Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 0.0e+00 1185.6 606 100.0
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 2.7e-184 649.4 569 65.6
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 1.4e-161 573.9 567 61.6
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 2.3e-135 486.9 532 56.6
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 2.2e-114 417.2 464 56.5
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 2.1e-104 384.0 581 44.1
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 3.3e-102 376.7 585 44.4
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 6.5e-90 335.9 570 43.3
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 1.6e-88 331.3 566 41.9
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 1.8e-87 327.8 572 43.7
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 2.3e-87 327.4 587 41.4
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 6.7e-87 325.9 508 44.3
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 1.5e-86 324.7 577 43.3
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 6.3e-85 319.3 588 41.7
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 1.1e-84 318.5 575 41.6
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 4.2e-81 306.6 586 38.6
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 9.4e-81 305.4 623 38.5
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 4.7e-80 303.1 593 40.1
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 6.1e-80 302.8 570 40.9
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 1.8e-79 301.2 610 39.0
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 4.1e-76 290.0 599 38.4
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 1.6e-75 288.1 597 38.4
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 4.2e-73 280.0 446 44.8
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 2.7e-72 277.3 580 37.1
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 9.8e-70 268.9 568 38.4
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 1.1e-68 265.4 554 37.5
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.8e-68 264.6 412 44.2
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 1.8e-68 264.6 623 36.8
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 1.3e-66 258.5 639 36.0
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 3.8e-66 256.9 569 38.0
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 8.6e-66 255.8 569 38.1
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.2e-64 251.9 590 36.9
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 2.8e-64 250.8 654 34.1
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 2.8e-64 250.8 644 36.3
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.0e-63 248.8 684 33.3
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 2.3e-63 247.7 554 35.6
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 1.2e-62 245.4 550 36.5
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 1.7e-61 241.5 605 36.4
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 1.8e-60 238.0 584 36.6
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 7.0e-60 236.1 558 35.8
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 7.8e-59 232.6 658 33.3
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 3.9e-58 230.3 557 36.4
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 6.6e-58 229.6 660 32.9
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 6.6e-58 229.6 522 36.4
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 1.2e-56 225.3 581 34.3
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 2.3e-55 221.1 504 36.3
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 1.2e-54 218.8 581 34.8
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.5e-54 218.4 635 33.2
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 3.4e-54 217.2 556 34.5
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 9.8e-54 215.7 586 34.0
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 2.2e-53 214.5 467 37.9
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.9e-53 214.2 624 32.1
vmacro08149 Vaccinium macrocarpon HOM05D005434 ORTHO05D006412 8.3e-53 212.6 218 57.8
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 1.4e-52 211.8 520 36.0
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 1.9e-52 211.5 550 35.3
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 2.4e-52 211.1 627 32.2
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 3.2e-52 210.7 628 31.7
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 7.8e-51 206.1 465 36.1
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 7.8e-51 206.1 564 33.9
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 3.0e-50 204.1 567 34.0
Lalb_Chr02g0147191 Lupinus albus HOM05D005434 ORTHO05D006412 3.9e-50 203.8 570 32.6
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 8.9e-47 192.6 567 30.9
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 3.4e-46 190.7 588 33.2
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 5.8e-46 189.9 580 31.0
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 2.2e-45 188.0 590 33.7
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 1.4e-44 185.3 565 32.6
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 1.9e-44 184.9 536 33.6
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 4.6e-43 180.3 541 33.5
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 2.3e-42 177.9 577 32.2
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 3.0e-42 177.6 579 32.5
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 3.9e-42 177.2 594 31.6
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 1.1e-41 175.6 479 33.6
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 4.3e-41 173.7 569 31.1
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 7.3e-41 172.9 600 30.8
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 7.3e-41 172.9 605 30.9
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 4.7e-40 170.2 685 29.6
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 1.5e-38 165.2 575 32.3
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 1.3e-37 162.2 564 30.9
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 1.7e-37 161.8 581 31.7
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 3.8e-37 160.6 616 28.6
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 3.8e-37 160.6 566 31.4
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 1.2e-35 155.6 562 32.9
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 2.1e-35 154.8 571 30.1
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 2.1e-35 154.8 580 30.0
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 3.9e-34 150.6 564 29.4
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 6.6e-34 149.8 601 30.9
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 8.6e-34 149.4 592 30.6
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 3.3e-33 147.5 618 29.1
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 7.3e-33 146.4 564 30.0
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 2.8e-32 144.4 683 29.4
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 8.1e-32 142.9 596 29.9
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 4.0e-31 140.6 587 30.3
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 1.9e-28 131.7 589 30.2
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 2.1e-27 128.3 566 31.8
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 1.7e-26 125.2 591 30.5
Actinidia21335 Actinidia chinensis HOM05D005434 ORTHO05D006412 2.3e-26 124.8 117 58.1
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 5.1e-26 123.6 486 30.0
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 2.4e-23 114.8 595 28.7
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 3.4e-22 110.9 304 33.9
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.3e-18 99.0 571 26.8
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 2.5e-17 94.7 578 28.4
Sc17g0000060 Simmondsia chinensis HOM05D005434 ORTHO05D006412 2.5e-17 94.7 585 26.0
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 1.1e-15 89.4 599 26.4
Dinv33188 Davidia involucrata HOM05D005434 ORTHO05D006412 1.1e-15 89.4 101 53.5
Dinv33177 Davidia involucrata HOM05D005434 ORTHO05D006412 2.4e-15 88.2 111 47.7
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 6.9e-15 86.7 597 26.5
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 9.0e-15 86.3 367 29.7
Dinv12077 Davidia involucrata HOM05D005434 ORTHO05D006412 8.4e-13 79.7 68 69.1
FAN12G4172 Fragaria x ananassa HOM05D005434 ORTHO05D006412 8.4e-13 79.7 117 43.6
HanXRQChr10g0286491 Helianthus annuus HOM05D005434 ORTHO05D006412 6.7e-10 70.1 531 23.5
FvH4_4g08230 Fragaria vesca HOM05D005434 ORTHO05D006412 6.9e-07 60.1 136 33.8
FAN18G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 4.5e-06 57.4 125 36.8


User provided reference genes

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