Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 1.5e-44 182.6 96 100.0
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 2.0e-25 119.0 81 72.8
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 7.5e-25 117.1 77 74.0
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 7.1e-23 110.5 74 74.3
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 9.2e-23 110.2 74 73.0
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 1.6e-22 109.4 73 76.7
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 3.5e-22 108.2 73 71.2
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 1.0e-21 106.7 78 67.9
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 1.3e-21 106.3 81 66.7
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 3.0e-21 105.1 74 68.9
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 2.5e-20 102.1 73 71.2
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 9.5e-20 100.1 74 67.6
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 9.5e-20 100.1 74 70.3
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 9.5e-20 100.1 73 67.1
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 1.6e-19 99.4 74 70.3
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 2.8e-19 98.6 74 70.3
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 3.6e-19 98.2 74 62.2
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 4.7e-19 97.8 72 66.7
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 6.2e-19 97.4 84 58.3
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 6.2e-19 97.4 81 58.0
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 8.1e-19 97.1 81 64.2
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 8.1e-19 97.1 73 63.0
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 8.1e-19 97.1 73 63.0
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 8.1e-19 97.1 73 63.0
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 1.8e-18 95.9 74 63.5
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 1.8e-18 95.9 73 63.0
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 4.0e-18 94.7 84 57.1
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 4.0e-18 94.7 73 63.0
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 5.2e-18 94.4 73 61.6
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 5.2e-18 94.4 74 62.2
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 6.8e-18 94.0 80 58.8
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 1.2e-17 93.2 78 59.0
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 2.0e-17 92.4 76 60.5
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 3.4e-17 91.7 73 64.4
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 3.4e-17 91.7 79 59.5
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 4.4e-17 91.3 76 60.5
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 5.8e-17 90.9 74 62.2
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 7.6e-17 90.5 80 57.5
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 7.6e-17 90.5 76 57.9
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 9.9e-17 90.1 74 59.5
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 9.9e-17 90.1 74 58.1
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 2.2e-16 89.0 74 58.1
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 2.9e-16 88.6 85 54.1
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 2.9e-16 88.6 80 53.8
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 3.7e-16 88.2 74 60.8
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 4.9e-16 87.8 73 58.9
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 1.1e-15 86.7 67 62.7
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 1.9e-15 85.9 80 55.0
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.9e-15 85.9 74 59.5
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.4e-15 85.5 74 59.5
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.4e-15 85.5 74 59.5
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 3.2e-15 85.1 69 60.9
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 3.2e-15 85.1 73 61.6
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 4.1e-15 84.7 74 58.1
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 5.4e-15 84.3 71 57.7
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 1.2e-14 83.2 76 59.2
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 2.1e-14 82.4 62 59.7
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 2.1e-14 82.4 74 56.8
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 2.7e-14 82.0 69 59.4
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 4.6e-14 81.3 73 54.8
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 6.0e-14 80.9 77 49.4
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 1.0e-13 80.1 75 46.7
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 2.3e-13 79.0 64 62.5
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 3.0e-13 78.6 74 47.3
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 3.0e-13 78.6 74 45.9
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 4.3e-12 74.7 74 45.9
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 5.6e-12 74.3 74 43.2
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 9.6e-12 73.6 74 44.6
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 9.6e-12 73.6 74 44.6
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 9.6e-12 73.6 77 46.8
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 1.2e-11 73.2 57 59.6
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.6e-11 72.8 77 45.5
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 1.6e-11 72.8 74 43.2
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 2.1e-11 72.4 77 44.2
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 3.6e-11 71.6 74 43.2
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 6.2e-11 70.9 73 49.3
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 8.1e-11 70.5 74 45.9
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.4e-10 69.7 74 43.2
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 1.4e-10 69.7 115 40.0
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 2.4e-10 68.9 63 52.4
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 2.4e-10 68.9 63 52.4
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 2.4e-10 68.9 40 85.0
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 4.0e-10 68.2 71 43.7
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 2.0e-09 65.9 66 47.0
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 2.6e-09 65.5 40 75.0
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 3.4e-09 65.1 46 65.2
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 3.4e-09 65.1 44 75.0
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 5.8e-09 64.3 73 39.7
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 2.2e-08 62.4 41 70.7
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 4.9e-08 61.2 74 44.6
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 4.9e-08 61.2 40 67.5
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 4.9e-08 61.2 42 66.7
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 6.4e-08 60.8 43 67.4
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 8.4e-08 60.5 63 50.8
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 1.9e-07 59.3 61 47.5
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 2.4e-07 58.9 148 31.1
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 3.2e-07 58.5 72 44.4
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 9.3e-07 57.0 40 70.0
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 9.3e-07 57.0 40 70.0
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 1.2e-06 56.6 41 70.7
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 2.7e-06 55.5 53 54.7


User provided reference genes

Program Settings