Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 2310.8 1191 100.0
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1933.3 1181 83.8
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1931.0 1182 84.0
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1904.4 1182 82.9
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1830.8 1183 79.5
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1816.6 1186 77.9
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1779.6 1198 76.6
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1777.3 1180 77.5
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1763.4 1193 76.4
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1758.8 1180 76.4
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1755.0 1180 76.9
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1752.6 1150 78.6
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1751.1 1198 75.5
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1750.7 1176 76.5
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1741.5 1179 75.8
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1738.8 1182 75.9
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1722.6 1178 76.3
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1720.3 1180 74.9
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1718.7 1181 73.8
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1717.2 1178 75.0
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1716.0 1182 75.0
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1715.3 1198 74.6
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1714.5 1204 73.7
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1712.6 1186 74.7
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1709.5 1201 74.1
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1707.2 1175 75.2
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1704.9 1183 74.1
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1704.1 1182 74.1
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1702.6 1182 74.7
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1699.5 1176 74.0
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1686.0 1182 74.4
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1685.6 1181 71.8
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1684.8 1186 73.2
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1684.5 1186 73.2
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1679.8 1186 72.9
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1677.1 1180 73.6
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1675.6 1186 72.8
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1673.3 1181 72.7
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1671.4 1186 72.6
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1670.6 1184 72.8
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1668.7 1195 72.1
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1661.7 1196 71.9
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1660.6 1181 71.2
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1659.4 1184 72.0
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1657.1 1182 72.0
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1653.6 1163 72.7
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1644.0 1177 72.0
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1634.0 1189 71.0
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1630.5 1182 70.5
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1627.5 1175 71.8
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1627.1 1186 70.5
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1621.7 1181 70.3
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1618.2 1176 71.3
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1610.5 1192 69.1
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1609.3 1182 71.9
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1605.9 1178 69.5
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1599.7 1265 68.7
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1598.9 1201 68.9
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1595.5 1194 68.3
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1595.1 1177 69.2
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1592.0 1184 69.4
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1585.5 1186 68.6
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1579.7 1182 68.8
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1578.9 1179 68.4
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1576.6 1184 69.2
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1574.3 1173 69.7
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1563.1 1185 68.6
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1560.8 1180 67.7
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1560.4 1169 68.3
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1559.7 1172 69.2
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1558.5 1180 67.6
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1557.7 1177 67.9
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1557.3 1198 66.9
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1556.2 1176 68.9
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1552.7 1178 67.7
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1552.7 1141 70.1
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1551.6 1183 68.1
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1550.4 1178 67.7
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1547.7 1177 67.5
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1547.7 1184 68.4
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1547.7 1176 68.6
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1541.9 1236 66.2
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1533.1 1198 66.1
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1531.2 1120 70.0
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1527.3 1182 67.3
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1517.7 1180 67.2
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1516.9 1178 69.0
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1515.7 1188 66.4
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1513.4 1179 66.2
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1498.0 993 78.5
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1482.6 1180 66.0
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1455.7 1203 64.1
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1419.4 1115 66.7
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1412.5 1018 71.3
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1394.0 1175 61.7
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1385.5 1178 60.6
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1384.8 1110 64.6
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1365.1 1176 62.6
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1349.3 1159 61.0
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1330.9 1197 59.6
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1269.2 1017 66.7
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1189.5 826 74.5
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1182.9 963 66.5
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1171.0 889 67.4
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 0.0e+00 1085.9 809 71.1
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 1.4e-306 1056.6 1148 52.8
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 4.3e-263 912.1 653 72.7
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 2.2e-259 899.8 1222 43.5
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.2e-259 899.8 1217 43.0
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 6.1e-257 891.7 1218 42.6
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 1.0e-248 864.4 1189 43.9
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 2.0e-247 860.1 551 81.3
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 9.4e-242 841.3 1159 43.7
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.3e-238 830.9 1159 43.2
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 1.5e-236 823.9 1177 42.9
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 6.7e-232 808.5 1199 39.6
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 5.2e-224 782.3 992 47.2
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.6e-220 770.8 787 53.4
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 1.8e-200 704.1 1194 37.0
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.3e-195 688.0 628 57.0
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 5.2e-184 649.4 571 61.3
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 1.4e-181 641.3 471 72.0
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 7.3e-170 602.4 540 59.8
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 4.2e-157 560.1 429 68.8
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.4e-152 544.3 486 58.0
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 1.7e-118 431.8 294 76.2
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 9.8e-106 389.4 269 75.8
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 5.0e-78 297.4 1367 23.3
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 2.1e-76 292.0 209 72.2
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 8.6e-70 270.0 210 69.0
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.9e-69 268.9 263 53.6
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 1.4e-64 252.7 169 78.1
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.5e-53 216.1 109 100.0
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 9.6e-53 213.4 217 56.2
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.1e-43 183.3 428 32.5
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.0e-38 166.8 455 30.1
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 1.2e-26 126.7 96 70.8
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 1.5e-21 109.8 73 74.0
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 3.4e-18 98.6 338 27.2
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 7.2e-16 90.9 650 20.0
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 1.8e-14 86.3 94 50.0
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 1.8e-14 86.3 73 61.6
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 2.0e-13 82.8 79 51.9
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 2.6e-13 82.4 61 67.2
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 6.3e-12 77.8 50 80.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 6.3e-12 77.8 50 80.0
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 1.4e-11 76.6 172 37.2
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.8e-11 76.3 76 47.4
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 3.1e-11 75.5 70 58.6
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 1.2e-10 73.6 69 53.6
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 2.2e-09 69.3 76 50.0
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 6.5e-09 67.8 76 48.7
Sabra13G0031800 Salix brachista HOM05D004384 ORTHO05D037489 4.2e-08 65.1 108 39.8
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 7.2e-08 64.3 62 53.2
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 9.4e-08 63.9 182 26.9
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 1.2e-07 63.5 268 26.1
Sabra13G0031100 Salix brachista HOM05D004384 ORTHO05D037489 1.2e-07 63.5 86 46.5
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 1.0e-06 60.5 62 51.6
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 5.2e-06 58.2 48 60.4


User provided reference genes

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