Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.1e-272 941.8 479 100.0
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 9.5e-161 570.9 513 63.0
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 2.3e-154 549.7 514 59.3
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 1.7e-149 533.5 510 59.8
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 1.4e-143 513.8 512 57.0
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 6.8e-143 511.5 512 58.2
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 4.9e-133 478.8 460 59.6
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 5.7e-113 412.1 511 47.4
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 1.3e-112 411.0 509 47.5
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 1.8e-106 390.6 515 45.6
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 3.2e-100 369.8 457 47.5
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 9.4e-100 368.2 510 44.1
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 5.3e-95 352.4 534 41.6
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 1.2e-91 341.3 515 41.7
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 4.7e-91 339.3 512 43.6
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 1.7e-85 320.9 539 40.6
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 2.2e-85 320.5 509 41.8
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 5.0e-85 319.3 608 36.3
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 1.1e-84 318.2 503 40.6
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 3.6e-83 313.2 599 39.1
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 4.7e-83 312.8 525 40.8
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 3.7e-80 303.1 473 42.3
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 3.8e-77 293.1 497 39.0
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.1e-76 291.6 642 34.0
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 2.3e-74 283.9 421 43.0
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 5.2e-74 282.7 655 33.6
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 6.8e-74 282.3 537 39.1
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 2.8e-72 276.9 521 37.4
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 4.8e-72 276.2 509 35.8
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 3.1e-71 273.5 513 35.7
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 1.1e-68 265.0 643 32.3
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 1.9e-68 264.2 590 34.2
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 5.5e-68 262.7 293 56.7
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 1.2e-67 261.5 583 33.1
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 2.1e-67 260.8 521 34.9
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 1.8e-66 257.7 516 34.1
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.3e-66 257.3 645 31.8
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 2.3e-66 257.3 583 32.6
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.2e-65 255.0 631 33.0
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 3.4e-65 253.4 646 32.0
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 1.3e-64 251.5 389 40.4
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 1.3e-64 251.5 433 40.0
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 2.8e-64 250.4 513 34.9
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 1.1e-63 248.4 581 33.2
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 7.0e-63 245.7 649 31.3
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.2e-62 245.0 649 31.3
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 1.3e-61 241.5 491 35.8
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.7e-61 241.1 651 31.3
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 6.6e-61 239.2 486 36.8
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 2.5e-60 237.3 427 39.8
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 2.5e-60 237.3 273 49.8
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 5.6e-60 236.1 296 50.0
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 1.0e-58 231.9 433 38.8
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 1.8e-58 231.1 414 39.1
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 5.2e-58 229.6 437 36.8
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 1.2e-57 228.4 484 36.8
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 2.0e-57 227.6 571 33.8
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 7.5e-57 225.7 239 49.8
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 9.8e-57 225.3 429 37.1
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 9.8e-57 225.3 417 39.3
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 1.7e-56 224.6 607 32.1
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 4.9e-56 223.0 334 41.9
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 8.3e-56 222.2 425 37.9
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 1.1e-55 221.9 715 28.1
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 1.8e-55 221.1 374 41.2
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 7.0e-55 219.2 398 39.2
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 9.2e-55 218.8 422 37.9
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 7.8e-54 215.7 447 37.6
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 1.5e-52 211.5 565 33.6
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 1.5e-52 211.5 469 35.0
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 7.3e-52 209.1 490 35.1
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 2.1e-51 207.6 486 33.1
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 2.8e-51 207.2 523 34.2
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 8.0e-51 205.7 623 32.1
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 8.0e-51 205.7 381 36.2
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 2.3e-50 204.1 318 42.1
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 2.3e-50 204.1 313 42.8
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 1.5e-49 201.4 303 43.6
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 5.4e-47 193.0 240 43.3
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 4.6e-46 189.9 342 38.0
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.0e-45 188.7 627 30.5
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 5.0e-45 186.4 378 34.9
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 6.6e-45 186.0 362 38.7
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 6.6e-45 186.0 362 38.7
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 1.5e-44 184.9 345 37.7
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 2.3e-42 177.6 714 27.5
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 2.6e-41 174.1 677 26.3
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 2.9e-40 170.6 492 30.5
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 3.7e-40 170.2 506 29.6
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 4.9e-40 169.9 688 25.6
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 2.1e-38 164.5 251 41.8
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 3.5e-38 163.7 731 26.1
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 3.0e-37 160.6 465 33.1
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 3.9e-37 160.2 693 25.1
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 1.5e-36 158.3 488 32.6
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 1.9e-36 157.9 693 25.7
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 4.7e-35 153.3 664 25.5
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 6.2e-35 152.9 539 27.6
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 5.2e-34 149.8 681 26.3
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 8.9e-34 149.1 708 25.0
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 1.2e-33 148.7 669 25.3
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 2.0e-33 147.9 687 26.5
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 5.8e-33 146.4 499 28.3
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 7.6e-33 146.0 377 30.5
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 9.9e-33 145.6 669 25.1
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 2.2e-32 144.4 698 25.1
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 2.2e-32 144.4 378 33.3
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 3.8e-32 143.7 681 25.8
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 1.4e-31 141.7 446 29.4
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 5.4e-31 139.8 712 25.8
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 5.4e-31 139.8 387 31.8
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 4.6e-30 136.7 415 30.8
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 6.0e-30 136.3 245 36.3
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 1.1e-28 132.1 226 37.6
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 9.6e-28 129.0 527 28.1
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.4e-26 125.2 149 42.3
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.8e-26 124.8 284 33.5
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 4.0e-26 123.6 716 24.2
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 4.0e-26 123.6 110 52.7
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 1.9e-23 114.8 392 29.6
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 2.1e-22 111.3 104 57.7
Lj1A781G48 Lonicera japonica HOM05D005385 ORTHO05D006768 5.6e-20 103.2 107 54.2
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 1.1e-18 99.0 107 49.5
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 5.8e-17 93.2 248 30.2
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 4.6e-14 83.6 170 35.9
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 7.9e-14 82.8 151 37.1
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 8.7e-13 79.3 340 27.4
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.5e-12 78.6 340 27.9
ATR0580G041 Amborella trichopoda HOM05D005385 ORTHO05D006768 2.0e-09 68.2 513 23.2
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 7.6e-09 66.2 94 41.5
SEGI_06248 Sequoiadendron giganteum HOM05D005385 ORTHO05D004652 6.0e-06 56.6 98 34.7


User provided reference genes

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