Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.4e-139 499.6 242 100.0
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.1e-88 330.5 218 72.9
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 2.4e-88 329.3 218 72.9
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 1.6e-87 326.6 210 73.8
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 1.4e-83 313.5 215 70.2
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 1.8e-83 313.2 201 73.6
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 5.8e-82 308.1 222 66.2
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.1e-77 293.9 206 65.0
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 1.9e-77 293.1 208 65.9
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 5.6e-77 291.6 198 68.2
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 9.6e-77 290.8 208 62.0
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.6e-76 290.0 219 62.6
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.6e-76 290.0 207 63.8
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 1.4e-75 287.0 206 68.4
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 2.4e-75 286.2 201 64.2
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 2.4e-75 286.2 206 63.6
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 4.0e-75 285.4 199 66.8
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 5.3e-75 285.0 207 66.7
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 9.0e-75 284.3 226 59.7
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 2.6e-74 282.7 211 64.0
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 2.6e-74 282.7 206 63.1
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 4.5e-74 282.0 211 60.7
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.3e-73 280.4 212 64.2
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 1.4e-72 276.9 199 66.3
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.2e-72 275.8 202 63.9
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.2e-72 275.8 202 63.9
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 4.2e-72 275.4 198 65.2
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 4.2e-72 275.4 207 62.8
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 5.4e-72 275.0 195 66.2
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 9.3e-72 274.2 219 59.4
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 1.2e-71 273.9 204 61.3
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 1.6e-71 273.5 215 59.5
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 2.1e-71 273.1 213 60.1
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 2.7e-71 272.7 198 64.6
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 2.7e-71 272.7 223 59.6
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 4.6e-71 271.9 217 59.4
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 7.9e-71 271.2 191 64.4
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 7.9e-71 271.2 195 66.7
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 7.9e-71 271.2 214 62.1
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.8e-70 270.0 214 57.9
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 3.0e-70 269.2 216 58.3
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 3.9e-70 268.9 195 63.1
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 3.9e-70 268.9 212 61.3
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 3.9e-70 268.9 212 61.3
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 1.1e-69 267.3 195 63.1
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 2.5e-69 266.2 215 58.1
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 2.5e-69 266.2 190 64.2
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 2.5e-69 266.2 201 62.7
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 3.3e-69 265.8 223 57.8
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 7.4e-69 264.6 213 56.3
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 9.6e-69 264.2 224 57.6
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 9.6e-69 264.2 211 59.7
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.3e-68 263.8 197 62.9
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.3e-68 263.8 197 62.9
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 1.6e-68 263.5 223 58.7
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 2.8e-68 262.7 213 56.3
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 2.8e-68 262.7 188 63.3
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 3.7e-68 262.3 193 62.7
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 4.8e-68 261.9 211 61.1
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 4.8e-68 261.9 193 61.1
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 6.2e-68 261.5 208 60.6
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 8.1e-68 261.2 199 60.3
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 1.8e-67 260.0 217 56.7
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 2.4e-67 259.6 188 66.0
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 3.1e-67 259.2 193 62.2
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 5.3e-67 258.5 219 55.3
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 5.3e-67 258.5 202 60.4
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 6.9e-67 258.1 193 61.1
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 9.0e-67 257.7 195 61.5
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 2.0e-66 256.5 193 61.1
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 2.6e-66 256.1 191 62.3
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 5.8e-66 255.0 217 57.6
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 7.6e-66 254.6 210 61.0
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 1.0e-65 254.2 199 60.3
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 1.0e-65 254.2 193 61.7
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 1.3e-65 253.8 197 58.4
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 1.7e-65 253.4 193 60.6
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 2.9e-65 252.7 219 54.8
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 6.5e-65 251.5 229 55.0
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 8.4e-65 251.1 250 51.2
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 8.4e-65 251.1 220 55.0
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 1.1e-64 250.8 188 61.7
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.4e-64 250.4 168 70.8
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.5e-64 249.6 218 56.4
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 4.2e-64 248.8 218 55.0
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 4.2e-64 248.8 211 58.8
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 7.1e-64 248.1 169 67.5
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 7.1e-64 248.1 193 60.1
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 9.3e-64 247.7 218 54.1
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 2.7e-63 246.1 210 56.7
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 2.7e-63 246.1 207 57.0
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 3.5e-63 245.7 217 53.5
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 6.0e-63 245.0 196 59.2
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 7.9e-63 244.6 196 58.2
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 7.9e-63 244.6 208 55.3
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 1.0e-62 244.2 208 56.7
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 1.3e-62 243.8 196 59.7
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 1.3e-62 243.8 196 59.7
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 3.0e-62 242.7 203 57.6
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 3.0e-62 242.7 196 59.2
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 3.9e-62 242.3 206 55.8
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 3.9e-62 242.3 202 55.0
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 3.9e-62 242.3 188 59.6
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 6.7e-62 241.5 204 56.9
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 1.9e-61 240.0 204 52.9
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.3e-61 239.2 193 57.5
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 4.3e-61 238.8 196 59.2
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 5.7e-61 238.4 218 61.5
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 9.6e-61 237.7 213 52.1
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 1.3e-60 237.3 199 55.8
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 1.6e-60 236.9 204 53.4
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 2.1e-60 236.5 196 56.1
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 2.8e-60 236.1 209 54.1
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 1.4e-59 233.8 205 54.6
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 2.4e-59 233.0 203 53.7
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 5.3e-59 231.9 203 54.2
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 5.3e-59 231.9 202 55.0
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 3.4e-58 229.2 209 52.6
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 4.5e-58 228.8 195 52.3
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.0e-57 227.6 203 53.2
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.3e-57 227.3 205 54.6
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 3.8e-57 225.7 203 54.2
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 6.5e-57 224.9 207 53.1
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 6.5e-57 224.9 199 50.8
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 1.9e-56 223.4 205 53.2
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 1.6e-55 220.3 196 52.6
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 4.6e-55 218.8 133 78.9
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 6.1e-55 218.4 196 52.6
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 7.9e-55 218.0 196 52.6
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 1.0e-54 217.6 197 51.8
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 1.3e-54 217.2 226 47.8
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 1.3e-54 217.2 206 50.5
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 1.3e-54 217.2 198 52.0
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 6.7e-54 214.9 207 52.2
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 1.1e-53 214.2 193 51.8
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 2.5e-53 213.0 206 50.0
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 2.5e-53 213.0 206 50.0
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.4e-51 207.2 219 50.2
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 9.0e-51 204.5 224 46.4
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 1.2e-50 204.1 187 54.0
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 2.0e-50 203.4 225 45.8
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 4.5e-50 202.2 153 62.7
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.0e-49 201.1 212 47.2
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 5.0e-49 198.7 194 47.4
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 4.8e-44 182.2 133 61.7
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 2.2e-41 173.3 198 44.4
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 8.5e-41 171.4 163 51.5
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 5.5e-40 168.7 227 38.8
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 5.5e-40 168.7 138 59.4
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 4.7e-39 165.6 105 73.3
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 4.8e-36 155.6 113 66.4
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 1.7e-33 147.1 119 56.3
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 5.0e-33 145.6 139 54.7
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 7.2e-32 141.7 99 68.7
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 2.1e-31 140.2 153 47.7
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 4.7e-31 139.0 156 48.1
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 8.8e-30 134.8 110 58.2
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 1.4e-27 127.5 101 58.4
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 2.4e-27 126.7 150 42.0
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.7e-26 123.2 118 53.4
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 7.7e-26 121.7 173 34.7
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 1.6e-23 114.0 103 50.5
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 4.0e-22 109.4 75 65.3
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 4.0e-22 109.4 103 52.4
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 1.5e-21 107.5 118 53.4
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 2.6e-21 106.7 111 45.0
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 3.4e-21 106.3 111 45.0
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.1e-19 101.3 87 59.8
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 4.1e-19 99.4 85 51.8
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 7.0e-19 98.6 102 45.1
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 3.5e-18 96.3 133 37.6
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 2.2e-17 93.6 81 53.1
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 1.1e-16 91.3 85 48.2
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 4.0e-14 82.8 86 43.0
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 2.8e-12 76.6 78 42.3
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 4.1e-11 72.8 62 50.0
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 2.7e-10 70.1 61 50.8


User provided reference genes

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