Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010761 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 1.9e-46 189.1 116 100.0
CSS0035828 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 3.6e-45 184.9 116 98.3
CSS0012712 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 2.1e-37 159.1 84 95.2
CSS0013743 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 2.1e-37 159.1 84 95.2
CSS0035662 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 2.1e-37 159.1 84 95.2
CSS0030381 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 5.1e-36 154.5 84 90.5
Actinidia23893 Actinidia chinensis HOM05D003657 ORTHO05D004286 2.6e-35 152.1 84 89.3
Actinidia34451 Actinidia chinensis HOM05D003657 ORTHO05D004286 5.7e-35 151.0 84 88.1
Dinv28627 Davidia involucrata HOM05D003657 ORTHO05D004286 5.7e-35 151.0 84 88.1
Rhsim01G0235900 Rhododendron simsii HOM05D003657 ORTHO05D004286 7.4e-35 150.6 84 88.1
vmacro14588 Vaccinium macrocarpon HOM05D003657 ORTHO05D004286 1.7e-34 149.4 84 88.1
vmacro02979 Vaccinium macrocarpon HOM05D003657 ORTHO05D004286 2.8e-34 148.7 84 84.5
GSVIVG01024772001 Vitis vinifera HOM05D003657 ORTHO05D004286 6.3e-34 147.5 84 83.3
Hma1.2p1_0863F.1_g229980 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 3.1e-33 145.2 84 86.9
Hma1.2p1_0227F.1_g096420 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 5.3e-33 144.4 84 85.7
Hma1.2p1_3301F.1_g335025 Hydrangea macrophylla HOM05D003657 ORTHO05D004286 7.0e-33 144.1 84 85.7
HanXRQChr08g0229531 Helianthus annuus HOM05D003657 ORTHO05D004286 2.6e-32 142.1 84 81.0
Oeu045526.2 Olea europaea HOM05D003657 ORTHO05D004286 3.5e-32 141.7 84 81.0
SalBow6G0197 Salvia bowleyana HOM05D003657 ORTHO05D004286 3.5e-32 141.7 84 82.1
HanXRQChr17g0562071 Helianthus annuus HOM05D003657 ORTHO05D004286 4.5e-32 141.4 84 81.0
Nitab4.5_0000807g0050 Nicotiana tabacum HOM05D003657 ORTHO05D004286 5.9e-32 141.0 84 81.0
Nitab4.5_0000170g0210 Nicotiana tabacum HOM05D003657 ORTHO05D004286 7.7e-32 140.6 84 79.8
Gohir.D03G117100 Gossypium hirsutum HOM05D003657 ORTHO05D004286 1.0e-31 140.2 84 78.6
Gorai.003G123500 Gossypium raimondii HOM05D003657 ORTHO05D004286 1.0e-31 140.2 84 78.6
Cfa011669 Carpinus fangiana HOM05D003657 ORTHO05D004286 2.2e-31 139.0 84 79.8
HanXRQChr14g0433451 Helianthus annuus HOM05D003657 ORTHO05D004286 2.2e-31 139.0 84 78.6
DCAR_018959 Daucus carota HOM05D003657 ORTHO05D004286 2.9e-31 138.7 84 79.8
Lsat_1_v5_gn_9_19501 Lactuca sativa HOM05D003657 ORTHO05D004286 3.8e-31 138.3 84 77.4
Haze_24275 Corylus avellana HOM05D003657 ORTHO05D004286 6.5e-31 137.5 84 78.6
Gohir.A03G050300 Gossypium hirsutum HOM05D003657 ORTHO05D004286 6.5e-31 137.5 84 77.4
Peaxi162Scf00540g00620 Petunia axillaris HOM05D003657 ORTHO05D004286 6.5e-31 137.5 84 79.8
Thecc.09G304100 Theobroma cacao HOM05D003657 ORTHO05D004286 6.5e-31 137.5 84 76.2
Duzib170G0663 Durio zibethinus HOM05D003657 ORTHO05D004286 1.1e-30 136.7 83 78.3
Nitab4.5_0000010g0240 Nicotiana tabacum HOM05D003657 ORTHO05D004286 1.1e-30 136.7 84 78.6
Nitab4.5_0005502g0010 Nicotiana tabacum HOM05D003657 ORTHO05D004286 1.1e-30 136.7 84 78.6
PGSC0003DMG400030351 Solanum tuberosum HOM05D003657 ORTHO05D004286 1.1e-30 136.7 84 79.8
CANSAT54G0812 Cannabis sativa HOM05D003657 ORTHO05D004286 2.5e-30 135.6 84 77.4
QL01p037650 Quercus lobata HOM05D003657 ORTHO05D004286 2.5e-30 135.6 84 77.4
Eucgr.B02268 Eucalyptus grandis HOM05D003657 ORTHO05D004286 4.2e-30 134.8 84 77.4
Cc01_g14050 Coffea canephora HOM05D003657 ORTHO05D004286 5.5e-30 134.4 84 79.8
CiPaw.13G079800 Carya illinoinensis HOM05D003657 ORTHO05D004286 7.2e-30 134.0 84 76.2
Sabra16G0152200 Salix brachista HOM05D003657 ORTHO05D004286 7.2e-30 134.0 84 75.0
Solyc06g076860.4 Solanum lycopersicum HOM05D003657 ORTHO05D004286 1.2e-29 133.3 84 77.4
Sopen06g033250 Solanum pennellii HOM05D003657 ORTHO05D004286 1.2e-29 133.3 84 77.4
CiPaw.14G060100 Carya illinoinensis HOM05D003657 ORTHO05D004286 1.6e-29 132.9 84 73.8
Duzib168G2233 Durio zibethinus HOM05D003657 ORTHO05D004286 2.1e-29 132.5 84 75.0
ClCG02G019640 Citrullus lanatus HOM05D003657 ORTHO05D004286 2.7e-29 132.1 84 78.6
MELO3C025862.2 Cucumis melo HOM05D003657 ORTHO05D004286 2.7e-29 132.1 84 78.6
CAN.G394.117 Capsicum annuum HOM05D003657 ORTHO05D004286 3.6e-29 131.7 84 76.2
Sed0018588 Sechium edule HOM05D003657 ORTHO05D004286 3.6e-29 131.7 84 78.6
TWI14G1047 Tripterygium wilfordii HOM05D003657 ORTHO05D004286 4.7e-29 131.3 84 76.2
Nn2g13661 Nelumbo nucifera HOM05D003657 ORTHO05D004286 6.1e-29 131.0 84 73.8
CsaV3_6G016310 Cucumis sativus L. HOM05D003657 ORTHO05D004286 8.0e-29 130.6 84 77.4
SGA_v2.0_scaffold28G11769 Striga asiatica HOM05D003657 ORTHO05D004286 8.0e-29 130.6 84 76.2
Manes.01G163000 Manihot esculenta HOM05D003657 ORTHO05D004286 1.8e-28 129.4 84 70.2
Migut.G00378 Erythranthe guttata HOM05D003657 ORTHO05D004286 2.3e-28 129.0 84 73.8
Migut.I00319 Erythranthe guttata HOM05D003657 ORTHO05D004286 2.3e-28 129.0 84 73.8
Ciclev10030030m.g Citrus clementina HOM05D003657 ORTHO05D004286 3.0e-28 128.6 84 70.2
CSS0017673 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 3.9e-28 128.3 90 75.6
arahy.Tifrunner.gnm1.ann1.NA7AU5 Arachis hypogaea HOM05D003657 ORTHO05D004286 8.8e-28 127.1 84 70.2
Cpa.g.sc112.42 Carica papaya HOM05D003657 ORTHO05D004286 8.8e-28 127.1 84 70.2
Ca_14923_v3 Cicer arietinum L. HOM05D003657 ORTHO05D004286 1.1e-27 126.7 84 71.4
MBI15_g31118_MAGBIO Magnolia biondii HOM05D003657 ORTHO05D004286 2.0e-27 125.9 84 71.4
PSO339G1362 Papaver somniferum HOM05D003657 ORTHO05D004286 2.6e-27 125.6 84 67.9
PGR102G3249 Punica granatum HOM05D003657 ORTHO05D004286 2.6e-27 125.6 84 70.2
Lj6g0007931 Lotus japonicus HOM05D003657 ORTHO05D004286 4.4e-27 124.8 84 70.2
unitig_0.g1519 Utricularia gibba HOM05D003657 ORTHO05D004286 4.4e-27 124.8 84 73.8
arahy.Tifrunner.gnm1.ann1.RGQY4W Arachis hypogaea HOM05D003657 ORTHO05D004286 5.7e-27 124.4 84 69.0
Glyma.08G333800 Glycine max HOM05D003657 ORTHO05D004286 5.7e-27 124.4 84 69.0
Lalb_Chr17g0345031 Lupinus albus HOM05D003657 ORTHO05D004286 5.7e-27 124.4 84 69.0
TWI79G1454 Tripterygium wilfordii HOM05D003657 ORTHO05D004286 5.7e-27 124.4 84 71.4
HanXRQChr17g0551341 Helianthus annuus HOM05D003657 ORTHO05D004286 7.4e-27 124.0 83 74.7
PSO384G3334 Papaver somniferum HOM05D003657 ORTHO05D004286 7.4e-27 124.0 84 66.7
Aqoxy4G02626 Aquilegia oxysepala HOM05D003657 ORTHO05D004286 9.7e-27 123.6 84 64.3
Medtr3g463490 Medicago truncatula HOM05D003657 ORTHO05D004286 9.7e-27 123.6 84 69.0
ATR0618G109 Amborella trichopoda HOM05D003657 ORTHO05D004286 1.7e-26 122.9 84 71.4
Glyma.18G066900 Glycine max HOM05D003657 ORTHO05D004286 1.7e-26 122.9 84 67.9
Prupe.6G059500 Prunus persica HOM05D003657 ORTHO05D004286 1.7e-26 122.9 85 72.9
arahy.Tifrunner.gnm1.ann1.XTS0HX Arachis hypogaea HOM05D003657 ORTHO05D004286 2.2e-26 122.5 84 69.0
TPR.G21184 Trifolium pratense HOM05D003657 ORTHO05D004286 2.8e-26 122.1 84 70.2
MD03G1072700 Malus domestica HOM05D003657 ORTHO05D004286 3.7e-26 121.7 86 70.9
Nn4g24153 Nelumbo nucifera HOM05D003657 ORTHO05D004286 6.3e-26 120.9 84 72.6
RcHm_v2.0_Chr2g0157111 Rosa chinensis HOM05D003657 ORTHO05D004286 6.3e-26 120.9 85 71.8
RcHm_v2.0_Chr4g0399271 Rosa chinensis HOM05D003657 ORTHO05D004286 6.3e-26 120.9 85 71.8
Aqoxy2G02701 Aquilegia oxysepala HOM05D003657 ORTHO05D004286 8.2e-26 120.6 84 63.1
THA.LOC104800725 Tarenaya hassleriana HOM05D003657 ORTHO05D004286 8.2e-26 120.6 84 66.7
MD11G1078800 Malus domestica HOM05D003657 ORTHO05D004286 1.1e-25 120.2 86 69.8
FvH4_3g38340 Fragaria vesca HOM05D003657 ORTHO05D004286 1.4e-25 119.8 85 71.8
FAN11G3726 Fragaria x ananassa HOM05D003657 ORTHO05D004286 1.4e-25 119.8 85 71.8
FAN16G1802 Fragaria x ananassa HOM05D003657 ORTHO05D004286 1.4e-25 119.8 85 71.8
FAN25G3712 Fragaria x ananassa HOM05D003657 ORTHO05D004286 1.4e-25 119.8 85 71.8
RcHm_v2.0_Chr5g0068951 Rosa chinensis HOM05D003657 ORTHO05D004286 1.8e-25 119.4 85 71.8
Phvul.006G064300 Phaseolus vulgaris HOM05D003657 ORTHO05D004286 2.4e-25 119.0 84 66.7
VMungo0540G2171 Vigna mungo HOM05D003657 ORTHO05D004286 4.1e-25 118.2 84 67.9
Lalb_Chr04g0252271 Lupinus albus HOM05D003657 ORTHO05D004286 9.1e-25 117.1 84 65.5
FAN21G3798 Fragaria x ananassa HOM05D003657 ORTHO05D004286 1.6e-24 116.3 85 69.4
CSS0044418 Camellia sinensis var. sinensis HOM05D003657 ORTHO05D004286 4.5e-24 114.8 83 74.7
THA.LOC104816080 Tarenaya hassleriana HOM05D003657 ORTHO05D004286 5.9e-24 114.4 84 63.1
Carub.0004s1078 Capsella rubella HOM05D003657 ORTHO05D004286 7.7e-24 114.0 84 63.1
SEGI_02229 Sequoiadendron giganteum HOM05D003657 ORTHO05D004286 1.0e-23 113.6 84 66.7
Carub.0001s0657 Capsella rubella HOM05D003657 ORTHO05D004286 1.3e-23 113.2 84 61.9
AT1G07270 Arabidopsis thaliana HOM05D003657 ORTHO05D004286 1.7e-23 112.8 84 59.5
CARHR006990 Cardamine hirsuta HOM05D003657 ORTHO05D004286 3.8e-23 111.7 84 60.7
CARHR123010 Cardamine hirsuta HOM05D003657 ORTHO05D004286 3.8e-23 111.7 84 60.7
A10p05840 Brassica napus HOM05D003657 ORTHO05D004286 5.0e-23 111.3 84 60.7
BraA10t42845Z Brassica rapa HOM05D003657 ORTHO05D004286 5.0e-23 111.3 84 60.7
Sp4g12400 Schrenkiella parvula HOM05D003657 ORTHO05D004286 6.5e-23 110.9 84 60.7
SEGI_38514 Sequoiadendron giganteum HOM05D003657 ORTHO05D004286 6.5e-23 110.9 84 64.3
AagrBONN_evm.TU.Sc2ySwM_228.2818 Anthoceros agrestis HOM05D003657 ORTHO05D004286 8.5e-23 110.5 84 60.7
Aa31LG5G6800 Aethionema arabicum HOM05D003657 ORTHO05D004286 1.1e-22 110.2 84 59.5
AT2G29680 Arabidopsis thaliana HOM05D003657 ORTHO05D004286 1.1e-22 110.2 84 60.7
Aa31LG5G550 Aethionema arabicum HOM05D003657 ORTHO05D004286 1.5e-22 109.8 84 59.5
AL4G24450 Arabidopsis lyrata HOM05D003657 ORTHO05D004286 1.5e-22 109.8 84 59.5
Sc12g0000820 Simmondsia chinensis HOM05D003657 ORTHO05D004286 1.9e-22 109.4 84 63.1
AL1G17420 Arabidopsis lyrata HOM05D003657 ORTHO05D004286 3.2e-22 108.6 84 58.3
Thhalv10016540m.g Eutrema salsugineum HOM05D003657 ORTHO05D004286 4.2e-22 108.2 84 59.5
BcaB01g03143 Brassica carinata HOM05D002033 ORTHO05D002181 5.5e-22 107.8 84 58.3
BcaC01g05004 Brassica carinata HOM05D002033 ORTHO05D002181 5.5e-22 107.8 84 58.3
A03p26150 Brassica napus HOM05D002033 ORTHO05D002181 5.5e-22 107.8 84 58.3
C03p31210 Brassica napus HOM05D002033 ORTHO05D002181 5.5e-22 107.8 84 58.3
BolC3t15469H Brassica oleracea HOM05D003657 ORTHO05D004286 5.5e-22 107.8 84 58.3
BraA03t11830Z Brassica rapa HOM05D002033 ORTHO05D002181 5.5e-22 107.8 84 58.3
Pp3c2_14050 Physcomitrium patens HOM05D003657 ORTHO05D004286 5.5e-22 107.8 84 60.7
BcaC02g11054 Brassica carinata HOM05D003657 ORTHO05D004286 9.4e-22 107.1 84 58.3
C04p21110 Brassica napus HOM05D003657 ORTHO05D004286 9.4e-22 107.1 84 58.3
EL10Ac7g16143 Beta vulgaris HOM05D003657 ORTHO05D004286 2.7e-21 105.5 84 65.5
vmacro19103 Vaccinium macrocarpon HOM05D003657 ORTHO05D004286 2.3e-20 102.4 66 75.8
Ah.08g221030 Amaranthus hybridus HOM05D003657 ORTHO05D004286 1.2e-19 100.1 84 63.1
Zm00001eb367100 Zea mays HOM05D003657 ORTHO05D004286 1.2e-19 100.1 86 53.5
Os01g0856000 Oryza sativa ssp. japonica HOM05D003657 ORTHO05D004286 1.5e-19 99.8 86 53.5
AUR62020110 Chenopodium quinoa HOM05D003657 ORTHO05D004286 4.4e-19 98.2 84 60.7
SHI00483 Sapria himalayana HOM05D003657 ORTHO05D004286 4.4e-19 98.2 110 48.2
AUR62001671 Chenopodium quinoa HOM05D003657 ORTHO05D004286 5.7e-19 97.8 84 60.7
Zm00001eb147490 Zea mays HOM05D003657 ORTHO05D004286 5.7e-19 97.8 86 52.3
HPP92_015512 Vanilla planifolia HOM05D003657 ORTHO05D004286 1.7e-18 96.3 84 53.6
Hund04875 Selenicereus undatus HOM05D003657 ORTHO05D004286 2.2e-18 95.9 84 59.5
CBR_g34218 Chara braunii HOM05D003657 ORTHO05D004286 1.1e-17 93.6 84 52.4
SMO137G0247 Selaginella moellendorffii HOM05D003657 ORTHO05D004286 9.1e-17 90.5 84 50.0
Potri.001G250200 Populus trichocarpa HOM05D003657 ORTHO05D004286 1.2e-16 90.1 57 70.2
CBR_g22272 Chara braunii HOM05D003657 ORTHO05D004286 1.6e-16 89.7 84 50.0
Thecc.10G071600 Theobroma cacao HOM05D003657 ORTHO05D004286 2.7e-16 89.0 80 57.5
ECA247G3640 Erigeron canadensis HOM05D003657 ORTHO05D004286 2.9e-15 85.5 53 75.5
COL.COLO4_19124 Corchorus olitorius HOM05D003657 ORTHO05D004286 8.5e-15 84.0 50 76.0
Mapoly0042s0007 Marchantia polymorpha HOM05D003657 ORTHO05D004286 5.5e-14 81.3 84 48.8
C05p05340 Brassica napus HOM05D003657 ORTHO05D004286 9.4e-14 80.5 89 48.3
Lj4A394T19 Lonicera japonica HOM05D003657 ORTHO05D004286 2.1e-13 79.3 47 80.9
Lj4C400T2 Lonicera japonica HOM05D003657 ORTHO05D004286 2.1e-13 79.3 48 79.2
MCO07G225 Micromonas commoda HOM05D003657 ORTHO05D004286 9.8e-11 70.5 85 42.4
A05p15700 Brassica napus HOM05D003657 ORTHO05D004286 1.1e-09 67.0 54 51.9
Lj2A1080T42 Lonicera japonica HOM05D003657 ORTHO05D004286 4.5e-08 61.6 33 84.8
BolC5t29305H Brassica oleracea HOM05D003657 ORTHO05D004286 8.6e-07 57.4 38 63.2


User provided reference genes

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