Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010979 Camellia sinensis var. sinensis HOM05D003364 ORTHO05D003795 1.8e-45 185.7 98 100.0
CSS0048678 Camellia sinensis var. sinensis HOM05D003364 ORTHO05D003795 4.2e-31 137.9 74 97.3
CSS0011074 Camellia sinensis var. sinensis HOM05D003364 ORTHO05D003795 1.2e-30 136.3 126 65.9
Rhsim03G0085800 Rhododendron simsii HOM05D003364 ORTHO05D003795 1.4e-26 122.9 75 85.3
CSS0050150 Camellia sinensis var. sinensis HOM05D003364 ORTHO05D003795 3.5e-25 118.2 74 82.4
Dinv37357 Davidia involucrata HOM05D003364 ORTHO05D003795 8.5e-24 113.6 74 83.8
GSVIVG01033713001 Vitis vinifera HOM05D003364 ORTHO05D003795 2.5e-23 112.1 74 78.4
Dinv35835 Davidia involucrata HOM05D003364 ORTHO05D003795 4.2e-23 111.3 74 82.4
TAR633G2316 Trochodendron aralioides HOM05D003364 ORTHO05D003795 5.5e-23 110.9 74 78.4
Duzib128G0277 Durio zibethinus HOM05D003364 ORTHO05D003795 7.2e-23 110.5 76 76.3
vmacro08805 Vaccinium macrocarpon HOM05D003364 ORTHO05D003795 6.1e-22 107.5 85 69.4
vmacro07356 Vaccinium macrocarpon HOM05D003364 ORTHO05D003795 8.0e-22 107.1 74 78.4
Thecc.05G075500 Theobroma cacao HOM05D003364 ORTHO05D003795 2.3e-21 105.5 74 77.0
Manes.09G048862 Manihot esculenta HOM05D003364 ORTHO05D003795 4.0e-21 104.8 73 75.3
TAR369G0566 Trochodendron aralioides HOM05D003364 ORTHO05D003795 5.2e-21 104.4 74 73.0
Duzib106G1154 Durio zibethinus HOM05D003364 ORTHO05D003795 1.1e-20 103.2 74 73.0
SalBow3G4042 Salvia bowleyana HOM05D003364 ORTHO05D003795 2.0e-20 102.4 75 72.0
QL07p041392 Quercus lobata HOM05D003364 ORTHO05D003795 5.7e-20 100.9 74 73.0
COL.COLO4_22254 Corchorus olitorius HOM05D003364 ORTHO05D003795 2.2e-19 99.0 74 74.3
Nitab4.5_0009839g0030 Nicotiana tabacum HOM05D003364 ORTHO05D003795 2.2e-19 99.0 74 75.7
EL10As10g23959 Beta vulgaris HOM05D003364 ORTHO05D003795 2.8e-19 98.6 85 61.2
CiPaw.10G002500 Carya illinoinensis HOM05D003364 ORTHO05D003795 2.8e-19 98.6 74 71.6
Gohir.D04G106900 Gossypium hirsutum HOM05D003364 ORTHO05D003795 1.1e-18 96.7 74 68.9
Gorai.009G411000 Gossypium raimondii HOM05D003364 ORTHO05D003795 1.1e-18 96.7 74 68.9
Gohir.A04G068400 Gossypium hirsutum HOM05D003364 ORTHO05D003795 1.4e-18 96.3 74 68.9
Cc06_g04780 Coffea canephora HOM05D003364 ORTHO05D003795 1.8e-18 95.9 73 72.6
Manes.08G015900 Manihot esculenta HOM05D003364 ORTHO05D003795 1.8e-18 95.9 75 70.7
QL07p041377 Quercus lobata HOM05D003364 ORTHO05D003795 7.0e-18 94.0 71 71.8
Duzib093G1696 Durio zibethinus HOM05D003364 ORTHO05D003795 9.1e-18 93.6 74 71.6
Gohir.D11G342100 Gossypium hirsutum HOM05D003364 ORTHO05D003795 9.1e-18 93.6 73 71.2
Gorai.007G372100 Gossypium raimondii HOM05D003364 ORTHO05D003795 9.1e-18 93.6 73 71.2
Lj1A203T55 Lonicera japonica HOM05D003364 ORTHO05D003795 1.2e-17 93.2 74 70.3
Lj3A995G63 Lonicera japonica HOM05D003364 ORTHO05D003795 1.2e-17 93.2 74 74.3
Rhsim04G0138800 Rhododendron simsii HOM05D003364 ORTHO05D003795 1.2e-17 93.2 74 67.6
MSTRG.5787 Avicennia marina HOM05D003364 ORTHO05D003795 1.6e-17 92.8 74 68.9
MD12G1102900 Malus domestica HOM05D003364 ORTHO05D003795 1.6e-17 92.8 75 66.7
Nitab4.5_0000725g0070 Nicotiana tabacum HOM05D003364 ORTHO05D003795 1.6e-17 92.8 74 71.6
Oeu031866.1 Olea europaea HOM05D003364 ORTHO05D003795 1.6e-17 92.8 76 69.7
Prupe.7G123000 Prunus persica HOM05D003364 ORTHO05D003795 1.6e-17 92.8 75 66.7
Sc20g0005750 Simmondsia chinensis HOM05D003364 ORTHO05D003795 1.6e-17 92.8 74 64.9
CiPaw.09G005100 Carya illinoinensis HOM05D003364 ORTHO05D003795 3.5e-17 91.7 74 66.2
EL10Ac7g16703 Beta vulgaris HOM05D003364 ORTHO05D003795 4.5e-17 91.3 75 64.0
DCAR_020798 Daucus carota HOM05D003364 ORTHO05D003795 5.9e-17 90.9 76 68.4
MD14G1097000 Malus domestica HOM05D003364 ORTHO05D003795 5.9e-17 90.9 75 66.7
SGA_v2.0_scaffold40G15447 Striga asiatica HOM05D003364 ORTHO05D003795 7.7e-17 90.5 73 65.8
TWI77G0900 Tripterygium wilfordii HOM05D003364 ORTHO05D003795 7.7e-17 90.5 74 67.6
Hund12309 Selenicereus undatus HOM05D003364 ORTHO05D003795 1.0e-16 90.1 75 64.0
Ciclev10009355m.g Citrus clementina HOM05D003364 ORTHO05D003795 2.9e-16 88.6 74 66.2
Oeu045244.1 Olea europaea HOM05D003364 ORTHO05D003795 3.8e-16 88.2 75 69.3
AUR62030232 Chenopodium quinoa HOM05D003364 ORTHO05D003795 5.0e-16 87.8 74 59.5
Haze_19478 Corylus avellana HOM05D003364 ORTHO05D003795 5.0e-16 87.8 74 64.9
TWI74G0085 Tripterygium wilfordii HOM05D003364 ORTHO05D003795 5.0e-16 87.8 74 66.2
Peaxi162Scf00110g00816 Petunia axillaris HOM05D003364 ORTHO05D003795 6.5e-16 87.4 75 66.7
AUR62040195 Chenopodium quinoa HOM05D003364 ORTHO05D003795 1.1e-15 86.7 75 61.3
Hma1.2p1_0970F.1_g242720 Hydrangea macrophylla HOM05D003364 ORTHO05D003795 1.5e-15 86.3 76 69.7
Gohir.A11G323000 Gossypium hirsutum HOM05D003364 ORTHO05D003795 1.9e-15 85.9 73 67.1
Potri.016G097000 Populus trichocarpa HOM05D003364 ORTHO05D003795 1.9e-15 85.9 75 66.7
Potri.006G119200 Populus trichocarpa HOM05D003364 ORTHO05D003795 4.2e-15 84.7 78 67.9
Nn6g35170 Nelumbo nucifera HOM05D003364 ORTHO05D003795 9.4e-15 83.6 78 64.1
AUR62042710 Chenopodium quinoa HOM05D003364 ORTHO05D003795 2.1e-14 82.4 75 60.0
Hma1.2p1_0137F.1_g062430 Hydrangea macrophylla HOM05D003364 ORTHO05D003795 3.6e-14 81.6 74 67.6
ClCG10G019650 Citrullus lanatus HOM05D003364 ORTHO05D003795 6.1e-14 80.9 74 64.9
MELO3C009407.2 Cucumis melo HOM05D003364 ORTHO05D003795 6.1e-14 80.9 74 64.9
CsaV3_3G036470 Cucumis sativus L. HOM05D003364 ORTHO05D003795 6.1e-14 80.9 74 64.9
Nn2g13901 Nelumbo nucifera HOM05D003364 ORTHO05D003795 1.4e-13 79.7 76 65.8
Sc02g0001390 Simmondsia chinensis HOM05D003364 ORTHO05D003795 2.3e-13 79.0 74 60.8
Nitab4.5_0005208g0010 Nicotiana tabacum HOM05D003364 ORTHO05D003795 3.0e-13 78.6 74 63.5
Sed0015688 Sechium edule HOM05D003364 ORTHO05D003795 5.2e-13 77.8 74 62.2
HanXRQChr11g0345961 Helianthus annuus HOM05D003364 ORTHO05D003795 6.8e-13 77.4 71 64.8
Sed0022654 Sechium edule HOM05D003364 ORTHO05D003795 6.8e-13 77.4 74 62.2
Migut.J00474 Erythranthe guttata HOM05D003364 ORTHO05D003795 1.2e-12 76.6 74 64.9
DCAR_017656 Daucus carota HOM05D003364 ORTHO05D003795 1.5e-12 76.3 77 63.6
Migut.F01371 Erythranthe guttata HOM05D003364 ORTHO05D003795 1.5e-12 76.3 74 63.5
Migut.J00476 Erythranthe guttata HOM05D003364 ORTHO05D003795 1.5e-12 76.3 74 64.9
Oeu040563.2 Olea europaea HOM05D003364 ORTHO05D003795 2.0e-12 75.9 81 58.0
HanXRQChr01g0019311 Helianthus annuus HOM05D003364 ORTHO05D003795 3.4e-12 75.1 71 64.8
PGSC0003DMG400008590 Solanum tuberosum HOM05D003364 ORTHO05D003795 3.4e-12 75.1 74 60.8
vmacro23001 Vaccinium macrocarpon HOM05D003364 ORTHO05D003795 3.4e-12 75.1 53 79.2
Eucgr.A01593 Eucalyptus grandis HOM05D003364 ORTHO05D003795 5.7e-12 74.3 74 60.8
Cpa.g.sc5.126 Carica papaya HOM05D003364 ORTHO05D003795 9.8e-12 73.6 75 60.0
Zm00001eb006510 Zea mays HOM05D003364 ORTHO05D003795 1.3e-11 73.2 76 64.5
CAN.G729.4 Capsicum annuum HOM05D003364 ORTHO05D003795 6.3e-11 70.9 78 56.4
Peaxi162Scf00146g00018 Petunia axillaris HOM05D003364 ORTHO05D003795 6.3e-11 70.9 71 64.8
Aqoxy2G01564 Aquilegia oxysepala HOM05D003364 ORTHO05D003795 8.3e-11 70.5 76 60.5
Solyc10g085810.2 Solanum lycopersicum HOM05D003364 ORTHO05D003795 1.1e-10 70.1 74 59.5
Sopen10g035210 Solanum pennellii HOM05D003364 ORTHO05D003795 1.1e-10 70.1 74 59.5
Solyc10g083780.1 Solanum lycopersicum HOM05D003364 ORTHO05D003795 1.4e-10 69.7 71 63.4
Sopen10g033230 Solanum pennellii HOM05D003364 ORTHO05D003795 1.4e-10 69.7 71 63.4
unitig_22.g5108 Utricularia gibba HOM05D003364 ORTHO05D003795 1.8e-10 69.3 77 55.8
CAN.G541.25 Capsicum annuum HOM05D003364 ORTHO05D003795 3.1e-10 68.6 69 63.8
PGSC0003DMG400028179 Solanum tuberosum HOM05D003364 ORTHO05D003795 5.4e-10 67.8 72 61.1
MBI11_g29030_MAGBIO Magnolia biondii HOM05D003364 ORTHO05D003795 9.1e-10 67.0 78 60.3
VMungo1383G1043 Vigna mungo HOM05D003364 ORTHO05D003795 1.2e-09 66.6 74 59.5
Sabra06G0093800 Salix brachista HOM05D003364 ORTHO05D003795 1.6e-09 66.2 77 54.5
Actinidia32470 Actinidia chinensis HOM05D003364 ORTHO05D003795 2.7e-09 65.5 74 51.4
ECA248G1326 Erigeron canadensis HOM05D003364 ORTHO05D003795 2.7e-09 65.5 74 56.8
Glyma.03G188100 Glycine max HOM05D003364 ORTHO05D003795 3.5e-09 65.1 74 56.8
Glyma.19G188300 Glycine max HOM05D003364 ORTHO05D003795 3.5e-09 65.1 74 56.8
Aqoxy5G02878 Aquilegia oxysepala HOM05D003364 ORTHO05D003795 4.5e-09 64.7 78 59.0
Phvul.001G183500 Phaseolus vulgaris HOM05D003364 ORTHO05D003795 4.5e-09 64.7 74 56.8
PGR142G3973 Punica granatum HOM05D003364 ORTHO05D003795 7.7e-09 63.9 74 54.1
arahy.Tifrunner.gnm1.ann1.PZQ5IT Arachis hypogaea HOM05D003364 ORTHO05D003795 1.7e-08 62.8 74 54.1
arahy.Tifrunner.gnm1.ann1.URL2CG Arachis hypogaea HOM05D003364 ORTHO05D003795 1.7e-08 62.8 74 54.1
RcHm_v2.0_Chr3g0471291 Rosa chinensis HOM05D003364 ORTHO05D003795 2.2e-08 62.4 74 55.4
THA.LOC104818582 Tarenaya hassleriana HOM05D003364 ORTHO05D003795 6.5e-08 60.8 74 51.4
Sabra16G0100200 Salix brachista HOM05D003364 ORTHO05D003795 1.1e-07 60.1 75 54.7
Ah.09g232710 Amaranthus hybridus HOM05D000736 ORTHO05D007313 2.5e-07 58.9 74 51.4
Glyma.20G077501 Glycine max HOM05D003364 ORTHO05D003795 2.5e-07 58.9 74 52.7
Lalb_Chr02g0155361 Lupinus albus HOM05D003364 ORTHO05D003795 3.2e-07 58.5 82 51.2
Aa31LG10G8290 Aethionema arabicum HOM05D003364 ORTHO05D003795 1.2e-06 56.6 74 48.6
unitig_8.g4120 Utricularia gibba HOM05D003364 ORTHO05D003795 1.2e-06 56.6 59 52.5
FvH4_6g17210 Fragaria vesca HOM05D003364 ORTHO05D003795 2.7e-06 55.5 76 55.3
FAN14G4580 Fragaria x ananassa HOM05D003364 ORTHO05D003795 2.7e-06 55.5 76 55.3
Lsat_1_v5_gn_2_100520 Lactuca sativa HOM05D003364 ORTHO05D003795 2.7e-06 55.5 78 53.8
FAN02G0897 Fragaria x ananassa HOM05D003364 ORTHO05D003795 3.6e-06 55.1 76 53.9
Thhalv10017224m.g Eutrema salsugineum HOM05D003364 ORTHO05D003795 8.0e-06 53.9 75 49.3
Os03g0572300 Oryza sativa ssp. japonica HOM05D003364 ORTHO05D003795 8.0e-06 53.9 74 52.7
Psat3g038040 Pisum sativum HOM05D003364 ORTHO05D003795 8.0e-06 53.9 74 48.6


User provided reference genes

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