Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.1e-182 643.3 336 100.0
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.5e-120 436.8 357 70.9
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 8.3e-119 431.0 345 70.4
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 8.3e-119 431.0 352 69.9
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 1.6e-117 426.8 350 70.3
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 1.3e-116 423.7 351 72.6
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 3.8e-116 422.2 351 73.5
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.5e-115 420.2 374 64.7
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 1.9e-115 419.9 356 69.9
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.2e-115 419.1 374 64.7
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 3.2e-115 419.1 374 64.7
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 9.4e-115 417.5 334 71.9
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.2e-114 417.2 363 67.8
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 1.2e-114 417.2 358 68.2
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 8.8e-113 411.0 349 68.2
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.5e-112 410.2 348 67.5
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 3.4e-112 409.1 351 67.2
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 4.4e-112 408.7 346 70.5
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.7e-111 406.8 352 66.8
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.2e-111 406.4 350 68.9
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 1.6e-109 400.2 379 61.7
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 4.5e-109 398.7 338 68.9
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 7.7e-109 397.9 345 68.7
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.0e-108 397.5 350 68.0
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 3.8e-108 395.6 347 64.8
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 2.5e-107 392.9 375 63.2
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.6e-106 390.2 346 68.8
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 2.8e-106 389.4 363 64.2
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 8.0e-106 387.9 364 63.5
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 5.2e-105 385.2 352 65.3
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.0e-104 383.3 365 62.5
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 4.4e-104 382.1 337 67.1
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 5.7e-104 381.7 365 62.2
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 1.7e-103 380.2 327 67.6
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 1.1e-102 377.5 365 63.8
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 1.8e-102 376.7 361 63.4
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 3.1e-102 375.9 386 60.6
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 5.4e-102 375.2 368 61.7
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 1.6e-101 373.6 348 63.5
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.6e-101 373.6 348 62.9
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 2.7e-101 372.9 390 59.7
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 5.9e-101 371.7 353 64.0
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 1.0e-100 370.9 365 61.4
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.0e-100 370.9 365 61.4
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.3e-100 370.5 397 59.2
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 2.3e-100 369.8 346 63.0
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 3.9e-100 369.0 325 66.5
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 6.6e-100 368.2 408 57.4
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.9e-99 366.7 363 61.4
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 8.0e-98 361.3 347 62.8
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 1.4e-97 360.5 458 51.7
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 2.3e-97 359.8 329 65.3
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 1.5e-96 357.1 364 60.4
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 4.4e-96 355.5 383 57.7
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 5.8e-96 355.1 336 62.8
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 7.5e-96 354.8 367 59.9
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 1.3e-95 354.0 365 59.5
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 9.2e-94 347.8 386 55.4
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 9.2e-94 347.8 360 60.3
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 1.2e-93 347.4 443 51.5
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.3e-92 344.0 281 71.2
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 3.0e-92 342.8 392 55.4
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 5.0e-92 342.0 391 55.2
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 6.6e-92 341.7 354 60.7
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 1.1e-91 340.9 352 62.5
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 1.5e-91 340.5 299 64.2
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 2.5e-91 339.7 340 62.9
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 4.3e-91 339.0 367 59.7
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 5.6e-91 338.6 475 48.2
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 9.5e-91 337.8 357 58.3
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 2.1e-90 336.7 388 54.6
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 2.8e-90 336.3 364 58.0
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 3.6e-90 335.9 410 54.1
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 4.7e-90 335.5 376 55.6
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 4.7e-90 335.5 353 58.1
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 1.4e-89 334.0 475 47.8
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 2.6e-88 329.7 329 59.9
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 7.5e-88 328.2 402 54.2
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 8.3e-87 324.7 368 59.0
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 1.1e-86 324.3 403 52.4
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 4.1e-86 322.4 375 54.9
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 1.6e-85 320.5 362 55.5
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.3e-84 317.4 361 54.8
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.1e-83 314.3 361 54.8
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 1.9e-83 313.5 371 55.5
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 2.5e-83 313.2 337 59.6
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 2.3e-81 306.6 426 48.8
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 1.2e-80 304.3 352 54.0
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 2.6e-80 303.1 374 52.4
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 1.4e-78 297.4 417 48.2
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 7.8e-77 291.6 340 56.5
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 3.0e-76 289.7 440 47.5
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 6.6e-76 288.5 363 52.1
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 6.6e-76 288.5 443 46.7
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 4.3e-75 285.8 440 46.8
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 5.6e-75 285.4 444 45.5
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 9.5e-75 284.6 445 45.4
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 2.1e-74 283.5 442 46.8
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 1.5e-72 277.3 473 44.0
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 3.4e-72 276.2 461 43.2
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 4.9e-71 272.3 439 45.6
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 8.4e-71 271.6 475 43.6
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 1.1e-70 271.2 440 45.2
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 2.1e-69 266.9 475 43.6
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 2.7e-69 266.5 474 43.0
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 6.0e-69 265.4 370 48.4
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.3e-68 264.2 325 50.2
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 1.9e-67 260.4 470 43.6
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 3.6e-66 256.1 336 50.9
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 3.6e-66 256.1 345 49.3
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 1.1e-65 254.6 325 51.1
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 9.0e-65 251.5 425 43.8
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 5.8e-64 248.8 277 59.2
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 1.2e-61 241.1 279 58.1
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.3e-60 237.7 393 45.8
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 1.3e-58 231.1 318 50.6
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 1.6e-58 230.7 410 42.7
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 1.3e-55 221.1 372 48.4
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 6.0e-53 212.2 417 39.6
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 3.9e-52 209.5 370 43.5
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 4.8e-50 202.6 247 53.4
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 4.8e-50 202.6 315 46.7
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 3.4e-48 196.4 316 45.9
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 3.8e-47 193.0 336 45.8
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 3.8e-47 193.0 315 45.4
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 2.8e-42 176.8 358 41.6
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 5.3e-41 172.6 117 76.1
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 4.6e-37 159.5 343 39.7
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 1.5e-35 154.5 332 38.9
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 4.6e-29 132.9 102 68.6
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.7e-23 114.4 82 76.8
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 2.5e-22 110.5 64 84.4
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 1.8e-20 104.4 269 35.7
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.8e-20 102.1 67 74.6
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 1.5e-19 101.3 84 63.1
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 5.7e-19 99.4 67 73.1
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 7.4e-19 99.0 67 71.6
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 9.7e-19 98.6 217 36.9
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 4.8e-18 96.3 71 66.2
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 1.2e-16 91.7 327 33.6
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.7e-15 87.8 66 68.2
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 1.1e-14 85.1 153 42.5
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.2e-14 83.2 56 73.2
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 4.7e-13 79.7 175 39.4
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 4.7e-13 79.7 179 41.9
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 2.3e-12 77.4 101 50.5
C05p10080 Brassica napus HOM05D004847 ORTHO05D005856 2.0e-11 74.3 226 36.7
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 5.3e-09 66.2 52 71.2
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.0e-09 65.9 52 71.2
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.0e-09 65.9 52 71.2
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.0e-09 65.9 52 71.2
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.0e-09 65.9 52 71.2
Gohir.D07G076600 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.6e-08 64.7 52 69.2
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 2.0e-08 64.3 52 69.2
Gohir.D05G046500 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.9e-07 60.5 52 67.3


User provided reference genes

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