Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010891 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 7.1e-60 233.8 124 100.0
CSS0043065 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 9.0e-55 216.9 116 98.3
CSS0003205 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 5.9e-38 161.0 122 74.6
CSS0033680 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 5.9e-38 161.0 122 74.6
Actinidia36818 Actinidia chinensis HOM05D005391 ORTHO05D006694 2.3e-34 149.1 114 75.4
vmacro16727 Vaccinium macrocarpon HOM05D005391 ORTHO05D006694 6.7e-34 147.5 120 70.0
Actinidia08882 Actinidia chinensis HOM05D005391 ORTHO05D006694 1.1e-33 146.7 114 71.1
Rhsim12G0176000 Rhododendron simsii HOM05D005391 ORTHO05D006694 3.3e-33 145.2 119 69.7
Lsat_1_v5_gn_4_81240 Lactuca sativa HOM05D005391 ORTHO05D006694 2.2e-32 142.5 127 66.9
Dinv23158 Davidia involucrata HOM05D005391 ORTHO05D006694 1.6e-30 136.3 121 66.9
Thecc.03G130500 Theobroma cacao HOM05D005391 ORTHO05D006694 1.9e-28 129.4 123 64.2
COL.COLO4_28143 Corchorus olitorius HOM05D005391 ORTHO05D006694 9.4e-28 127.1 121 62.0
Gohir.A07G050600 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.6e-27 126.3 118 63.6
Gohir.D07G055100 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.6e-27 126.3 118 63.6
Gorai.001G058300 Gossypium raimondii HOM05D005391 ORTHO05D006694 2.1e-27 125.9 118 63.6
Lj5A95T81 Lonicera japonica HOM05D005391 ORTHO05D006694 2.7e-27 125.6 122 63.9
Sc04g0000550 Simmondsia chinensis HOM05D005391 ORTHO05D006694 4.7e-27 124.8 117 64.1
CiPaw.11G006200 Carya illinoinensis HOM05D005391 ORTHO05D006694 1.0e-26 123.6 131 60.3
DCAR_016386 Daucus carota HOM05D005391 ORTHO05D006694 1.0e-26 123.6 130 59.2
Nn3g16438 Nelumbo nucifera HOM05D005391 ORTHO05D006694 1.0e-26 123.6 116 61.2
Ah.07g204620 Amaranthus hybridus HOM05D005391 ORTHO05D006694 2.3e-26 122.5 120 61.7
TAR629G0488 Trochodendron aralioides HOM05D005391 ORTHO05D006694 3.0e-26 122.1 116 62.9
AUR62002017 Chenopodium quinoa HOM05D005391 ORTHO05D006694 4.0e-26 121.7 116 62.1
GSVIVG01008565001 Vitis vinifera HOM05D005391 ORTHO05D006694 4.0e-26 121.7 106 66.0
Cpa.g.sc13.100 Carica papaya HOM05D005391 ORTHO05D006694 5.2e-26 121.3 131 62.6
AUR62003784 Chenopodium quinoa HOM05D005391 ORTHO05D006694 8.8e-26 120.6 116 62.1
Ah.03g143420 Amaranthus hybridus HOM05D005391 ORTHO05D006694 1.1e-25 120.2 120 60.8
Nn4g22289 Nelumbo nucifera HOM05D005391 ORTHO05D006694 2.0e-25 119.4 113 61.9
Sed0002904 Sechium edule HOM05D005391 ORTHO05D006694 4.4e-25 118.2 125 58.4
Cc08_g07550 Coffea canephora HOM05D005391 ORTHO05D006694 5.7e-25 117.9 148 52.7
TWI14G1436 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 5.7e-25 117.9 129 57.4
TWI23G0649 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 7.5e-25 117.5 120 58.3
Manes.14G050400 Manihot esculenta HOM05D005391 ORTHO05D006694 1.3e-24 116.7 136 52.9
ECA232G1626 Erigeron canadensis HOM05D005391 ORTHO05D006694 1.7e-24 116.3 130 56.2
MD08G1006700 Malus domestica HOM05D005391 ORTHO05D006694 2.8e-24 115.5 134 57.5
MD15G1005900 Malus domestica HOM05D005391 ORTHO05D006694 2.8e-24 115.5 130 57.7
Potri.012G099200 Populus trichocarpa HOM05D005391 ORTHO05D006694 2.8e-24 115.5 113 61.9
EL10Ac6g15093 Beta vulgaris HOM05D005391 ORTHO05D006694 4.8e-24 114.8 127 55.9
FAN15G0439 Fragaria x ananassa HOM05D005391 ORTHO05D006694 4.8e-24 114.8 128 57.0
Hund08624 Selenicereus undatus HOM05D005391 ORTHO05D006694 4.8e-24 114.8 117 58.1
MBI07_g28244_MAGBIO Magnolia biondii HOM05D005391 ORTHO05D006694 6.3e-24 114.4 115 57.4
Prupe.1G358600 Prunus persica HOM05D005391 ORTHO05D006694 8.2e-24 114.0 128 59.4
Ciclev10032864m.g Citrus clementina HOM05D005391 ORTHO05D006694 1.4e-23 113.2 126 61.1
CiPaw.12G044000 Carya illinoinensis HOM05D005391 ORTHO05D006694 1.8e-23 112.8 133 54.1
Peaxi162Scf00045g01932 Petunia axillaris HOM05D005391 ORTHO05D006694 1.8e-23 112.8 120 57.5
TAR371G0831 Trochodendron aralioides HOM05D005391 ORTHO05D006694 1.8e-23 112.8 110 59.1
PGSC0003DMG400026284 Solanum tuberosum HOM05D005391 ORTHO05D006694 3.1e-23 112.1 135 51.9
FAN20G0870 Fragaria x ananassa HOM05D005391 ORTHO05D006694 4.1e-23 111.7 123 56.9
Potri.015G097800 Populus trichocarpa HOM05D005391 ORTHO05D006694 4.1e-23 111.7 121 57.0
Lj1g0005006 Lotus japonicus HOM05D005391 ORTHO05D006694 1.2e-22 110.2 122 59.0
Sabra12G0072400 Salix brachista HOM05D005391 ORTHO05D006694 1.2e-22 110.2 119 58.0
FvH4_2g37750 Fragaria vesca HOM05D005391 ORTHO05D006694 1.6e-22 109.8 120 53.3
PSO017G3900 Papaver somniferum HOM05D005391 ORTHO05D006694 1.6e-22 109.8 110 60.0
PSO478G3696 Papaver somniferum HOM05D005391 ORTHO05D006694 1.6e-22 109.8 110 60.0
MELO3C026202.2 Cucumis melo HOM05D005391 ORTHO05D006694 2.0e-22 109.4 135 54.1
FAN27G0224 Fragaria x ananassa HOM05D005391 ORTHO05D006694 2.0e-22 109.4 124 54.8
Sabra15G0118500 Salix brachista HOM05D005391 ORTHO05D006694 2.7e-22 109.0 120 53.3
Medtr3g099130 Medicago truncatula HOM05D005391 ORTHO05D006694 5.9e-22 107.8 124 57.3
CsaV3_1G000500 Cucumis sativus L. HOM05D005391 ORTHO05D006694 7.7e-22 107.5 135 53.3
ClCG06G017970 Citrullus lanatus HOM05D005391 ORTHO05D006694 1.3e-21 106.7 139 52.5
A06p30110 Brassica napus HOM05D005391 ORTHO05D006694 2.9e-21 105.5 114 57.9
C03p62960 Brassica napus HOM05D005391 ORTHO05D006694 2.9e-21 105.5 114 57.0
BolC3t18550H Brassica oleracea HOM05D005391 ORTHO05D006694 2.9e-21 105.5 114 57.0
BraA06t25962Z Brassica rapa HOM05D005391 ORTHO05D006694 2.9e-21 105.5 114 57.9
Nitab4.5_0000264g0120 Nicotiana tabacum HOM05D005391 ORTHO05D006694 3.8e-21 105.1 130 53.8
AL8G40540 Arabidopsis lyrata HOM05D005391 ORTHO05D006694 5.0e-21 104.8 114 55.3
CDE04G2377 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 5.0e-21 104.8 115 53.9
A09p08280 Brassica napus HOM05D005391 ORTHO05D006694 6.5e-21 104.4 108 59.3
Atru.chr6.1808 Acer truncatum HOM05D005391 ORTHO05D006694 8.5e-21 104.0 121 56.2
CDE10G0912 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 8.5e-21 104.0 102 56.9
TPR.G14215 Trifolium pratense HOM05D005391 ORTHO05D006694 1.1e-20 103.6 113 54.9
Sp2g26560 Schrenkiella parvula HOM05D005391 ORTHO05D006694 2.5e-20 102.4 116 56.0
BraA09t36478Z Brassica rapa HOM05D005391 ORTHO05D006694 3.2e-20 102.1 108 58.3
CARHR277330 Cardamine hirsuta HOM05D005391 ORTHO05D006694 3.2e-20 102.1 111 55.9
Ca_16053_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 5.5e-20 101.3 111 55.9
Glyma.06G169200 Glycine max HOM05D005391 ORTHO05D006694 5.5e-20 101.3 116 57.8
THA.LOC104798944 Tarenaya hassleriana HOM05D005391 ORTHO05D006694 9.4e-20 100.5 124 54.0
Lalb_Chr23g0273681 Lupinus albus HOM05D005391 ORTHO05D006694 1.2e-19 100.1 124 53.2
Phvul.009G165600 Phaseolus vulgaris HOM05D005391 ORTHO05D006694 1.2e-19 100.1 120 54.2
SGA_v2.0_scaffold169G38603 Striga asiatica HOM05D005391 ORTHO05D006694 1.2e-19 100.1 127 52.0
RcHm_v2.0_Chr6g0303761 Rosa chinensis HOM05D005391 ORTHO05D006694 1.6e-19 99.8 129 51.2
VMungo1309G0665 Vigna mungo HOM05D005391 ORTHO05D006694 2.1e-19 99.4 124 53.2
Duzib205G0229 Durio zibethinus HOM05D005391 ORTHO05D006694 2.7e-19 99.0 125 53.6
Migut.E01449 Erythranthe guttata HOM05D005391 ORTHO05D006694 2.7e-19 99.0 136 48.5
FAN26G2573 Fragaria x ananassa HOM05D005391 ORTHO05D006694 4.7e-19 98.2 119 55.5
Carub.0008s2418 Capsella rubella HOM05D005391 ORTHO05D006694 8.0e-19 97.4 117 53.0
ATR0171G017 Amborella trichopoda HOM05D005391 ORTHO05D006694 1.8e-18 96.3 114 49.1
FAN23G2258 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.8e-18 96.3 119 54.6
Psat5g051960 Pisum sativum HOM05D005391 ORTHO05D006694 1.8e-18 96.3 111 53.2
BcaB04g19920 Brassica carinata HOM05D005391 ORTHO05D006694 2.3e-18 95.9 112 51.8
unitig_32.g10935 Utricularia gibba HOM05D005391 ORTHO05D006694 3.0e-18 95.5 138 47.1
CANSAT80G1472 Cannabis sativa HOM05D005391 ORTHO05D006694 4.0e-18 95.1 140 47.9
Sopen08g002620 Solanum pennellii HOM05D005391 ORTHO05D006694 4.0e-18 95.1 135 46.7
Thhalv10004987m.g Eutrema salsugineum HOM05D005391 ORTHO05D006694 5.2e-18 94.7 117 52.1
Oeu009657.1 Olea europaea HOM05D005391 ORTHO05D006694 5.2e-18 94.7 140 49.3
Solyc08g006670.3 Solanum lycopersicum HOM05D005391 ORTHO05D006694 6.8e-18 94.4 135 45.9
Aa31LG1G18560 Aethionema arabicum HOM05D005391 ORTHO05D006694 8.8e-18 94.0 124 47.6
BcaB02g09758 Brassica carinata HOM05D005391 ORTHO05D006694 2.0e-17 92.8 108 54.6
Glyma.04G196600 Glycine max HOM05D005391 ORTHO05D006694 2.0e-17 92.8 119 50.4
HPP92_023119 Vanilla planifolia HOM05D005391 ORTHO05D006694 2.6e-17 92.4 112 56.2
QL10p002677 Quercus lobata HOM05D005391 ORTHO05D006694 1.7e-16 89.7 131 49.6
Aqoxy3G01572 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 2.8e-16 89.0 108 50.9
Gohir.1Z049409 Gossypium hirsutum HOM05D005391 ORTHO05D006694 6.3e-16 87.8 91 58.2
BolC9t53848H Brassica oleracea HOM05D005391 ORTHO05D006694 8.3e-16 87.4 106 52.8
AT5G63480 Arabidopsis thaliana HOM05D005391 ORTHO05D006694 4.1e-15 85.1 114 49.1
arahy.Tifrunner.gnm1.ann1.S11VKX Arachis hypogaea HOM05D005391 ORTHO05D006694 4.1e-15 85.1 138 44.9
MSTRG.25825 Avicennia marina HOM05D005391 ORTHO05D006694 9.1e-15 84.0 137 43.1
arahy.Tifrunner.gnm1.ann1.3A01UJ Arachis hypogaea HOM05D005391 ORTHO05D006694 1.2e-14 83.6 137 44.5
arahy.Tifrunner.gnm1.ann1.CP8X4X Arachis hypogaea HOM05D005391 ORTHO05D006694 1.2e-14 83.6 137 44.5
arahy.Tifrunner.gnm1.ann1.HT4698 Arachis hypogaea HOM05D005391 ORTHO05D006694 1.2e-14 83.6 137 44.5
BcaC04g23332 Brassica carinata HOM05D005391 ORTHO05D006694 2.7e-14 82.4 106 51.9
C09p09360 Brassica napus HOM05D005391 ORTHO05D006694 2.7e-14 82.4 106 51.9
Cfa018784 Carpinus fangiana HOM05D005391 ORTHO05D006694 4.5e-14 81.6 130 46.9
Haze_07152 Corylus avellana HOM05D005391 ORTHO05D006694 4.5e-14 81.6 130 46.9
SalBow8G3527 Salvia bowleyana HOM05D005391 ORTHO05D006694 2.2e-13 79.3 127 46.5
Zm00001eb421130 Zea mays HOM05D005391 ORTHO05D006694 5.0e-13 78.2 107 49.5
Aqoxy3G00618 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 5.5e-12 74.7 107 45.8
Nitab4.5_0001362g0010 Nicotiana tabacum HOM05D005391 ORTHO05D006694 2.7e-11 72.4 117 41.9
HanXRQChr09g0273301 Helianthus annuus HOM05D005391 ORTHO05D006694 3.6e-11 72.0 81 59.3
SEGI_13536 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 8.0e-11 70.9 103 41.7
SEGI_01116 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 1.0e-10 70.5 112 40.2
Oeu040668.1 Olea europaea HOM05D005391 ORTHO05D006694 1.5e-09 66.6 106 42.5
Zm00001eb085410 Zea mays HOM05D005391 ORTHO05D006694 2.6e-09 65.9 118 39.8
Os04g0388601 Oryza sativa ssp. japonica HOM05D005391 ORTHO05D006694 1.3e-08 63.5 128 36.7
FAN23G0903 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.1e-07 60.5 119 43.7
Mapoly0007s0225 Marchantia polymorpha HOM05D005391 ORTHO05D006694 1.6e-06 56.6 100 39.0
Hund13632 Selenicereus undatus HOM05D005391 ORTHO05D006694 2.7e-06 55.8 104 35.6


User provided reference genes

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