Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010884 Camellia sinensis var. sinensis HOM05D005784 ORTHO05D019705 1.6e-123 446.0 220 100.0
CSS0041482 Camellia sinensis var. sinensis HOM05D005784 ORTHO05D019705 2.4e-87 325.9 220 77.7
CSS0039748 Camellia sinensis var. sinensis HOM05D005784 ORTHO05D019705 5.5e-79 298.1 226 72.6
CSS0010584 Camellia sinensis var. sinensis HOM05D005784 ORTHO05D007803 4.1e-50 202.2 178 65.2
vmacro15092 Vaccinium macrocarpon HOM05D005784 ORTHO05D007803 6.5e-48 194.9 200 57.0
Dinv12073 Davidia involucrata HOM05D005784 ORTHO05D007803 9.4e-47 191.0 181 60.2
Rhsim01G0293700 Rhododendron simsii HOM05D005784 ORTHO05D007803 1.2e-46 190.7 178 60.7
Actinidia25875 Actinidia chinensis HOM05D005784 ORTHO05D007803 3.6e-46 189.1 178 60.7
QL09p037402 Quercus lobata HOM05D005784 ORTHO05D007803 1.4e-45 187.2 178 59.6
MBI18_g03858_MAGBIO Magnolia biondii HOM05D005784 ORTHO05D007803 3.0e-45 186.0 178 60.7
Gohir.A11G105900 Gossypium hirsutum HOM05D005784 ORTHO05D007803 6.7e-45 184.9 171 59.6
Gohir.D11G110800 Gossypium hirsutum HOM05D005784 ORTHO05D007803 6.7e-45 184.9 171 59.6
Gorai.007G118500 Gossypium raimondii HOM05D005784 ORTHO05D007803 6.7e-45 184.9 171 59.6
Duzib138G0454 Durio zibethinus HOM05D005784 ORTHO05D007803 1.5e-44 183.7 178 58.4
arahy.Tifrunner.gnm1.ann1.7C5766 Arachis hypogaea HOM05D005784 ORTHO05D007803 2.0e-44 183.3 181 56.9
arahy.Tifrunner.gnm1.ann1.AZ9DWX Arachis hypogaea HOM05D005784 ORTHO05D007803 2.0e-44 183.3 181 56.9
TAR362G0637 Trochodendron aralioides HOM05D005784 ORTHO05D007803 2.0e-44 183.3 171 59.6
TAR362G1337 Trochodendron aralioides HOM05D005784 ORTHO05D007803 2.0e-44 183.3 171 59.6
GSVIVG01028229001 Vitis vinifera HOM05D005784 ORTHO05D007803 2.0e-44 183.3 181 56.9
Cc01_g21720 Coffea canephora HOM05D005784 ORTHO05D007803 2.6e-44 183.0 178 59.0
Lsat_1_v5_gn_8_167141 Lactuca sativa HOM05D005784 ORTHO05D007803 4.4e-44 182.2 181 57.5
Lj5g0003944 Lotus japonicus HOM05D005784 ORTHO05D007803 4.4e-44 182.2 178 57.9
Phvul.007G208100 Phaseolus vulgaris HOM05D005784 ORTHO05D007803 4.4e-44 182.2 178 59.0
Potri.002G185400 Populus trichocarpa HOM05D005784 ORTHO05D007803 4.4e-44 182.2 174 58.6
PGR042G0128 Punica granatum HOM05D005784 ORTHO05D007803 4.4e-44 182.2 171 58.5
Glyma.02G006500 Glycine max HOM05D005784 ORTHO05D007803 5.7e-44 181.8 181 57.5
Cfa004924 Carpinus fangiana HOM05D000351 ORTHO05D007803 7.5e-44 181.4 178 59.0
CiPaw.08G082400 Carya illinoinensis HOM05D005784 ORTHO05D007803 7.5e-44 181.4 171 58.5
Thecc.01G327300 Theobroma cacao HOM05D005784 ORTHO05D007803 7.5e-44 181.4 178 57.9
Glyma.10G139300 Glycine max HOM05D005784 ORTHO05D007803 1.3e-43 180.6 178 57.9
TWI59G1466 Tripterygium wilfordii HOM05D005784 ORTHO05D007803 1.3e-43 180.6 171 59.6
Haze_05164 Corylus avellana HOM05D005784 ORTHO05D007803 1.7e-43 180.3 178 58.4
Duzib133G0630 Durio zibethinus HOM05D005784 ORTHO05D007803 1.7e-43 180.3 178 57.3
VMungo0720G0010 Vigna mungo HOM05D005784 ORTHO05D007803 1.7e-43 180.3 178 57.9
Atru.chr5.839 Acer truncatum HOM05D005784 ORTHO05D007803 2.2e-43 179.9 178 57.9
Nitab4.5_0008825g0010 Nicotiana tabacum HOM05D005784 ORTHO05D007803 2.8e-43 179.5 171 59.1
COL.COLO4_23104 Corchorus olitorius HOM05D005784 ORTHO05D007803 3.7e-43 179.1 178 57.3
CsaV3_5G036980 Cucumis sativus L. HOM05D005784 ORTHO05D007803 3.7e-43 179.1 178 58.4
HanXRQChr06g0167951 Helianthus annuus HOM05D005784 ORTHO05D007803 3.7e-43 179.1 178 58.4
Manes.05G007100 Manihot esculenta HOM05D005784 ORTHO05D007803 3.7e-43 179.1 178 57.3
Sed0007139 Sechium edule HOM05D005784 ORTHO05D007803 3.7e-43 179.1 178 57.9
DCAR_005710 Daucus carota HOM05D005784 ORTHO05D007803 6.3e-43 178.3 171 57.9
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 8.2e-43 177.9 171 58.5
MD09G1291600 Malus domestica HOM05D005784 ORTHO05D007803 8.2e-43 177.9 178 57.3
TPR.G3030 Trifolium pratense HOM05D005784 ORTHO05D007803 8.2e-43 177.9 178 56.2
Peaxi162Scf00309g00620 Petunia axillaris HOM05D005784 ORTHO05D007803 1.1e-42 177.6 171 59.1
MELO3C026475.2 Cucumis melo HOM05D005784 ORTHO05D007803 1.4e-42 177.2 178 57.9
Solyc01g068640.3 Solanum lycopersicum HOM05D005784 ORTHO05D007803 1.4e-42 177.2 171 59.1
DCAR_002944 Daucus carota HOM05D005784 ORTHO05D007803 1.8e-42 176.8 171 56.7
Nitab4.5_0003092g0090 Nicotiana tabacum HOM05D005784 ORTHO05D007803 1.8e-42 176.8 171 58.5
Sopen01g030570 Solanum pennellii HOM05D005784 ORTHO05D007803 2.4e-42 176.4 171 58.5
Psat6g157920 Pisum sativum HOM05D005784 ORTHO05D007803 3.1e-42 176.0 171 56.7
Aqoxy5G02861 Aquilegia oxysepala HOM05D005784 ORTHO05D007803 5.3e-42 175.3 171 56.7
Sc05g0000040 Simmondsia chinensis HOM05D005784 ORTHO05D007803 9.1e-42 174.5 171 56.1
Ciclev10019335m.g Citrus clementina HOM05D005784 ORTHO05D007803 1.2e-41 174.1 178 55.6
Migut.N00893 Erythranthe guttata HOM05D005784 ORTHO05D007803 1.2e-41 174.1 178 55.6
Ca_10232_v3 Cicer arietinum L. HOM05D005784 ORTHO05D007803 1.6e-41 173.7 178 55.6
Eucgr.A00993 Eucalyptus grandis HOM05D005784 ORTHO05D007803 1.6e-41 173.7 178 55.1
Medtr1g085610 Medicago truncatula HOM05D005784 ORTHO05D007803 1.6e-41 173.7 178 55.1
THA.LOC104815912 Tarenaya hassleriana HOM05D005784 ORTHO05D007803 1.6e-41 173.7 171 56.7
Lalb_Chr06g0167151 Lupinus albus HOM05D005784 ORTHO05D007803 2.0e-41 173.3 178 56.7
SGA_v2.0_scaffold417G51242 Striga asiatica HOM05D005784 ORTHO05D007803 2.0e-41 173.3 178 55.1
EL10Ac1g01825 Beta vulgaris HOM05D005784 ORTHO05D007803 2.7e-41 172.9 171 55.6
PSO357G0013 Papaver somniferum HOM05D005784 ORTHO05D007803 1.0e-40 171.0 171 56.1
CANSAT25G3716 Cannabis sativa HOM05D005784 ORTHO05D007803 1.3e-40 170.6 178 54.5
FvH4_1g26110 Fragaria vesca HOM05D005784 ORTHO05D007803 1.3e-40 170.6 179 55.9
FAN19G2824 Fragaria x ananassa HOM05D005784 ORTHO05D007803 1.3e-40 170.6 179 55.9
RcHm_v2.0_Chr3g0485611 Rosa chinensis HOM05D005784 ORTHO05D007803 1.3e-40 170.6 179 55.9
PSO170G5067 Papaver somniferum HOM05D005784 ORTHO05D007803 1.7e-40 170.2 171 55.6
MSTRG.18053 Avicennia marina HOM05D005784 ORTHO05D007803 2.9e-40 169.5 178 55.1
FAN23G2435 Fragaria x ananassa HOM05D005784 ORTHO05D007803 2.9e-40 169.5 179 55.3
FAN26G0124 Fragaria x ananassa HOM05D005784 ORTHO05D007803 2.9e-40 169.5 179 55.3
Prupe.3G001200 Prunus persica HOM05D005784 ORTHO05D007803 3.8e-40 169.1 178 56.7
Zm00001eb340520 Zea mays HOM05D005784 ORTHO05D007803 3.8e-40 169.1 172 54.1
AUR62043318 Chenopodium quinoa HOM05D005784 ORTHO05D007803 5.0e-40 168.7 178 54.5
HPP92_016969 Vanilla planifolia HOM05D005784 ORTHO05D007803 5.0e-40 168.7 178 53.9
HPP92_017034 Vanilla planifolia HOM05D005784 ORTHO05D007803 5.0e-40 168.7 178 53.9
Lalb_Chr02g0147261 Lupinus albus HOM05D005784 ORTHO05D007803 1.1e-39 167.5 178 55.1
unitig_90.g27449 Utricularia gibba HOM05D001090 ORTHO05D007803 1.5e-39 167.2 171 55.0
Nn4g25319 Nelumbo nucifera HOM05D005784 ORTHO05D007803 5.5e-39 165.2 178 56.7
ATR0693G326 Amborella trichopoda HOM05D005784 ORTHO05D007803 7.2e-39 164.9 171 57.3
CDE09G0629 Ceratophyllum demersum HOM05D005784 ORTHO05D007803 7.2e-39 164.9 172 52.9
SEGI_05697 Sequoiadendron giganteum HOM05D005784 ORTHO05D007803 7.2e-39 164.9 174 55.7
Aa31LG5G1370 Aethionema arabicum HOM05D005784 ORTHO05D007803 4.7e-38 162.2 171 53.8
SHI19972 Sapria himalayana HOM05D005784 ORTHO05D000023 8.0e-38 161.4 187 50.3
Oeu052593.2 Olea europaea HOM05D005784 ORTHO05D007803 3.4e-36 156.0 288 41.0
Mapoly0064s0089 Marchantia polymorpha HOM05D005784 ORTHO05D007803 4.8e-35 152.1 177 47.5
Aqoxy2G02413 Aquilegia oxysepala HOM05D005784 ORTHO05D007803 6.3e-35 151.8 178 50.6
Carub.0006s3555 Capsella rubella HOM05D005784 ORTHO05D007803 5.4e-34 148.7 178 48.9
BcaB01g02124 Brassica carinata HOM05D005784 ORTHO05D007803 9.1e-34 147.9 178 48.9
AL6G51690 Arabidopsis lyrata HOM05D005784 ORTHO05D007803 1.2e-33 147.5 178 48.9
Thhalv10028510m.g Eutrema salsugineum HOM05D005784 ORTHO05D007803 1.2e-33 147.5 178 48.9
BolC9t53062H Brassica oleracea HOM05D005784 ORTHO05D007803 2.0e-33 146.7 178 48.3
A09p01190 Brassica napus HOM05D005784 ORTHO05D007803 2.7e-33 146.4 178 48.3
BraA09t35789Z Brassica rapa HOM05D005784 ORTHO05D007803 2.7e-33 146.4 178 48.3
Sp6g01550 Schrenkiella parvula HOM05D005784 ORTHO05D007803 4.5e-33 145.6 178 48.3
BcaC04g24079 Brassica carinata HOM05D005784 ORTHO05D007803 5.9e-33 145.2 178 48.3
C09p01280 Brassica napus HOM05D005784 ORTHO05D007803 5.9e-33 145.2 178 48.3
AT4G01660 Arabidopsis thaliana HOM05D005784 ORTHO05D007803 1.7e-32 143.7 178 47.8
CARHR250010 Cardamine hirsuta HOM05D005784 ORTHO05D007803 3.8e-32 142.5 178 47.2
Pp3c6_18430 Physcomitrium patens HOM05D005784 ORTHO05D007803 5.0e-32 142.1 177 48.0
SMO146G0128 Selaginella moellendorffii HOM05D005784 ORTHO05D007803 9.5e-31 137.9 177 48.0
AagrBONN_evm.TU.Sc2ySwM_228.4566 Anthoceros agrestis HOM05D005784 ORTHO05D007803 2.1e-30 136.7 177 47.5
Cpa.g.sc57.42 Carica papaya HOM05D005784 ORTHO05D007803 1.0e-29 134.4 85 81.2
ClCG11G000360 Citrullus lanatus HOM05D005784 ORTHO05D007803 4.0e-29 132.5 150 53.3
Migut.N00895 Erythranthe guttata HOM05D005784 ORTHO05D007803 5.9e-25 118.6 160 45.0
FAN28G2925 Fragaria x ananassa HOM05D005784 ORTHO05D007803 5.9e-25 118.6 130 53.8
DCAR_005399 Daucus carota HOM05D005784 ORTHO05D007803 7.3e-23 111.7 144 47.9
MCO09G446 Micromonas commoda HOM05D005784 ORTHO05D007803 6.8e-21 105.1 186 38.2
Cre10.g429800 Chlamydomonas reinhardtii HOM05D005784 ORTHO05D007803 9.8e-20 101.3 202 36.1
AUR62035184 Chenopodium quinoa HOM05D005784 ORTHO05D007803 3.2e-18 96.3 178 39.3
Migut.D00007 Erythranthe guttata HOM05D005784 ORTHO05D007803 9.2e-18 94.7 119 48.7
CAN.G179.27 Capsicum annuum HOM05D005784 ORTHO05D007803 4.6e-17 92.4 122 47.5
Cpa.g.sc57.41 Carica papaya HOM05D005784 ORTHO05D007803 6.6e-16 88.6 52 84.6
Haze_26301 Corylus avellana HOM05D005784 ORTHO05D007803 8.6e-16 88.2 177 32.8
CDE09G1340 Ceratophyllum demersum HOM05D005784 ORTHO05D007803 3.3e-15 86.3 178 35.4
AL1G49210 Arabidopsis lyrata HOM05D005784 ORTHO05D019705 4.0e-13 79.3 70 58.6
Cfa022580 Carpinus fangiana HOM05D005784 ORTHO05D007803 4.0e-13 79.3 179 33.0
AL6G39890 Arabidopsis lyrata HOM05D005784 ORTHO05D019705 5.2e-13 79.0 70 60.0
PRCOL_00004655 Prasinoderma coloniale HOM05D005784 ORTHO05D007803 6.8e-13 78.6 193 30.6
AL2G19490 Arabidopsis lyrata HOM05D005784 ORTHO05D019705 1.2e-12 77.8 70 57.1
CBR_g37217 Chara braunii HOM05D005784 ORTHO05D007803 9.2e-10 68.2 194 29.9
Migut.N00894 Erythranthe guttata HOM05D005784 ORTHO05D007803 8.6e-08 61.6 42 64.3
CiPaw.07G126900 Carya illinoinensis HOM05D005784 ORTHO05D019705 1.6e-06 57.4 34 73.5


User provided reference genes

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