Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010876 Camellia sinensis var. sinensis HOM05D005956 ORTHO05D007197 1.8e-266 922.5 662 100.0
Actinidia21896 Actinidia chinensis HOM05D005956 ORTHO05D007197 2.1e-166 590.1 564 74.8
vmacro18734 Vaccinium macrocarpon HOM05D005956 ORTHO05D007197 8.5e-160 568.2 536 81.3
Rhsim08G0251500 Rhododendron simsii HOM05D005956 ORTHO05D007197 2.5e-159 566.6 556 77.7
Nitab4.5_0000499g0110 Nicotiana tabacum HOM05D005956 ORTHO05D007197 4.2e-143 512.7 546 65.6
PSO170G2336 Papaver somniferum HOM05D005956 ORTHO05D007197 6.1e-142 508.8 560 68.9
CiPaw.01G207000 Carya illinoinensis HOM05D005956 ORTHO05D007197 2.2e-139 500.4 539 64.6
Thecc.06G054100 Theobroma cacao HOM05D005956 ORTHO05D007197 4.9e-139 499.2 536 65.7
Cfa003426 Carpinus fangiana HOM05D005956 ORTHO05D007197 8.3e-139 498.4 557 63.4
Duzib192G0068 Durio zibethinus HOM05D005956 ORTHO05D007197 3.2e-138 496.5 536 64.6
PSO063G0021 Papaver somniferum HOM05D005956 ORTHO05D007197 1.3e-136 491.1 560 68.6
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 2.9e-136 490.0 533 71.9
MD17G1161200 Malus domestica HOM05D005956 ORTHO05D007197 1.2e-134 484.6 539 62.0
TAR636G0827 Trochodendron aralioides HOM05D005956 ORTHO05D007197 8.9e-133 478.4 460 79.6
Manes.14G006900 Manihot esculenta HOM05D005956 ORTHO05D007197 1.9e-130 470.7 554 60.8
RcHm_v2.0_Chr2g0149071 Rosa chinensis HOM05D005956 ORTHO05D007197 4.1e-130 469.5 538 61.9
TWI12G1352 Tripterygium wilfordii HOM05D005956 ORTHO05D007197 4.1e-130 469.5 558 60.8
PGR083G0114 Punica granatum HOM05D005956 ORTHO05D007197 1.2e-129 468.0 559 61.4
CAN.G790.4 Capsicum annuum HOM05D005956 ORTHO05D007197 2.3e-128 463.8 540 63.1
Oeu039938.1 Olea europaea HOM05D005956 ORTHO05D007197 2.3e-128 463.8 555 68.6
Sabra07G0001300 Salix brachista HOM05D005956 ORTHO05D007197 3.9e-128 463.0 528 61.7
QL07p046118 Quercus lobata HOM05D005956 ORTHO05D007197 1.1e-127 461.5 548 60.8
Lsat_1_v5_gn_4_106240 Lactuca sativa HOM05D005956 ORTHO05D007197 4.3e-127 459.5 547 68.6
Atru.chr1.2600 Acer truncatum HOM05D005956 ORTHO05D007197 8.0e-126 455.3 528 63.4
FvH4_6g36600 Fragaria vesca HOM05D005956 ORTHO05D007197 5.2e-125 452.6 544 59.7
Gorai.010G135000 Gossypium raimondii HOM05D005956 ORTHO05D007197 1.2e-124 451.4 543 60.8
Cc07_g21430 Coffea canephora HOM05D005956 ORTHO05D007197 2.0e-124 450.7 544 67.6
Eucgr.J03191 Eucalyptus grandis HOM05D005956 ORTHO05D007197 5.8e-124 449.1 554 59.6
Aa31LG4G2050 Aethionema arabicum HOM05D005956 ORTHO05D007197 6.4e-123 445.7 557 62.3
Sopen03g041770 Solanum pennellii HOM05D005956 ORTHO05D007197 2.4e-122 443.7 556 60.4
Solyc03g124040.3 Solanum lycopersicum HOM05D005956 ORTHO05D007197 3.2e-122 443.4 556 60.3
BraA07t31918Z Brassica rapa HOM05D000309 ORTHO05D007197 2.7e-121 440.3 535 60.4
Cpa.g.sc176.24 Carica papaya HOM05D005956 ORTHO05D007197 2.7e-121 440.3 535 61.5
MELO3C020528.2 Cucumis melo HOM05D005956 ORTHO05D007197 6.0e-121 439.1 588 56.5
Hma1.2p1_1111F.1_g258470 Hydrangea macrophylla HOM05D005956 ORTHO05D007197 1.0e-120 438.3 527 64.3
HanXRQChr15g0497231 Helianthus annuus HOM05D005956 ORTHO05D007197 5.1e-120 436.0 530 67.2
AUR62000122 Chenopodium quinoa HOM05D005956 ORTHO05D007197 8.6e-120 435.3 552 57.6
Haze_16217 Corylus avellana HOM05D005956 ORTHO05D007197 4.3e-119 433.0 739 48.2
Potri.007G001800 Populus trichocarpa HOM05D005956 ORTHO05D007197 7.3e-119 432.2 536 59.0
PGSC0003DMG400009194 Solanum tuberosum HOM05D005956 ORTHO05D007197 4.7e-118 429.5 556 59.5
CANSAT01G3224 Cannabis sativa HOM05D005956 ORTHO05D007197 1.2e-116 424.9 546 57.9
Peaxi162Scf00038g02615 Petunia axillaris HOM05D005956 ORTHO05D007197 3.4e-116 423.3 544 58.6
Migut.D02038 Erythranthe guttata HOM05D005956 ORTHO05D007197 6.4e-115 419.1 541 68.0
Ah.05g168390 Amaranthus hybridus HOM05D005956 ORTHO05D007197 1.9e-114 417.5 547 64.7
ClCG03G000530 Citrullus lanatus HOM05D005956 ORTHO05D007197 1.9e-114 417.5 529 58.8
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 1.9e-114 417.5 553 60.8
EL10Ac7g17213 Beta vulgaris HOM05D005956 ORTHO05D007197 7.1e-114 415.6 543 63.9
SGA_v2.0_scaffold115G32115 Striga asiatica HOM05D005956 ORTHO05D007197 9.2e-114 415.2 576 62.5
Sed0023146 Sechium edule HOM05D005956 ORTHO05D007197 1.6e-113 414.5 528 58.3
arahy.Tifrunner.gnm1.ann1.03KM4I Arachis hypogaea HOM05D005956 ORTHO05D007197 2.1e-113 414.1 540 55.0
arahy.Tifrunner.gnm1.ann1.12WCBU Arachis hypogaea HOM05D005956 ORTHO05D007197 2.1e-113 414.1 540 55.0
FAN02G1317 Fragaria x ananassa HOM05D005956 ORTHO05D007197 3.5e-113 413.3 545 56.9
Ciclev10013933m.g Citrus clementina HOM05D005956 ORTHO05D007197 3.0e-112 410.2 526 59.3
ATR0626G219 Amborella trichopoda HOM05D005956 ORTHO05D007197 3.9e-112 409.8 553 62.2
FAN09G1770 Fragaria x ananassa HOM05D005956 ORTHO05D007197 5.1e-112 409.5 545 56.5
FAN14G1696 Fragaria x ananassa HOM05D005956 ORTHO05D007197 1.9e-111 407.5 544 56.6
arahy.Tifrunner.gnm1.ann1.XHCR8J Arachis hypogaea HOM05D005956 ORTHO05D007197 4.3e-111 406.4 540 54.8
COL.COLO4_25126 Corchorus olitorius HOM05D005956 ORTHO05D007197 7.3e-111 405.6 537 57.0
SGA_v2.0_scaffold69G23343 Striga asiatica HOM05D005956 ORTHO05D007197 7.3e-111 405.6 541 57.7
SalBow8G3086 Salvia bowleyana HOM05D005956 ORTHO05D007197 8.1e-110 402.1 558 63.1
AUR62019303 Chenopodium quinoa HOM05D005956 ORTHO05D007197 2.4e-109 400.6 585 53.2
C06p52830 Brassica napus HOM05D000309 ORTHO05D007197 3.4e-108 396.7 549 59.4
Lj7A719T46 Lonicera japonica HOM05D005956 ORTHO05D007197 3.4e-108 396.7 535 62.2
Sc05g0006980 Simmondsia chinensis HOM05D005956 ORTHO05D007197 1.7e-107 394.4 404 62.9
A07p44100 Brassica napus HOM05D000309 ORTHO05D007197 4.9e-107 392.9 549 59.6
Hund05666 Selenicereus undatus HOM05D005956 ORTHO05D007197 1.1e-106 391.7 538 57.2
Sp5g33970 Schrenkiella parvula HOM05D005956 ORTHO05D007197 2.4e-106 390.6 520 59.4
Carub.0002s2578 Capsella rubella HOM05D005956 ORTHO05D007197 2.7e-105 387.1 535 53.6
CsaV3_1G036410 Cucumis sativus L. HOM05D005956 ORTHO05D007197 2.7e-105 387.1 529 57.3
THA.LOC104812335 Tarenaya hassleriana HOM05D005956 ORTHO05D007197 6.0e-105 386.0 539 63.1
BcaB03g16055 Brassica carinata HOM05D005956 ORTHO05D007197 2.3e-104 384.0 533 59.5
VMungo1080G0145 Vigna mungo HOM05D005956 ORTHO05D007197 6.6e-104 382.5 559 50.3
BcaC08g47440 Brassica carinata HOM05D005956 ORTHO05D007197 1.9e-103 380.9 549 61.4
BolC6t40300H Brassica oleracea HOM05D000163 ORTHO05D000219 4.3e-103 379.8 549 61.2
unitig_578.g15928 Utricularia gibba HOM05D005956 ORTHO05D007197 1.2e-100 371.7 545 52.5
Nn2g12784 Nelumbo nucifera HOM05D005956 ORTHO05D007197 1.5e-100 371.3 537 53.8
Gohir.D06G117400 Gossypium hirsutum HOM05D005956 ORTHO05D007197 9.9e-100 368.6 398 51.5
Aqoxy7G02692 Aquilegia oxysepala HOM05D005956 ORTHO05D007197 6.0e-97 359.4 541 58.8
MBI16_g10330_MAGBIO Magnolia biondii HOM05D005956 ORTHO05D007197 1.3e-96 358.2 549 60.3
Dinv08767 Davidia involucrata HOM05D005956 ORTHO05D007197 5.6e-95 352.8 402 78.6
Prupe.3G025200 Prunus persica HOM05D005956 ORTHO05D007197 8.1e-94 349.0 365 52.9
Glyma.15G000800 Glycine max HOM05D005956 ORTHO05D007197 2.6e-92 344.0 541 50.3
Actinidia24382 Actinidia chinensis HOM05D005956 ORTHO05D007197 9.9e-92 342.0 507 57.4
LjContig00482g0022414 Lotus japonicus HOM05D005956 ORTHO05D007197 6.4e-91 339.3 534 52.2
Zm00001eb000010 Zea mays HOM05D005956 ORTHO05D007197 5.4e-90 336.3 537 57.4
Lalb_Chr24g0392721 Lupinus albus HOM05D005956 ORTHO05D007197 1.6e-89 334.7 535 50.1
AL2G39370 Arabidopsis lyrata HOM05D005956 ORTHO05D007197 7.4e-87 325.9 548 55.1
Thhalv10018313m.g Eutrema salsugineum HOM05D005956 ORTHO05D007197 4.8e-86 323.2 550 55.1
HPP92_000245 Vanilla planifolia HOM05D005956 ORTHO05D007197 1.8e-85 321.2 559 37.4
AT1G78930 Arabidopsis thaliana HOM05D005956 ORTHO05D007197 3.1e-85 320.5 534 54.7
TPR.G21350 Trifolium pratense HOM05D005956 ORTHO05D007197 6.9e-85 319.3 560 47.0
Medtr6g003960 Medicago truncatula HOM05D005956 ORTHO05D007197 4.5e-84 316.6 547 47.5
CDE02G2643 Ceratophyllum demersum HOM05D005956 ORTHO05D007197 8.4e-83 312.4 383 47.5
Phvul.005G185600 Phaseolus vulgaris HOM05D005956 ORTHO05D007197 4.6e-81 306.6 408 42.9
Ca_00996_v3 Cicer arietinum L. HOM05D005956 ORTHO05D007197 3.3e-79 300.4 561 48.1
Atru.chr1.2601 Acer truncatum HOM05D005956 ORTHO05D007197 5.7e-79 299.7 308 55.5
ECA233G3598 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.1e-78 297.7 515 59.0
FvH4_4g20560 Fragaria vesca HOM05D005956 ORTHO05D007197 4.1e-77 293.5 367 46.6
Os09g0560100 Oryza sativa ssp. japonica HOM05D005956 ORTHO05D007197 5.3e-77 293.1 536 55.2
DCAR_030820 Daucus carota HOM05D005956 ORTHO05D007197 2.0e-76 291.2 547 49.2
Psat5g306040 Pisum sativum HOM05D005956 ORTHO05D007197 2.9e-75 287.3 538 46.3
CARHR072540 Cardamine hirsuta HOM05D005956 ORTHO05D007197 2.0e-68 264.6 314 60.5
Zm00001eb320340 Zea mays HOM05D005956 ORTHO05D007197 7.2e-66 256.1 537 52.1
Hma1.2p1_1111F.1_g258480 Hydrangea macrophylla HOM05D005956 ORTHO05D007197 2.3e-64 251.1 279 58.8
MBI16_g37212_MAGBIO Magnolia biondii HOM05D005956 ORTHO05D007197 7.2e-58 229.6 308 58.4
MBI16_g00686_MAGBIO Magnolia biondii HOM05D005956 ORTHO05D007197 5.7e-55 219.9 324 75.6
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 7.7e-52 209.5 287 44.9
Gohir.A06G112700 Gossypium hirsutum HOM05D005956 ORTHO05D007197 1.3e-46 192.2 222 77.5
AagrBONN_evm.TU.Sc2ySwM_368.2861 Anthoceros agrestis HOM05D005956 ORTHO05D007197 6.1e-41 173.3 537 42.1
Mapoly0216s0005 Marchantia polymorpha HOM05D005956 ORTHO05D007197 2.0e-39 168.3 555 45.8
SEGI_03409 Sequoiadendron giganteum HOM05D005956 ORTHO05D007197 7.5e-39 166.4 234 39.7
SEGI_15409 Sequoiadendron giganteum HOM05D005956 ORTHO05D007197 7.5e-39 166.4 234 39.7
MD09G1167300 Malus domestica HOM05D005956 ORTHO05D007197 8.0e-33 146.4 178 47.2
Pp3c18_18510 Physcomitrium patens HOM05D005956 ORTHO05D007197 1.4e-29 135.6 558 30.5
SGA_v2.0_scaffold1097G53840 Striga asiatica HOM05D005956 ORTHO05D007197 9.8e-23 112.8 90 61.1
HPP92_000192 Vanilla planifolia HOM05D005956 ORTHO05D007197 4.9e-22 110.5 180 36.1
Nitab4.5_0005679g0030 Nicotiana tabacum HOM05D005956 ORTHO05D007197 2.4e-21 108.2 81 67.9
Glyma.06G230200 Glycine max HOM05D005956 ORTHO05D007197 2.0e-20 105.1 74 64.9
Nitab4.5_0005679g0020 Nicotiana tabacum HOM05D005956 ORTHO05D007197 4.6e-20 104.0 68 73.5
MD09G1167200 Malus domestica HOM05D005956 ORTHO05D007197 7.8e-20 103.2 105 48.6
Sc05g0006990 Simmondsia chinensis HOM05D005956 ORTHO05D007197 7.8e-20 103.2 66 69.7
Psat0s410g0120 Pisum sativum HOM05D005956 ORTHO05D007197 1.7e-19 102.1 80 61.2
arahy.Tifrunner.gnm1.ann1.X8CU4B Arachis hypogaea HOM05D005956 ORTHO05D007197 3.0e-19 101.3 95 53.7
arahy.Tifrunner.gnm1.ann1.DBZ4H1 Arachis hypogaea HOM05D005956 ORTHO05D007197 3.3e-18 97.8 93 57.0
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 3.3e-18 97.8 75 64.0
CBR_g20999 Chara braunii HOM05D005956 ORTHO05D001299 1.4e-16 92.4 240 28.3
Actinidia38816 Actinidia chinensis HOM05D005956 ORTHO05D007197 5.2e-16 90.5 52 78.8
arahy.Tifrunner.gnm1.ann1.85VD00 Arachis hypogaea HOM05D005956 ORTHO05D007197 1.3e-14 85.9 77 53.2
HanXRQChr04g0125301 Helianthus annuus HOM05D005956 ORTHO05D007197 4.1e-13 80.9 47 76.6
SEGI_36231 Sequoiadendron giganteum HOM05D005956 ORTHO05D007197 4.6e-12 77.4 178 38.8
SGA_v2.0_scaffold69G23347 Striga asiatica HOM05D005956 ORTHO05D007197 4.6e-12 77.4 144 81.9
Glyma.19G019500 Glycine max HOM05D005956 ORTHO05D007197 8.1e-09 66.6 110 34.5
arahy.Tifrunner.gnm1.ann1.X81K0T Arachis hypogaea HOM05D005956 ORTHO05D007197 1.8e-08 65.5 57 56.1
CDE02G0452 Ceratophyllum demersum HOM05D005956 ORTHO05D007197 2.6e-07 61.6 102 39.2
Hma1.2p1_0276F.1_g111320 Hydrangea macrophylla HOM05D002901 ORTHO05D003183 3.4e-07 61.2 57 49.1
MD07G1031000 Malus domestica HOM05D002901 ORTHO05D003183 3.4e-07 61.2 68 45.6
arahy.Tifrunner.gnm1.ann1.ZI8HJG Arachis hypogaea HOM05D005956 ORTHO05D007197 4.4e-07 60.8 62 56.5
VMungo0251G0115 Vigna mungo HOM05D002901 ORTHO05D003183 7.5e-07 60.1 57 50.9
arahy.Tifrunner.gnm1.ann1.HA7VEA Arachis hypogaea HOM05D001631 ORTHO05D003183 9.8e-07 59.7 57 49.1
arahy.Tifrunner.gnm1.ann1.IVXM4E Arachis hypogaea HOM05D002901 ORTHO05D003183 9.8e-07 59.7 57 49.1
Ca_17273_v3 Cicer arietinum L. HOM05D002901 ORTHO05D003183 9.8e-07 59.7 57 49.1
Cfa018219 Carpinus fangiana HOM05D002901 ORTHO05D003183 1.3e-06 59.3 57 49.1
Haze_17884 Corylus avellana HOM05D002901 ORTHO05D003183 1.3e-06 59.3 57 49.1
Lj4g0013449 Lotus japonicus HOM05D002901 ORTHO05D003183 1.7e-06 58.9 57 49.1
TPR.G34335 Trifolium pratense HOM05D002901 ORTHO05D003183 1.7e-06 58.9 57 49.1
Glyma.08G046300 Glycine max HOM05D002901 ORTHO05D003183 2.2e-06 58.5 57 49.1
Medtr1g115415 Medicago truncatula HOM05D002901 ORTHO05D003183 2.2e-06 58.5 57 49.1
Phvul.002G321600 Phaseolus vulgaris HOM05D002901 ORTHO05D003183 2.2e-06 58.5 57 49.1
Prupe.8G049300 Prunus persica HOM05D002901 ORTHO05D003183 2.9e-06 58.2 57 49.1
QL07p030484 Quercus lobata HOM05D002901 ORTHO05D003183 3.7e-06 57.8 57 47.4
QL07p031555 Quercus lobata HOM05D002901 ORTHO05D003183 3.7e-06 57.8 55 49.1
Pp3c5_9520 Physcomitrium patens HOM05D005605 ORTHO05D001299 4.9e-06 57.4 59 42.4
RcHm_v2.0_Chr3g0488701 Rosa chinensis HOM05D002901 ORTHO05D003183 4.9e-06 57.4 57 47.4
ClCG10G013530 Citrullus lanatus HOM05D002901 ORTHO05D003183 6.4e-06 57.0 57 47.4
MELO3C026620.2 Cucumis melo HOM05D002901 ORTHO05D003183 6.4e-06 57.0 57 47.4
CsaV3_3G043110 Cucumis sativus L. HOM05D002901 ORTHO05D003183 6.4e-06 57.0 57 47.4
FAN26G1081 Fragaria x ananassa HOM05D002901 ORTHO05D003183 6.4e-06 57.0 57 49.1
FAN28G2975 Fragaria x ananassa HOM05D002901 ORTHO05D003183 6.4e-06 57.0 67 44.8
Lsat_1_v5_gn_4_41901 Lactuca sativa HOM05D002901 ORTHO05D003183 6.4e-06 57.0 57 47.4
Psat7g007760 Pisum sativum HOM05D002901 ORTHO05D003183 6.4e-06 57.0 57 49.1
Glyma.05G239200 Glycine max HOM05D002901 ORTHO05D003183 8.3e-06 56.6 57 47.4
SalBow4G1505 Salvia bowleyana HOM05D002901 ORTHO05D003183 8.3e-06 56.6 57 47.4


User provided reference genes

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