Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 0.0e+00 3075.4 1627 100.0
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1674.1 1610 63.7
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 0.0e+00 1624.8 1704 58.2
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 0.0e+00 1498.8 1621 58.4
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 0.0e+00 1485.7 1627 60.0
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 0.0e+00 1318.9 1680 50.5
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 0.0e+00 1304.3 1613 52.4
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 0.0e+00 1288.9 1600 51.6
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 0.0e+00 1265.0 1598 50.8
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 0.0e+00 1254.6 1634 50.9
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 0.0e+00 1254.2 1699 48.0
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 0.0e+00 1241.1 1628 49.9
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 0.0e+00 1230.7 1620 50.1
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 0.0e+00 1208.0 1643 49.6
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 0.0e+00 1189.9 1627 50.1
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 0.0e+00 1189.5 1626 50.0
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 0.0e+00 1182.5 1612 49.5
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 0.0e+00 1182.2 1210 59.5
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 0.0e+00 1178.3 1628 49.4
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 0.0e+00 1171.8 1627 48.5
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 0.0e+00 1165.6 1662 48.0
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 0.0e+00 1155.2 1639 48.9
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 0.0e+00 1152.5 1602 48.1
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 0.0e+00 1144.8 1617 48.2
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 0.0e+00 1132.1 1637 47.2
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 0.0e+00 1130.9 1605 47.4
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 0.0e+00 1124.8 1610 47.9
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 0.0e+00 1116.3 1628 46.7
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 0.0e+00 1102.0 1667 46.2
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 0.0e+00 1101.3 1601 47.1
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 0.0e+00 1100.5 1595 47.0
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 0.0e+00 1099.7 1613 46.8
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 0.0e+00 1096.6 1652 46.1
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 0.0e+00 1084.7 1615 46.9
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 0.0e+00 1083.6 1616 47.3
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 0.0e+00 1080.9 1623 46.6
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 0.0e+00 1078.2 1648 46.7
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.1e-311 1074.7 1624 46.3
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 1.3e-310 1070.5 1633 46.5
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 4.9e-310 1068.5 1595 46.1
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 7.1e-309 1064.7 1621 46.5
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 6.0e-308 1061.6 1661 45.0
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 1.8e-307 1060.1 1616 46.3
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 1.5e-306 1057.0 1611 46.1
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 8.7e-299 1031.2 1629 45.8
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 9.7e-298 1027.7 1661 45.3
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 5.9e-295 1018.5 1635 44.5
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 3.3e-290 1002.7 1615 44.8
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 2.0e-287 993.4 1636 45.4
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 3.8e-286 989.2 1607 44.2
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 5.0e-286 988.8 1618 44.6
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 1.4e-285 987.3 1631 44.3
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 1.2e-279 967.6 1610 43.2
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 1.3e-278 964.1 1663 43.2
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 8.0e-276 954.9 1668 42.6
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 2.0e-271 940.3 1437 45.0
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 2.2e-270 936.8 1607 41.9
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 8.5e-270 934.9 1551 42.9
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 5.2e-267 925.6 1631 42.7
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 6.7e-267 925.2 1607 42.6
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 2.6e-266 923.3 1638 42.6
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 3.3e-266 922.9 1618 43.1
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 4.4e-266 922.5 1671 43.1
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 9.7e-266 921.4 1622 43.8
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 1.3e-265 921.0 1634 44.1
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 3.2e-261 906.4 1616 41.5
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 7.5e-258 895.2 1620 41.3
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 9.8e-258 894.8 1597 41.8
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 1.6e-255 887.5 1596 43.0
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 4.7e-252 875.9 1291 46.6
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 7.5e-250 868.6 1608 40.9
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 1.2e-247 861.3 1604 41.5
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 7.3e-245 852.0 1230 50.7
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 7.0e-240 835.5 1609 40.6
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 3.5e-239 833.2 1609 41.3
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 1.7e-238 830.9 1619 41.1
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 9.5e-237 825.1 1644 40.2
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 2.8e-236 823.5 1405 42.8
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 6.8e-235 818.9 1743 39.9
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 1.5e-234 817.8 1589 40.7
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 9.2e-232 808.5 1597 40.1
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 4.3e-229 799.7 1602 39.1
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 2.0e-226 790.8 1595 40.4
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 4.3e-221 773.1 1592 38.5
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 4.7e-220 769.6 1357 42.7
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.6e-215 754.6 1598 37.3
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 1.3e-214 751.5 1670 39.5
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 2.5e-213 747.3 1590 39.9
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 1.3e-206 724.9 1603 37.5
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 5.1e-206 723.0 1630 39.6
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 3.3e-205 720.3 1596 37.2
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 1.8e-203 714.5 1616 37.3
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 8.4e-201 705.7 1734 36.3
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 1.2e-199 701.8 1717 36.9
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 4.5e-186 656.8 1604 35.3
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 4.2e-184 650.2 1582 37.5
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 1.6e-183 648.3 1602 35.2
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 1.1e-179 635.6 1590 35.8
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.2e-178 632.1 690 58.1
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 1.2e-178 632.1 1603 35.1
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 2.0e-178 631.3 1600 34.8
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 2.5e-176 624.4 1644 34.7
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 3.1e-171 607.4 1592 35.3
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 7.7e-170 602.8 1580 37.0
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 2.2e-169 601.3 1627 34.2
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 2.3e-166 591.3 1602 34.7
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 8.8e-166 589.3 1601 34.6
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 2.0e-165 588.2 1615 34.2
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 4.4e-165 587.0 982 43.3
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 5.9e-162 576.6 1601 34.5
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 1.3e-161 575.5 1602 34.6
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.3e-156 558.9 1496 35.3
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 3.1e-155 554.3 772 45.9
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 5.3e-155 553.5 1613 34.3
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 3.5e-154 550.8 1613 33.3
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 5.0e-153 547.0 1603 33.4
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 1.5e-152 545.4 1602 33.0
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 3.2e-152 544.3 1602 33.8
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 5.2e-150 537.0 1610 32.4
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 3.1e-147 527.7 695 50.5
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 6.5e-145 520.0 489 63.0
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 1.9e-144 518.5 1600 33.1
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 2.5e-144 518.1 1650 33.8
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 9.5e-136 489.6 1595 31.9
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.4e-123 449.1 327 76.5
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 7.1e-115 420.2 1592 30.2
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.5e-112 412.5 490 53.5
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 9.6e-88 330.1 1567 30.4
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.8e-84 318.2 371 55.3
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 3.7e-79 301.6 1658 28.3
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 1.2e-74 286.6 1579 28.3
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 2.3e-73 282.3 192 78.6
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.7e-68 266.2 1279 30.0
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 8.2e-63 247.3 1571 25.6
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.4e-62 245.7 208 70.7
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 5.5e-59 234.6 710 33.1
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.5e-53 216.5 201 61.7
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.7e-52 213.0 1545 26.7
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.8e-47 195.7 211 60.2
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 5.0e-44 184.9 1527 26.9
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.6e-42 179.9 1284 27.3
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 8.5e-36 157.5 189 57.1
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 1.6e-26 126.7 190 45.3
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 6.8e-25 121.3 216 41.2
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 8.8e-25 120.9 79 81.0
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 7.0e-22 111.3 177 45.2
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.6e-21 110.2 150 50.0
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 3.5e-21 109.0 167 44.3
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 1.3e-20 107.1 494 31.0
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 4.3e-19 102.1 138 45.7
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.6e-18 100.1 231 39.8
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 4.0e-17 95.5 1439 25.0
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 8.9e-17 94.4 513 32.4
Psat1g046400 Pisum sativum HOM05D004430 ORTHO05D005088 3.2e-14 85.9 174 37.9
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 4.1e-14 85.5 1621 24.4
THA.LOC104816711 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.6e-13 83.6 257 26.8
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 1.8e-09 70.1 507 27.4
SHI23780 Sapria himalayana HOM05D004430 ORTHO05D005088 5.8e-08 65.1 141 40.4
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 4.1e-06 58.9 1342 24.4


User provided reference genes

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