Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010985 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 3.0e-90 335.1 163 100.0
CSS0016703 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 2.4e-87 325.5 163 98.2
CSS0048282 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 2.2e-64 249.2 162 79.0
Actinidia33452 Actinidia chinensis HOM05D003518 ORTHO05D005164 1.0e-37 160.6 197 48.2
Dinv43741 Davidia involucrata HOM05D003518 ORTHO05D005164 5.5e-36 154.8 197 47.2
Dinv32408 Davidia involucrata HOM05D003518 ORTHO05D005164 4.7e-35 151.8 196 45.9
vmacro20980 Vaccinium macrocarpon HOM05D003518 ORTHO05D005164 2.0e-33 146.4 127 56.7
Potri.002G151800 Populus trichocarpa HOM05D003518 ORTHO05D005164 1.7e-32 143.3 196 44.9
Rhsim01G0160000 Rhododendron simsii HOM05D003518 ORTHO05D005164 2.8e-32 142.5 196 41.8
Rhsim07G0023000 Rhododendron simsii HOM05D003518 ORTHO05D005164 4.8e-32 141.7 198 44.4
Hma1.2p1_0132F.1_g060640 Hydrangea macrophylla HOM05D003518 ORTHO05D005164 8.3e-32 141.0 196 44.4
GSVIVG01027580001 Vitis vinifera HOM05D003518 ORTHO05D005164 2.0e-30 136.3 196 41.3
Duzib133G1143 Durio zibethinus HOM05D003518 ORTHO05D005164 1.0e-29 134.0 132 50.8
MD02G1197300 Malus domestica HOM05D003518 ORTHO05D005164 8.6e-29 131.0 131 50.4
Cc02_g37010 Coffea canephora HOM05D003518 ORTHO05D005164 1.1e-28 130.6 134 50.0
DCAR_015924 Daucus carota HOM05D003518 ORTHO05D005164 1.1e-28 130.6 203 39.9
Potri.014G074300 Populus trichocarpa HOM05D003518 ORTHO05D005164 1.9e-28 129.8 196 40.8
MD07G1123700 Malus domestica HOM05D003518 ORTHO05D005164 4.2e-28 128.6 131 49.6
QL08p051054 Quercus lobata HOM05D003518 ORTHO05D005164 4.2e-28 128.6 131 50.4
Cpa.g.sc18.167 Carica papaya HOM05D003518 ORTHO05D005164 5.5e-28 128.3 195 39.0
TWI59G1247 Tripterygium wilfordii HOM05D003518 ORTHO05D005164 7.2e-28 127.9 130 50.0
CANSAT56G2265 Cannabis sativa HOM05D003518 ORTHO05D005164 1.2e-27 127.1 130 50.0
CiPaw.01G258000 Carya illinoinensis HOM05D003518 ORTHO05D005164 1.6e-27 126.7 131 48.9
Duzib138G0903 Durio zibethinus HOM05D003518 ORTHO05D005164 2.1e-27 126.3 133 50.4
Prupe.2G151300 Prunus persica HOM05D003518 ORTHO05D005164 2.1e-27 126.3 200 40.5
Atru.chr5.372 Acer truncatum HOM05D003518 ORTHO05D005164 3.6e-27 125.6 126 51.6
Gohir.A12G102800 Gossypium hirsutum HOM05D003518 ORTHO05D005164 3.6e-27 125.6 197 37.6
Manes.01G263400 Manihot esculenta HOM05D003518 ORTHO05D005164 6.1e-27 124.8 131 48.1
Ciclev10019439m.g Citrus clementina HOM05D003518 ORTHO05D005164 8.0e-27 124.4 196 38.3
Sc23g0003400 Simmondsia chinensis HOM05D003518 ORTHO05D005164 8.0e-27 124.4 197 38.6
Gorai.008G115300 Gossypium raimondii HOM05D003518 ORTHO05D005164 1.0e-26 124.0 197 38.6
Ah.05g175810 Amaranthus hybridus HOM05D003518 ORTHO05D005164 1.4e-26 123.6 129 45.7
PGR042G3961 Punica granatum HOM05D003518 ORTHO05D005164 1.8e-26 123.2 184 39.1
TWI14G0835 Tripterygium wilfordii HOM05D003518 ORTHO05D005164 3.0e-26 122.5 130 48.5
Sabra14G0053000 Salix brachista HOM05D003518 ORTHO05D005164 4.0e-26 122.1 117 53.0
FAN10G3707 Fragaria x ananassa HOM05D003518 ORTHO05D005164 5.2e-26 121.7 133 46.6
FvH4_7g12710 Fragaria vesca HOM05D003518 ORTHO05D005164 6.8e-26 121.3 134 45.5
FAN01G1761 Fragaria x ananassa HOM05D003518 ORTHO05D005164 6.8e-26 121.3 134 45.5
FAN06G1131 Fragaria x ananassa HOM05D003518 ORTHO05D005164 6.8e-26 121.3 134 45.5
FAN06G5121 Fragaria x ananassa HOM05D003518 ORTHO05D005164 6.8e-26 121.3 134 45.5
RcHm_v2.0_Chr1g0351731 Rosa chinensis HOM05D003518 ORTHO05D005164 6.8e-26 121.3 133 48.9
Manes.05G041800 Manihot esculenta HOM05D003518 ORTHO05D005164 8.9e-26 120.9 126 47.6
A04p33950 Brassica napus HOM05D003518 ORTHO05D005164 3.4e-25 119.0 133 46.6
BraA04t18856Z Brassica rapa HOM05D003518 ORTHO05D005164 3.4e-25 119.0 133 46.6
DCAR_006891 Daucus carota HOM05D003518 ORTHO05D005164 3.4e-25 119.0 127 47.2
Gohir.D11G088000 Gossypium hirsutum HOM05D003518 ORTHO05D005164 3.4e-25 119.0 132 43.9
Gorai.007G093900 Gossypium raimondii HOM05D003518 ORTHO05D005164 3.4e-25 119.0 132 43.9
THA.LOC104802006 Tarenaya hassleriana HOM05D003518 ORTHO05D005164 3.4e-25 119.0 131 45.8
A03p25290 Brassica napus HOM05D003518 ORTHO05D005164 5.7e-25 118.2 133 45.1
CAN.G170.67 Capsicum annuum HOM05D003518 ORTHO05D005164 7.5e-25 117.9 131 45.8
BraA03t11733Z Brassica rapa HOM05D003518 ORTHO05D005164 9.8e-25 117.5 133 45.1
CiPaw.02G164700 Carya illinoinensis HOM05D003518 ORTHO05D005164 9.8e-25 117.5 131 45.0
AUR62033382 Chenopodium quinoa HOM05D003518 ORTHO05D005164 9.8e-25 117.5 126 46.0
FAN10G3827 Fragaria x ananassa HOM05D003518 ORTHO05D005164 1.3e-24 117.1 133 44.4
Oeu024431.2 Olea europaea HOM05D003518 ORTHO05D005164 1.3e-24 117.1 131 49.6
CARHR140890 Cardamine hirsuta HOM05D003518 ORTHO05D005164 1.7e-24 116.7 130 45.4
Eucgr.E01329 Eucalyptus grandis HOM05D003518 ORTHO05D005164 1.7e-24 116.7 194 38.1
FAN03G3110 Fragaria x ananassa HOM05D003518 ORTHO05D005164 2.2e-24 116.3 134 45.5
PSO782G5439 Papaver somniferum HOM05D003518 ORTHO05D005164 2.2e-24 116.3 195 37.4
EL10Ac1g00954 Beta vulgaris HOM05D003518 ORTHO05D005164 3.7e-24 115.5 182 36.8
BcaB06g29432 Brassica carinata HOM05D003518 ORTHO05D005164 3.7e-24 115.5 196 37.8
BcaC02g07077 Brassica carinata HOM05D003518 ORTHO05D005164 3.7e-24 115.5 133 45.1
C04p71760 Brassica napus HOM05D003518 ORTHO05D005164 3.7e-24 115.5 133 45.1
SGA_v2.0_scaffold153G37052 Striga asiatica HOM05D003518 ORTHO05D005164 3.7e-24 115.5 199 37.2
BcaB01g03262 Brassica carinata HOM05D003518 ORTHO05D005164 4.9e-24 115.2 132 44.7
Nn6g34312 Nelumbo nucifera HOM05D003518 ORTHO05D005164 6.3e-24 114.8 195 36.9
Sabra02G0120000 Salix brachista HOM05D003518 ORTHO05D005164 6.3e-24 114.8 266 32.3
Sopen01g037730 Solanum pennellii HOM05D003518 ORTHO05D005164 6.3e-24 114.8 131 47.3
Haze_16711 Corylus avellana HOM05D003518 ORTHO05D005164 8.3e-24 114.4 126 49.2
PSO478G4904 Papaver somniferum HOM05D003518 ORTHO05D005164 8.3e-24 114.4 195 37.4
Aqoxy7G00493 Aquilegia oxysepala HOM05D003518 ORTHO05D005164 1.4e-23 113.6 199 36.7
BcaC01g05115 Brassica carinata HOM05D003518 ORTHO05D005164 1.8e-23 113.2 131 44.3
C03p30180 Brassica napus HOM05D003518 ORTHO05D005164 1.8e-23 113.2 131 44.3
Solyc01g091950.4 Solanum lycopersicum HOM05D003518 ORTHO05D005164 1.8e-23 113.2 131 46.6
SalBow7G3081 Salvia bowleyana HOM05D003518 ORTHO05D005164 3.2e-23 112.5 196 36.2
AUR62004275 Chenopodium quinoa HOM05D003518 ORTHO05D005164 5.4e-23 111.7 126 44.4
Sp4g27710 Schrenkiella parvula HOM05D003518 ORTHO05D005164 5.4e-23 111.7 133 42.9
Lsat_1_v5_gn_7_6740 Lactuca sativa HOM05D003518 ORTHO05D005164 7.0e-23 111.3 125 50.4
Lj3g0010840 Lotus japonicus HOM05D003518 ORTHO05D005164 7.0e-23 111.3 198 35.9
Ca_23782_v3 Cicer arietinum L. HOM05D003518 ORTHO05D005164 9.2e-23 110.9 198 37.4
BolC3t15366H Brassica oleracea HOM05D003518 ORTHO05D005164 1.2e-22 110.5 131 44.3
Nn1g01294 Nelumbo nucifera HOM05D003518 ORTHO05D005164 1.2e-22 110.5 134 44.0
HanXRQChr04g0122151 Helianthus annuus HOM05D003518 ORTHO05D005164 1.6e-22 110.2 125 48.0
Medtr8g033180 Medicago truncatula HOM05D003518 ORTHO05D005164 1.6e-22 110.2 199 36.2
CSS0039859 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 2.0e-22 109.8 55 92.7
Lalb_Chr17g0340051 Lupinus albus HOM05D003518 ORTHO05D005164 2.0e-22 109.8 126 46.8
BolC4t28675H Brassica oleracea HOM05D003518 ORTHO05D005164 3.5e-22 109.0 133 43.6
Aa31LG1G27140 Aethionema arabicum HOM05D003518 ORTHO05D005164 4.5e-22 108.6 135 42.2
ECA234G2542 Erigeron canadensis HOM05D003518 ORTHO05D005164 7.8e-22 107.8 125 47.2
ECA236G3950 Erigeron canadensis HOM05D003518 ORTHO05D005164 7.8e-22 107.8 125 46.4
Thhalv10001388m.g Eutrema salsugineum HOM05D003518 ORTHO05D005164 1.0e-21 107.5 196 34.7
AL4G44840 Arabidopsis lyrata HOM05D003518 ORTHO05D005164 1.3e-21 107.1 117 47.0
MBI11_g05096_MAGBIO Magnolia biondii HOM05D003518 ORTHO05D005164 2.3e-21 106.3 195 35.4
Lsat_1_v5_gn_4_37220 Lactuca sativa HOM05D003518 ORTHO05D005164 3.9e-21 105.5 126 43.7
Lalb_Chr04g0256591 Lupinus albus HOM05D003518 ORTHO05D005164 5.0e-21 105.1 125 45.6
CSS0037508 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 6.6e-21 104.8 55 89.1
Migut.B01669 Erythranthe guttata HOM05D003518 ORTHO05D005164 6.6e-21 104.8 132 40.2
Carub.0004s2832 Capsella rubella HOM05D003518 ORTHO05D005164 8.6e-21 104.4 122 44.3
Glyma.07G080800 Glycine max HOM05D003518 ORTHO05D005164 1.1e-20 104.0 132 44.7
Glyma.03G019200 Glycine max HOM05D003518 ORTHO05D005164 1.5e-20 103.6 132 44.7
CSS0043694 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 1.9e-20 103.2 55 87.3
MSTRG.20781 Avicennia marina HOM05D003518 ORTHO05D005164 2.5e-20 102.8 117 47.9
HanXRQChr06g0169291 Helianthus annuus HOM05D003518 ORTHO05D005164 4.3e-20 102.1 125 45.6
HanXRQChr16g0523541 Helianthus annuus HOM05D003518 ORTHO05D005164 4.3e-20 102.1 128 43.8
VMungo0331G0661 Vigna mungo HOM05D003518 ORTHO05D005164 4.3e-20 102.1 132 43.9
arahy.Tifrunner.gnm1.ann1.4HY23M Arachis hypogaea HOM05D003518 ORTHO05D005164 5.6e-20 101.7 131 44.3
ClCG05G001980 Citrullus lanatus HOM05D003518 ORTHO05D005164 5.6e-20 101.7 194 35.6
Peaxi162Scf00021g00116 Petunia axillaris HOM05D003518 ORTHO05D005164 5.6e-20 101.7 120 45.8
Hund27333 Selenicereus undatus HOM05D003518 ORTHO05D005164 5.6e-20 101.7 181 36.5
Sed0024132 Sechium edule HOM05D003518 ORTHO05D005164 9.5e-20 100.9 125 44.0
Phvul.010G088200 Phaseolus vulgaris HOM05D003518 ORTHO05D005164 1.2e-19 100.5 132 44.7
arahy.Tifrunner.gnm1.ann1.N1W82K Arachis hypogaea HOM05D003518 ORTHO05D005164 3.6e-19 99.0 117 47.9
MELO3C006158.2 Cucumis melo HOM05D003518 ORTHO05D005164 8.0e-19 97.8 194 33.5
Hund16973 Selenicereus undatus HOM05D003518 ORTHO05D005164 2.3e-18 96.3 195 31.8
CsaV3_3G009390 Cucumis sativus L. HOM05D003518 ORTHO05D005164 3.1e-18 95.9 194 33.0
Sed0008201 Sechium edule HOM05D003518 ORTHO05D005164 3.1e-18 95.9 194 33.5
Nitab4.5_0003182g0050 Nicotiana tabacum HOM05D003518 ORTHO05D005164 2.9e-16 89.4 196 33.7
Nitab4.5_0001127g0040 Nicotiana tabacum HOM05D003518 ORTHO05D005164 3.7e-16 89.0 116 41.4
TAR614G0002 Trochodendron aralioides HOM05D003518 ORTHO05D005164 2.4e-15 86.3 173 37.0
arahy.Tifrunner.gnm1.ann1.I486B7 Arachis hypogaea HOM05D003518 ORTHO05D005164 4.1e-15 85.5 132 38.6
arahy.Tifrunner.gnm1.ann1.UCSC4W Arachis hypogaea HOM05D003518 ORTHO05D005164 5.4e-15 85.1 131 38.9
TAR636G1560 Trochodendron aralioides HOM05D003518 ORTHO05D005164 7.8e-14 81.3 111 41.4
Actinidia27231 Actinidia chinensis HOM05D003518 ORTHO05D026429 1.7e-13 80.1 78 55.1
CSS0002907 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D026429 2.3e-13 79.7 41 80.5
CSS0046424 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D026429 2.3e-13 79.7 41 80.5
CDE06G2129 Ceratophyllum demersum HOM05D003518 ORTHO05D015542 3.9e-13 79.0 78 47.4
Oeu058604.1 Olea europaea HOM05D003518 ORTHO05D005164 1.1e-12 77.4 136 36.0
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 2.5e-12 76.3 134 37.3
SEGI_40964 Sequoiadendron giganteum HOM05D003518 ORTHO05D005164 9.5e-12 74.3 127 33.9
COL.COLO4_12652 Corchorus olitorius HOM05D003518 ORTHO05D005164 3.6e-11 72.4 95 43.2
Zm00001eb272520 Zea mays HOM05D003518 ORTHO05D005164 4.7e-11 72.0 115 33.9
Thecc.01G371200 Theobroma cacao HOM05D003518 ORTHO05D005164 6.2e-11 71.6 95 42.1
HPP92_012965 Vanilla planifolia HOM05D003518 ORTHO05D015542 1.1e-10 70.9 75 45.3
CSS0046664 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D026429 1.8e-10 70.1 42 73.8
CSS0013582 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 2.0e-09 66.6 38 81.6
Gohir.A11G083800 Gossypium hirsutum HOM05D003518 ORTHO05D005164 2.6e-09 66.2 94 38.3
MBI18_g40306_MAGBIO Magnolia biondii HOM05D003518 ORTHO05D015542 7.5e-09 64.7 53 52.8
Os06g0712300 Oryza sativa ssp. japonica HOM05D003518 ORTHO05D005164 3.7e-08 62.4 116 31.9
Psat4g198920 Pisum sativum HOM05D003518 ORTHO05D005164 8.3e-08 61.2 172 31.4
Mapoly0012s0208 Marchantia polymorpha HOM05D003518 ORTHO05D005164 1.4e-07 60.5 131 27.5
Psat3g059680 Pisum sativum HOM05D003518 ORTHO05D022796 7.1e-07 58.2 92 41.3
Mapoly0076s0022 Marchantia polymorpha HOM05D003518 ORTHO05D005164 2.7e-06 56.2 127 26.0


User provided reference genes

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