Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011017 Camellia sinensis var. sinensis HOM05D006072 ORTHO05D007363 1.5e-206 722.6 376 100.0
Actinidia24189 Actinidia chinensis HOM05D006072 ORTHO05D007363 1.1e-127 460.7 374 66.8
Dinv07032 Davidia involucrata HOM05D006072 ORTHO05D007363 1.7e-109 400.2 358 61.2
Hma1.2p1_0523F.1_g172190 Hydrangea macrophylla HOM05D006072 ORTHO05D007363 3.8e-104 382.5 386 58.0
Rhsim13G0107200 Rhododendron simsii HOM05D006072 ORTHO05D007363 2.3e-101 373.2 342 60.8
Oeu025733.1 Olea europaea HOM05D006072 ORTHO05D007363 4.8e-99 365.5 342 59.6
Nitab4.5_0000876g0020 Nicotiana tabacum HOM05D006072 ORTHO05D007363 2.1e-91 340.1 374 51.1
Oeu007228.1 Olea europaea HOM05D006072 ORTHO05D007363 1.4e-90 337.4 377 52.8
Cc02_g18000 Coffea canephora HOM05D006072 ORTHO05D007363 1.8e-90 337.0 370 52.4
Migut.N01215 Erythranthe guttata HOM05D006072 ORTHO05D007363 4.5e-89 332.4 391 50.4
Rhsim09G0083300 Rhododendron simsii HOM05D006072 ORTHO05D007363 4.5e-89 332.4 351 55.8
Cc01_g19360 Coffea canephora HOM05D006072 ORTHO05D007363 2.9e-88 329.7 353 52.1
Sc18g0004880 Simmondsia chinensis HOM05D006072 ORTHO05D007363 1.1e-87 327.8 300 58.3
CAN.G1.46 Capsicum annuum HOM05D006072 ORTHO05D007363 1.2e-86 324.3 373 48.5
Solyc10g051090.3 Solanum lycopersicum HOM05D006072 ORTHO05D007363 1.2e-86 324.3 362 50.0
GSVIVG01011560001 Vitis vinifera HOM05D006072 ORTHO05D007363 2.1e-86 323.6 344 53.5
Nitab4.5_0006309g0060 Nicotiana tabacum HOM05D006072 ORTHO05D007363 2.7e-86 323.2 338 55.3
TAR629G3443 Trochodendron aralioides HOM05D006072 ORTHO05D007363 2.7e-86 323.2 362 54.4
SGA_v2.0_scaffold55G19813 Striga asiatica HOM05D006072 ORTHO05D007363 3.5e-86 322.8 381 50.9
Nitab4.5_0004318g0070 Nicotiana tabacum HOM05D006072 ORTHO05D007363 4.6e-86 322.4 344 53.8
Sopen10g022790 Solanum pennellii HOM05D006072 ORTHO05D007363 4.6e-86 322.4 362 50.0
SalBow4G0595 Salvia bowleyana HOM05D006072 ORTHO05D007363 6.0e-86 322.0 319 54.2
Peaxi162Scf00003g00145 Petunia axillaris HOM05D006072 ORTHO05D007363 7.9e-86 321.6 366 50.0
Nn3g18504 Nelumbo nucifera HOM05D006072 ORTHO05D007363 2.3e-85 320.1 359 52.6
Peaxi162Scf00003g00149 Petunia axillaris HOM05D006072 ORTHO05D007363 3.9e-85 319.3 392 48.0
GSVIVG01011570001 Vitis vinifera HOM05D006072 ORTHO05D007363 6.7e-85 318.5 374 48.7
GSVIVG01011561001 Vitis vinifera HOM05D006072 ORTHO05D007363 5.7e-84 315.5 344 52.3
Sopen09g027060 Solanum pennellii HOM05D006072 ORTHO05D007363 1.6e-83 313.9 338 54.4
EL10Ac1g00741 Beta vulgaris HOM05D006072 ORTHO05D007363 2.1e-83 313.5 320 52.8
PGSC0003DMG400019330 Solanum tuberosum HOM05D006072 ORTHO05D007363 2.1e-83 313.5 339 53.7
Peaxi162Scf00641g00039 Petunia axillaris HOM05D006072 ORTHO05D007363 3.7e-83 312.8 341 54.5
CAN.G3.7 Capsicum annuum HOM05D006072 ORTHO05D007363 8.2e-83 311.6 335 53.7
TAR622G0191 Trochodendron aralioides HOM05D006072 ORTHO05D007363 2.4e-82 310.1 364 49.5
VMungo0251G2066 Vigna mungo HOM05D006072 ORTHO05D007363 9.0e-82 308.1 353 49.3
SalBow3G0772 Salvia bowleyana HOM05D006072 ORTHO05D007363 1.2e-81 307.8 339 52.2
Glyma.08G139000 Glycine max HOM05D006072 ORTHO05D007363 3.4e-81 306.2 325 52.9
Lj4g0019082 Lotus japonicus HOM05D006072 ORTHO05D007363 5.9e-81 305.4 348 51.4
Psat7g053120 Pisum sativum HOM05D006072 ORTHO05D007363 1.7e-80 303.9 353 50.1
TPR.G2161 Trifolium pratense HOM05D006072 ORTHO05D007363 1.7e-80 303.9 323 52.6
Phvul.002G262300 Phaseolus vulgaris HOM05D006072 ORTHO05D007363 2.9e-80 303.1 385 47.5
Ca_17713_v3 Cicer arietinum L. HOM05D006072 ORTHO05D007363 3.8e-80 302.8 367 48.8
Atru.chr4.239 Acer truncatum HOM05D006072 ORTHO05D007363 5.0e-80 302.4 389 48.3
CSS0004323 Camellia sinensis var. sinensis HOM05D006072 ORTHO05D007363 1.1e-79 301.2 343 53.4
Migut.D00310 Erythranthe guttata HOM05D006072 ORTHO05D007363 1.1e-79 301.2 315 54.0
Ciclev10025690m.g Citrus clementina HOM05D006072 ORTHO05D007363 1.9e-79 300.4 337 49.0
Lalb_Chr07g0184981 Lupinus albus HOM05D006072 ORTHO05D007363 5.5e-79 298.9 370 48.1
Medtr8g091400 Medicago truncatula HOM05D006072 ORTHO05D007363 3.5e-78 296.2 366 48.1
Manes.12G138600 Manihot esculenta HOM05D006072 ORTHO05D007363 4.6e-78 295.8 386 47.2
Glyma.05G181300 Glycine max HOM05D006072 ORTHO05D007363 6.1e-78 295.4 363 47.9
Medtr8g092370 Medicago truncatula HOM05D006072 ORTHO05D007363 1.0e-77 294.7 369 48.8
Medtr8g092700 Medicago truncatula HOM05D006072 ORTHO05D007363 1.0e-77 294.7 369 48.8
QL06p050421 Quercus lobata HOM05D006072 ORTHO05D007363 1.0e-77 294.7 393 46.8
Lalb_Chr12g0203671 Lupinus albus HOM05D006072 ORTHO05D007363 3.0e-77 293.1 342 47.4
Cpa.g.sc131.23 Carica papaya HOM05D006072 ORTHO05D007363 1.5e-76 290.8 327 49.8
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 1.9e-76 290.4 265 53.6
Actinidia12426 Actinidia chinensis HOM05D006072 ORTHO05D007363 2.5e-76 290.0 355 49.9
Medtr4g075230 Medicago truncatula HOM05D006072 ORTHO05D007363 2.5e-76 290.0 365 47.4
Potri.005G079500 Populus trichocarpa HOM05D006072 ORTHO05D007363 9.7e-76 288.1 422 43.4
Gorai.007G241900 Gossypium raimondii HOM05D006072 ORTHO05D007363 4.8e-75 285.8 379 45.9
Gohir.D11G224600 Gossypium hirsutum HOM05D006072 ORTHO05D007363 8.2e-75 285.0 379 45.6
DCAR_023269 Daucus carota HOM05D006072 ORTHO05D007363 1.1e-74 284.6 365 48.2
Duzib147G1157 Durio zibethinus HOM05D006072 ORTHO05D007363 1.8e-74 283.9 345 45.5
Gohir.A11G199500 Gossypium hirsutum HOM05D006072 ORTHO05D007363 2.4e-74 283.5 379 45.1
CiPaw.03G138500 Carya illinoinensis HOM05D006072 ORTHO05D007363 3.1e-74 283.1 377 46.2
Lsat_1_v5_gn_3_92501 Lactuca sativa HOM05D006072 ORTHO05D007363 5.3e-74 282.3 366 47.0
Thecc.01G107000 Theobroma cacao HOM05D006072 ORTHO05D007363 4.5e-73 279.3 397 43.8
Ah.09g224330 Amaranthus hybridus HOM05D006072 ORTHO05D007363 1.0e-72 278.1 358 45.3
Haze_24990 Corylus avellana HOM05D006072 ORTHO05D007363 1.0e-72 278.1 372 45.2
ECA246G2885 Erigeron canadensis HOM05D006072 ORTHO05D007363 1.0e-72 278.1 374 44.7
MBI19_g02922_MAGBIO Magnolia biondii HOM05D006072 ORTHO05D007363 1.7e-72 277.3 356 48.9
AUR62015493 Chenopodium quinoa HOM05D006072 ORTHO05D007363 2.9e-72 276.6 256 53.1
Eucgr.H00590 Eucalyptus grandis HOM05D006072 ORTHO05D007363 2.9e-72 276.6 303 49.5
Sabra07G0072700 Salix brachista HOM05D006072 ORTHO05D007363 2.9e-72 276.6 392 44.1
Duzib187G0709 Durio zibethinus HOM05D006072 ORTHO05D007363 8.5e-72 275.0 331 47.4
Rhsim09G0083400 Rhododendron simsii HOM05D006072 ORTHO05D007363 8.5e-72 275.0 381 47.2
Cfa002714 Carpinus fangiana HOM05D006072 ORTHO05D007363 1.9e-71 273.9 357 45.1
Gohir.D12G095100 Gossypium hirsutum HOM05D006072 ORTHO05D007363 1.9e-71 273.9 400 43.8
Ah.14g079100 Amaranthus hybridus HOM05D006072 ORTHO05D007363 2.5e-71 273.5 369 43.4
Gohir.A12G093200 Gossypium hirsutum HOM05D006072 ORTHO05D007363 7.2e-71 271.9 340 47.6
Dinv16779 Davidia involucrata HOM05D006072 ORTHO05D007363 1.0e-69 268.1 376 47.3
Gorai.008G103500 Gossypium raimondii HOM05D006072 ORTHO05D007363 1.0e-69 268.1 375 45.3
PGR083G2817 Punica granatum HOM05D006072 ORTHO05D007363 2.8e-67 260.0 359 43.5
Ah.14g079240 Amaranthus hybridus HOM05D006072 ORTHO05D007363 1.1e-66 258.1 350 41.7
Lsat_1_v5_gn_5_36701 Lactuca sativa HOM05D006072 ORTHO05D007363 5.9e-65 252.3 354 45.8
AUR62003481 Chenopodium quinoa HOM05D006072 ORTHO05D007363 2.9e-64 250.0 233 51.1
CANSAT01G0770 Cannabis sativa HOM05D006072 ORTHO05D007363 6.5e-64 248.8 373 42.1
ATR0598G294 Amborella trichopoda HOM05D006072 ORTHO05D007363 1.4e-53 214.5 331 40.5
ATR0598G256 Amborella trichopoda HOM05D006072 ORTHO05D007363 8.8e-53 211.8 337 41.2
PGR083G1472 Punica granatum HOM05D006072 ORTHO05D007363 8.2e-51 205.3 338 40.2
Dinv12556 Davidia involucrata HOM05D006072 ORTHO05D007363 2.4e-50 203.8 177 59.3
ATR0598G249 Amborella trichopoda HOM05D006072 ORTHO05D007363 5.3e-50 202.6 392 37.0
Ca_20317_v3 Cicer arietinum L. HOM05D006072 ORTHO05D007363 1.1e-47 194.9 344 41.0
SGA_v2.0_scaffold138G35329 Striga asiatica HOM05D000358 ORTHO05D007363 1.4e-45 188.0 168 58.3
ATR0598G193 Amborella trichopoda HOM05D006072 ORTHO05D007363 2.4e-42 177.2 406 32.3
Hma1.2p1_0281F.1_g113250 Hydrangea macrophylla HOM05D006072 ORTHO05D007363 7.7e-41 172.2 312 40.4
AUR62017790 Chenopodium quinoa HOM05D006072 ORTHO05D007363 1.5e-39 167.9 191 44.0
Os02g0491300 Oryza sativa ssp. japonica HOM05D006072 ORTHO05D007363 5.7e-36 156.0 330 34.5
Rhsim09G0083000 Rhododendron simsii HOM05D006072 ORTHO05D007363 8.3e-35 152.1 161 52.2
unitig_0.g119 Utricularia gibba HOM05D006072 ORTHO05D007363 1.1e-31 141.7 184 44.0
Medtr0082s0140 Medicago truncatula HOM05D006072 ORTHO05D007363 1.2e-28 131.7 206 45.1
Solyc09g065320.3 Solanum lycopersicum HOM05D006072 ORTHO05D007363 2.6e-28 130.6 121 54.5
Lalb_Chr10g0094781 Lupinus albus HOM05D006072 ORTHO05D007363 5.7e-28 129.4 119 49.6
arahy.Tifrunner.gnm1.ann1.4ZS2ZJ Arachis hypogaea HOM05D006072 ORTHO05D007363 1.3e-27 128.3 152 50.0
arahy.Tifrunner.gnm1.ann1.UPZ3Q7 Arachis hypogaea HOM05D006072 ORTHO05D007363 1.3e-27 128.3 152 50.0
arahy.Tifrunner.gnm1.ann1.YR9HNH Arachis hypogaea HOM05D006072 ORTHO05D007363 1.3e-27 128.3 152 50.0
Actinidia07224 Actinidia chinensis HOM05D006072 ORTHO05D007363 1.7e-27 127.9 120 60.0
HPP92_004203 Vanilla planifolia HOM05D006072 ORTHO05D007363 2.9e-27 127.1 175 42.3
Dinv20308 Davidia involucrata HOM05D006072 ORTHO05D007363 1.6e-25 121.3 106 66.0
unitig_0.g118 Utricularia gibba HOM05D006072 ORTHO05D007363 9.5e-23 112.1 100 53.0
arahy.Tifrunner.gnm1.ann1.78KFMW Arachis hypogaea HOM05D006072 ORTHO05D007363 6.8e-21 105.9 182 40.7
Rhsim04G0134200 Rhododendron simsii HOM05D001348 ORTHO05D010969 2.6e-20 104.0 124 50.0
Nn2g15226 Nelumbo nucifera HOM05D006072 ORTHO05D007363 7.5e-20 102.4 75 60.0
Peaxi162Scf00003g01433 Petunia axillaris HOM05D005785 ORTHO05D007962 1.4e-18 98.2 95 54.7
arahy.Tifrunner.gnm1.ann1.G5ZNF6 Arachis hypogaea HOM05D006072 ORTHO05D007363 3.2e-18 97.1 118 49.2
arahy.Tifrunner.gnm1.ann1.U641A1 Arachis hypogaea HOM05D006072 ORTHO05D007363 3.2e-18 97.1 118 49.2
arahy.Tifrunner.gnm1.ann1.W4NXZ5 Arachis hypogaea HOM05D006072 ORTHO05D007363 3.2e-18 97.1 118 49.2
DCAR_025007 Daucus carota HOM05D010623 ORTHO05D012718 1.5e-15 88.2 301 25.9
vmacro13591 Vaccinium macrocarpon HOM05D010623 ORTHO05D012718 1.5e-15 88.2 341 27.3
Dinv43969 Davidia involucrata HOM05D010623 ORTHO05D012718 1.9e-15 87.8 256 28.1
Lsat_1_v5_gn_1_2880 Lactuca sativa HOM05D006072 ORTHO05D007363 1.2e-14 85.1 77 55.8
CAN.G1918.1 Capsicum annuum HOM05D010623 ORTHO05D012718 2.1e-14 84.3 265 28.3
Migut.B01424 Erythranthe guttata HOM05D010623 ORTHO05D012718 6.2e-14 82.8 280 26.8
Lj7P559T50 Lonicera japonica HOM05D010623 ORTHO05D012718 1.1e-13 82.0 242 28.5
Cpa.g.sc1.282 Carica papaya HOM05D006072 ORTHO05D007363 2.3e-13 80.9 89 41.6
Rhsim07G0046900 Rhododendron simsii HOM05D010623 ORTHO05D012718 5.2e-13 79.7 283 27.2
Nn1g09223 Nelumbo nucifera HOM05D010623 ORTHO05D012718 8.9e-13 79.0 289 26.0
Oeu060696.1 Olea europaea HOM05D010623 ORTHO05D012718 1.5e-12 78.2 171 29.8
DCAR_023615 Daucus carota HOM05D002727 ORTHO05D002856 1.3e-11 75.1 336 28.0
Actinidia36683 Actinidia chinensis HOM05D002727 ORTHO05D002856 3.7e-11 73.6 331 27.5
Dinv07189 Davidia involucrata HOM05D006072 ORTHO05D007363 8.3e-11 72.4 68 55.9
Medtr1g108470 Medicago truncatula HOM05D002727 ORTHO05D002856 1.1e-10 72.0 251 26.3
Phvul.011G140200 Phaseolus vulgaris HOM05D006072 ORTHO05D007363 1.1e-10 72.0 74 54.1
Ciclev10017676m.g Citrus clementina HOM05D002727 ORTHO05D002856 1.4e-10 71.6 309 28.2
Actinidia15249 Actinidia chinensis HOM05D002727 ORTHO05D002856 2.1e-09 67.8 269 29.0
Lsat_1_v5_gn_1_2900 Lactuca sativa HOM05D006072 ORTHO05D007363 2.1e-09 67.8 128 33.6
Sabra08G0096300 Salix brachista HOM05D002727 ORTHO05D002856 2.7e-09 67.4 262 29.0
Solyc08g044390.1 Solanum lycopersicum HOM05D010623 ORTHO05D012718 3.5e-09 67.0 233 27.0
Lsat_1_v5_gn_2_61421 Lactuca sativa HOM05D006072 ORTHO05D029972 6.0e-09 66.2 114 34.2
AUR62039553 Chenopodium quinoa HOM05D002727 ORTHO05D002856 7.8e-09 65.9 262 28.6
Peaxi162Scf01343g00112 Petunia axillaris HOM05D010623 ORTHO05D012718 1.0e-08 65.5 204 29.4
Sopen08g013570 Solanum pennellii HOM05D010623 ORTHO05D012718 1.0e-08 65.5 230 26.1
Lsat_1_v5_gn_3_54560 Lactuca sativa HOM05D002727 ORTHO05D002856 3.0e-08 63.9 251 27.1
Phvul.007G037300 Phaseolus vulgaris HOM05D002727 ORTHO05D002856 3.0e-08 63.9 293 24.2
Lsat_1_v5_gn_8_43200 Lactuca sativa HOM05D002727 ORTHO05D002856 5.1e-08 63.2 265 24.5
Ah.02g128090 Amaranthus hybridus HOM05D002727 ORTHO05D002856 1.1e-07 62.0 263 27.4
Rhsim02G0252600 Rhododendron simsii HOM05D001862 ORTHO05D002133 1.1e-07 62.0 59 47.5
PGSC0003DMG400025202 Solanum tuberosum HOM05D010623 ORTHO05D012718 1.1e-07 62.0 301 26.2
CsaV3_5G034890 Cucumis sativus L. HOM05D002727 ORTHO05D002856 1.5e-07 61.6 272 25.4
Prupe.1G322000 Prunus persica HOM05D002727 ORTHO05D002856 1.9e-07 61.2 227 28.2
FvH4_7g12190 Fragaria vesca HOM05D002727 ORTHO05D002856 2.5e-07 60.8 303 26.1
FAN24G3357 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.3e-07 60.5 247 26.7
Lsat_1_v5_gn_4_172441 Lactuca sativa HOM05D006072 ORTHO05D007363 3.3e-07 60.5 88 37.5
CSS0022209 Camellia sinensis var. sinensis HOM05D002727 ORTHO05D002856 4.3e-07 60.1 256 29.3
CANSAT01G3036 Cannabis sativa HOM05D002727 ORTHO05D002856 4.3e-07 60.1 311 27.0
MD13G1026900 Malus domestica HOM05D002727 ORTHO05D002856 4.3e-07 60.1 232 31.0
FAN06G2836 Fragaria x ananassa HOM05D002727 ORTHO05D002856 5.6e-07 59.7 286 25.5
FvH4_2g32760 Fragaria vesca HOM05D002727 ORTHO05D002856 7.3e-07 59.3 247 26.7
ClCG05G022230 Citrullus lanatus HOM05D002727 ORTHO05D002856 9.5e-07 58.9 341 25.2
MELO3C012299.2 Cucumis melo HOM05D002727 ORTHO05D002856 9.5e-07 58.9 354 25.4
MD13G1028200 Malus domestica HOM05D002727 ORTHO05D002856 1.2e-06 58.5 236 27.5
CiPaw.06G012900 Carya illinoinensis HOM05D002727 ORTHO05D002856 2.1e-06 57.8 279 28.3
Sed0008746 Sechium edule HOM05D002727 ORTHO05D002856 2.1e-06 57.8 283 27.2
FAN20G2548 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.8e-06 57.4 253 26.5
FAN27G2751 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.8e-06 57.4 213 27.2
HanXRQChr15g0488631 Helianthus annuus HOM05D002727 ORTHO05D002856 2.8e-06 57.4 276 27.2
Potri.008G127500 Populus trichocarpa HOM05D002727 ORTHO05D002856 2.8e-06 57.4 256 28.1
TWI56G0192 Tripterygium wilfordii HOM05D002727 ORTHO05D002856 2.8e-06 57.4 277 28.9
HanXRQChr08g0212641 Helianthus annuus HOM05D002727 ORTHO05D002856 3.6e-06 57.0 264 22.3
Thecc.02G279300 Theobroma cacao HOM05D002727 ORTHO05D002856 3.6e-06 57.0 255 27.1
SGA_v2.0_scaffold98G29380 Striga asiatica HOM05D010623 ORTHO05D012718 4.7e-06 56.6 287 25.8
FAN03G1798 Fragaria x ananassa HOM05D002727 ORTHO05D002856 6.2e-06 56.2 278 25.2
FAN15G1981 Fragaria x ananassa HOM05D002727 ORTHO05D002856 6.2e-06 56.2 253 26.5
PGSC0003DMG400030506 Solanum tuberosum HOM05D002727 ORTHO05D002856 8.1e-06 55.8 270 30.0


User provided reference genes

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