 40 82.5
BcaC04g22811 Brassica carinata HOM05D002889 ORTHO05D003366 2.6e-10 68.9 40 82.5
BcaNung04093 Brassica carinata HOM05D002889 ORTHO05D003366 2.6e-10 68.9 40 82.5
A07p00540 Brassica napus HOM05D002889 ORTHO05D003366 2.6e-10 68.9 40 82.5
A09p12740 Brassica napus HOM05D002889 ORTHO05D003366 2.6e-10 68.9 40 82.5
C07p00990 Brassica napus HOM05D002889 ORTHO05D003366 2.6e-10 68.9 40 82.5
C09p15080 Brassica napus HOM05D002889 ORTHO05D003366 2.6e-10 68.9 40 82.5
BolC9t54414H Brassica oleracea HOM05D002889 ORTHO05D003366 2.6e-10 68.9 40 82.5
BraA07t27848Z Brassica rapa HOM05D002889 ORTHO05D003366 2.6e-10 68.9 40 82.5
BraA09t36918Z Brassica rapa HOM05D002889 ORTHO05D003366 2.6e-10 68.9 40 82.5
Carub.0003s3449 Capsella rubella HOM05D002889 ORTHO05D003366 2.6e-10 68.9 40 82.5
CARHR110690 Cardamine hirsuta HOM05D002889 ORTHO05D003366 2.6e-10 68.9 40 82.5
Thhalv10001879m.g Eutrema salsugineum HOM05D002889 ORTHO05D003366 2.6e-10 68.9 40 82.5
Gohir.D07G208500 Gossypium hirsutum HOM05D002889 ORTHO05D003366 2.6e-10 68.9 48 68.8
Gorai.001G235400 Gossypium raimondii HOM05D002889 ORTHO05D003366 2.6e-10 68.9 48 68.8
HanXRQChr13g0409041 Helianthus annuus HOM05D002889 ORTHO05D003366 2.6e-10 68.9 40 82.5
Sp3g33430 Schrenkiella parvula HOM05D002889 ORTHO05D003366 2.6e-10 68.9 40 82.5
SGA_v2.0_scaffold1G00677 Striga asiatica HOM05D002889 ORTHO05D003366 2.6e-10 68.9 40 82.5
VMungo0720G0228 Vigna mungo HOM05D002889 ORTHO05D003366 2.6e-10 68.9 47 70.2
arahy.Tifrunner.gnm1.ann1.EIAU9G Arachis hypogaea HOM05D002889 ORTHO05D003366 3.4e-10 68.6 48 70.8
MSTRG.17535 Avicennia marina HOM05D002889 ORTHO05D003366 3.4e-10 68.6 48 70.8
Psat3g050160 Pisum sativum HOM05D002889 ORTHO05D003366 3.4e-10 68.6 40 82.5
TAR362G1318 Trochodendron aralioides HOM05D002889 ORTHO05D003366 3.4e-10 68.6 40 82.5
unitig_899.g15235 Utricularia gibba HOM05D002889 ORTHO05D003366 3.4e-10 68.6 35 91.4
Glyma.03G170000 Glycine max HOM05D002889 ORTHO05D003366 4.4e-10 68.2 48 70.8
Lalb_Chr25g0289711 Lupinus albus HOM05D002889 ORTHO05D003366 4.4e-10 68.2 48 70.8
Nn1g03087 Nelumbo nucifera HOM05D002889 ORTHO05D003366 4.4e-10 68.2 40 77.5
Nitab4.5_0000813g0100 Nicotiana tabacum HOM05D002889 ORTHO05D003366 4.4e-10 68.2 48 70.8
arahy.Tifrunner.gnm1.ann1.73DRY2 Arachis hypogaea HOM05D002889 ORTHO05D003366 5.8e-10 67.8 47 70.2
Ciclev10018498m.g Citrus clementina HOM05D002889 ORTHO05D003366 5.8e-10 67.8 48 68.8
Solyc09g063030.4 Solanum lycopersicum HOM05D002889 ORTHO05D003366 5.8e-10 67.8 48 70.8
Sopen09g025200 Solanum pennellii HOM05D002889 ORTHO05D003366 5.8e-10 67.8 48 70.8
arahy.Tifrunner.gnm1.ann1.CB4TML Arachis hypogaea HOM05D002889 ORTHO05D003366 7.6e-10 67.4 47 70.2
BcaC06g36696 Brassica carinata HOM05D002889 ORTHO05D003366 7.6e-10 67.4 40 80.0
BolC7t40536H Brassica oleracea HOM05D002889 ORTHO05D003366 7.6e-10 67.4 40 80.0
Ca_08769_v3 Cicer arietinum L. HOM05D002889 ORTHO05D003366 7.6e-10 67.4 40 80.0
ClCG09G009410 Citrullus lanatus HOM05D002889 ORTHO05D003366 7.6e-10 67.4 48 68.8
MELO3C024150.2 Cucumis melo HOM05D002889 ORTHO05D003366 7.6e-10 67.4 48 68.8
Lj5g0008167 Lotus japonicus HOM05D002889 ORTHO05D003366 7.6e-10 67.4 39 82.1
Medtr7g099480 Medicago truncatula HOM05D002889 ORTHO05D003366 7.6e-10 67.4 40 80.0
Nitab4.5_0002727g0040 Nicotiana tabacum HOM05D002889 ORTHO05D003366 7.6e-10 67.4 40 80.0
Nitab4.5_0003180g0050 Nicotiana tabacum HOM05D002889 ORTHO05D003366 7.6e-10 67.4 40 80.0
Phvul.007G156100 Phaseolus vulgaris HOM05D002889 ORTHO05D003366 7.6e-10 67.4 39 79.5
TPR.G7556 Trifolium pratense HOM05D002889 ORTHO05D003366 7.6e-10 67.4 40 80.0
arahy.Tifrunner.gnm1.ann1.PFSA3S Arachis hypogaea HOM05D002889 ORTHO05D003366 9.9e-10 67.0 48 68.8
Medtr1g069165 Medicago truncatula HOM05D002889 ORTHO05D003366 9.9e-10 67.0 47 70.2
Psat6g064880 Pisum sativum HOM05D002889 ORTHO05D003366 9.9e-10 67.0 47 70.2
SHI47266 Sapria himalayana HOM05D002889 ORTHO05D003366 9.9e-10 67.0 40 75.0
Sed0001453 Sechium edule HOM05D002889 ORTHO05D003366 9.9e-10 67.0 48 66.7
TPR.G35800 Trifolium pratense HOM05D002889 ORTHO05D003366 9.9e-10 67.0 47 70.2
Solyc06g008040.3 Solanum lycopersicum HOM05D002889 ORTHO05D003366 1.3e-09 66.6 40 82.5
Sopen06g002880 Solanum pennellii HOM05D002889 ORTHO05D003366 1.3e-09 66.6 40 82.5
SGA_v2.0_scaffold42G16158 Striga asiatica HOM05D002889 ORTHO05D003366 1.3e-09 66.6 48 68.8
CAN.G503.27 Capsicum annuum HOM05D002889 ORTHO05D003366 1.7e-09 66.2 48 70.8
CsaV3_7G025450 Cucumis sativus L. HOM05D002889 ORTHO05D003366 1.7e-09 66.2 48 66.7
Lalb_Chr02g0152941 Lupinus albus HOM05D002889 ORTHO05D003366 2.2e-09 65.9 47 70.2
PGR083G0457 Punica granatum HOM05D002889 ORTHO05D003366 2.9e-09 65.5 40 80.0
Os02g0617300 Oryza sativa ssp. japonica HOM05D002889 ORTHO05D003366 4.9e-09 64.7 40 75.0
Glyma.19G060900 Glycine max HOM05D002889 ORTHO05D003366 6.4e-09 64.3 47 68.1
Os04g0507500 Oryza sativa ssp. japonica HOM05D002889 ORTHO05D003366 6.4e-09 64.3 48 64.6
PGR044G2403 Punica granatum HOM05D002889 ORTHO05D003366 6.4e-09 64.3 40 77.5
Sed0016475 Sechium edule HOM05D002889 ORTHO05D003366 8.4e-09 63.9 48 64.6
SGA_v2.0_scaffold3G01589 Striga asiatica HOM05D002889 ORTHO05D003366 8.4e-09 63.9 67 52.2
HPP92_027293 Vanilla planifolia HOM05D002889 ORTHO05D003366 1.4e-08 63.2 40 75.0
ATR0787G124 Amborella trichopoda HOM05D002889 ORTHO05D003366 2.4e-08 62.4 48 66.7
CDE09G0867 Ceratophyllum demersum HOM05D002889 ORTHO05D003366 3.2e-08 62.0 35 80.0
SEGI_29841 Sequoiadendron giganteum HOM05D002889 ORTHO05D003366 3.2e-08 62.0 40 75.0
Zm00001eb077900 Zea mays HOM05D002889 ORTHO05D003366 7.1e-08 60.8 48 62.5
vmacro14019 Vaccinium macrocarpon HOM05D002889 ORTHO05D028411 1.2e-07 60.1 35 80.0
Zm00001eb426220 Zea mays HOM05D002889 ORTHO05D003366 1.2e-07 60.1 48 60.4
AagrBONN_evm.TU.Sc2ySwM_228.3600 Anthoceros agrestis HOM05D002889 ORTHO05D003366 1.6e-07 59.7 40 70.0
Duzib138G1300 Durio zibethinus HOM05D002889 ORTHO05D003366 2.1e-07 59.3 32 87.5
Mapoly0066s0036 Marchantia polymorpha HOM05D002889 ORTHO05D003366 6.0e-07 57.8 40 67.5
SGA_v2.0_scaffold88G27298 Striga asiatica HOM05D002889 ORTHO05D028411 6.0e-07 57.8 34 79.4
Pp3c8_18290 Physcomitrium patens HOM05D002889 ORTHO05D003366 7.8e-07 57.4 41 63.4
Zm00001eb116890 Zea mays HOM05D002889 ORTHO05D003366 1.3e-06 56.6 48 56.2
Peaxi162Scf00499g00610 Petunia axillaris HOM05D002889 ORTHO05D003366 2.3e-06 55.8 32 84.4
SGA_v2.0_scaffold22G09805 Striga asiatica HOM05D002889 ORTHO05D028411 3.0e-06 55.5 34 76.5
Pp3c24_11460 Physcomitrium patens HOM05D002889 ORTHO05D003366 8.6e-06 53.9 40 60.0


User provided reference genes

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