Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.0e-148 530.0 263 100.0
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.9e-131 472.6 257 93.0
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.9e-131 472.6 257 93.0
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 6.7e-108 394.4 257 76.3
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 2.8e-106 389.0 257 75.5
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 8.8e-100 367.5 257 71.6
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 7.7e-96 354.4 259 68.3
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 1.0e-92 344.0 257 65.4
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 1.4e-92 343.6 257 65.4
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 3.0e-92 342.4 257 66.1
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 3.9e-92 342.0 257 66.5
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 5.2e-92 341.7 257 66.1
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 5.2e-92 341.7 257 66.1
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 8.8e-92 340.9 257 65.0
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 1.5e-91 340.1 227 73.1
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 2.0e-91 339.7 257 66.5
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 7.4e-91 337.8 255 66.7
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 7.4e-91 337.8 257 65.0
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 1.3e-90 337.0 257 65.8
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 2.8e-90 335.9 257 64.2
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 1.1e-89 334.0 257 63.8
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 1.2e-88 330.5 257 64.6
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 1.6e-88 330.1 259 62.9
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 2.6e-88 329.3 255 62.0
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 3.5e-88 328.9 257 64.2
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 2.9e-87 325.9 257 60.7
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 1.5e-86 323.6 257 62.3
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 4.2e-86 322.0 258 64.0
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 4.2e-86 322.0 257 63.8
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 2.7e-85 319.3 257 62.3
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 2.7e-85 319.3 242 68.2
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 1.0e-84 317.4 259 61.0
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 1.0e-84 317.4 257 59.9
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 1.4e-84 317.0 257 63.4
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 1.4e-84 317.0 258 60.9
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 1.8e-84 316.6 258 62.0
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 3.0e-84 315.8 257 61.1
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 8.8e-84 314.3 239 62.3
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 3.3e-83 312.4 258 60.1
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 7.5e-83 311.2 258 60.1
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 9.7e-83 310.8 259 61.8
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 1.3e-82 310.5 258 60.5
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 1.7e-82 310.1 258 60.9
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 2.8e-82 309.3 259 59.1
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 3.7e-82 308.9 257 58.4
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 6.3e-82 308.1 255 57.6
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 8.2e-82 307.8 257 59.1
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 1.1e-81 307.4 257 58.0
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 1.1e-81 307.4 258 59.3
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 4.1e-81 305.4 259 61.0
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 3.5e-80 302.4 257 58.0
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 5.9e-80 301.6 258 58.1
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 2.9e-79 299.3 257 56.8
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 2.9e-79 299.3 257 60.7
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 2.9e-79 299.3 259 59.8
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 3.8e-79 298.9 257 57.2
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 1.9e-78 296.6 259 59.1
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 4.2e-78 295.4 258 58.1
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 4.2e-78 295.4 259 56.8
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 4.7e-77 292.0 258 58.1
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 8.0e-77 291.2 226 61.9
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 1.2e-75 287.3 257 56.8
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 3.4e-75 285.8 261 56.7
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 4.4e-75 285.4 240 60.8
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 9.8e-75 284.3 241 58.9
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 9.8e-75 284.3 261 56.3
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 1.7e-74 283.5 259 57.5
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.8e-73 280.0 257 56.0
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 3.1e-73 279.3 257 55.6
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 1.6e-72 276.9 257 54.9
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 2.0e-72 276.6 240 57.5
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 4.5e-72 275.4 258 54.3
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 7.7e-72 274.6 258 55.4
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 1.3e-71 273.9 232 57.8
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 1.6e-69 266.9 237 56.5
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 2.8e-69 266.2 249 55.0
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 3.6e-69 265.8 257 54.1
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 4.7e-69 265.4 257 52.1
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 1.0e-68 264.2 247 54.3
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 2.3e-68 263.1 247 53.8
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 4.0e-68 262.3 249 54.2
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 5.2e-68 261.9 242 55.8
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 5.0e-63 245.4 258 50.8
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 6.6e-63 245.0 239 54.8
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 6.6e-63 245.0 239 54.8
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 1.9e-62 243.4 258 50.0
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 5.6e-62 241.9 259 47.9
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 5.6e-62 241.9 255 50.2
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 1.6e-61 240.4 224 54.9
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 4.7e-61 238.8 255 46.3
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 7.5e-59 231.5 258 50.0
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 2.9e-58 229.6 208 55.8
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 6.0e-56 221.9 268 48.5
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 1.3e-55 220.7 196 59.2
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 2.1e-53 213.4 179 60.9
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 1.2e-51 207.6 242 47.5
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 5.4e-49 198.7 139 74.1
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 9.5e-46 188.0 190 53.2
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 3.1e-44 183.0 154 61.7
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 4.4e-43 179.1 132 65.2
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 1.3e-42 177.6 255 38.8
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 3.7e-42 176.0 259 39.8
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 1.9e-41 173.7 255 38.8
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 7.1e-41 171.8 144 59.7
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 2.1e-40 170.2 280 39.6
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 4.9e-34 149.1 146 52.7
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 7.1e-33 145.2 155 52.3
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 3.9e-31 139.4 100 65.0
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 3.3e-30 136.3 242 35.5
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 5.6e-30 135.6 115 53.9
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 2.1e-29 133.7 209 37.8
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 2.9e-26 123.2 104 58.7
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 8.4e-26 121.7 172 43.6
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 1.7e-23 114.0 227 37.0
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 9.6e-22 108.2 67 73.1
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 3.1e-20 103.2 146 43.2
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 9.9e-19 98.2 95 49.5
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 6.9e-12 75.5 100 40.0
vmacro05339 Vaccinium macrocarpon HOM05D002030 ORTHO05D007413 1.2e-11 74.7 114 43.9


User provided reference genes

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