Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.2e-285 984.9 502 100.0
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 8.4e-176 620.9 514 65.2
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 4.2e-175 618.6 515 65.2
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 5.4e-175 618.2 515 65.8
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 3.7e-171 605.5 514 64.8
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.0e-160 570.9 513 63.0
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 1.0e-157 560.8 460 65.9
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 1.8e-130 470.3 517 53.0
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 5.3e-130 468.8 516 53.1
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 4.5e-121 439.1 516 48.8
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.6e-116 423.3 318 74.2
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 2.9e-112 409.8 516 46.9
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 1.2e-110 404.4 459 49.0
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 1.4e-109 401.0 514 47.5
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 5.7e-108 395.6 539 44.9
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 1.6e-102 377.5 612 40.2
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 2.1e-102 377.1 538 45.0
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 1.8e-101 374.0 511 45.8
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 4.0e-101 372.9 529 44.6
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 1.9e-98 364.0 515 44.7
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 7.0e-98 362.1 644 38.5
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 1.8e-93 347.4 603 39.1
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 2.3e-93 347.1 646 36.7
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 3.4e-92 343.2 508 42.3
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 2.9e-91 340.1 633 39.2
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 6.4e-91 339.0 630 36.8
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 1.1e-90 338.2 583 37.9
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 5.4e-90 335.9 582 37.3
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 1.6e-89 334.3 474 44.3
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 6.0e-89 332.4 658 37.7
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 7.8e-89 332.0 582 36.9
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 3.0e-88 330.1 501 41.7
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 8.6e-88 328.6 519 40.7
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.5e-87 327.8 645 36.9
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 9.5e-87 325.1 645 36.7
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 3.1e-85 320.1 525 41.0
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.0e-84 317.4 645 35.0
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 4.4e-84 316.2 642 35.7
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 5.8e-84 315.8 517 40.8
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 9.9e-84 315.1 645 36.3
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 8.3e-83 312.0 535 40.0
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 1.4e-82 311.2 521 40.9
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 9.2e-82 308.5 589 36.0
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 1.9e-79 300.8 544 37.9
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 5.6e-79 299.3 518 38.2
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 2.2e-75 287.3 571 37.1
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.2e-75 287.3 439 40.5
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 6.4e-75 285.8 287 58.5
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 7.1e-74 282.3 397 44.1
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 3.3e-71 273.5 480 39.2
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 1.2e-70 271.6 507 38.5
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 8.1e-70 268.9 480 39.6
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 5.3e-69 266.2 336 49.7
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 1.2e-68 265.0 427 39.8
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 2.0e-68 264.2 484 39.7
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 3.4e-68 263.5 457 40.9
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 1.3e-67 261.5 507 36.7
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 4.9e-67 259.6 618 33.0
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 4.9e-67 259.6 532 38.0
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 1.4e-66 258.1 506 36.4
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 1.4e-66 258.1 438 40.4
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 1.9e-66 257.7 728 31.9
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 3.2e-66 256.9 424 40.1
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 5.4e-66 256.1 493 38.1
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 3.5e-65 253.4 368 46.7
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 3.5e-65 253.4 368 46.7
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.3e-64 251.5 610 34.8
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 6.6e-64 249.2 482 38.8
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 1.1e-63 248.4 714 29.3
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 7.3e-63 245.7 278 50.4
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 7.3e-63 245.7 720 29.4
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 1.3e-62 245.0 404 40.6
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 2.1e-62 244.2 568 34.3
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 2.8e-62 243.8 425 40.7
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 9.0e-61 238.8 451 37.3
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 4.5e-60 236.5 241 51.5
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 4.2e-58 229.9 266 51.5
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 9.3e-58 228.8 320 45.9
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 4.6e-57 226.5 365 42.7
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.8e-56 224.6 458 33.2
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 8.7e-56 222.2 612 33.0
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 1.9e-55 221.1 693 29.1
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 9.6e-55 218.8 687 30.0
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 6.2e-54 216.1 387 39.5
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 6.2e-54 216.1 391 39.1
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 4.2e-50 203.4 726 27.3
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 9.3e-50 202.2 238 42.4
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 2.3e-48 197.6 455 33.8
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 8.7e-48 195.7 730 26.6
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 6.2e-46 189.5 527 31.5
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 3.1e-45 187.2 721 28.6
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 1.2e-44 185.3 388 36.6
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 5.8e-44 183.0 761 25.9
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 1.0e-43 182.2 668 27.7
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 1.3e-43 181.8 284 42.3
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 2.9e-43 180.6 681 27.9
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 3.8e-43 180.3 253 43.9
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 1.1e-42 178.7 696 28.7
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 1.1e-42 178.7 696 29.0
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 2.5e-42 177.6 681 27.8
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 3.2e-42 177.2 692 28.6
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 4.6e-41 173.3 702 28.2
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 1.8e-40 171.4 699 27.8
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 6.7e-40 169.5 549 28.2
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 2.5e-39 167.5 699 27.8
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 3.3e-39 167.2 515 28.9
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 7.4e-39 166.0 698 27.2
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 1.6e-38 164.9 370 34.3
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 9.0e-37 159.1 479 29.0
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 9.0e-37 159.1 376 32.4
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 3.4e-36 157.1 227 41.0
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 7.7e-36 156.0 225 42.7
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 1.3e-35 155.2 719 25.2
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 2.5e-34 151.0 713 25.0
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 8.8e-32 142.5 440 29.8
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.5e-31 141.7 507 28.2
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 4.8e-30 136.7 388 33.5
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 1.1e-29 135.6 279 36.2
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.8e-29 134.8 264 34.5
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 5.3e-29 133.3 110 55.5
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.3e-27 128.6 147 40.8
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 1.1e-23 115.5 171 42.7
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 4.4e-23 113.6 249 34.9
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 7.4e-23 112.8 109 54.1
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.5e-20 105.1 358 31.6
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 3.5e-20 104.0 110 50.0
Lj1A781G48 Lonicera japonica HOM05D005385 ORTHO05D006768 4.5e-20 103.6 110 52.7
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 7.7e-20 102.8 358 31.3
HPP92_018560 Vanilla planifolia HOM05D005385 ORTHO05D006768 1.1e-13 82.4 94 43.6
ATR0580G041 Amborella trichopoda HOM05D005385 ORTHO05D006768 1.3e-11 75.5 501 22.4
Nitab4.5_0004549g0040 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.1e-10 72.4 93 47.3


User provided reference genes

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