Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010758 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 3.8e-70 268.1 138 100.0
CSS0012976 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 1.0e-62 243.4 140 93.6
CSS0036750 Camellia sinensis var. sinensis HOM05D005488 ORTHO05D006568 7.4e-50 200.7 139 77.7
Actinidia21613 Actinidia chinensis HOM05D005488 ORTHO05D006568 3.5e-47 191.8 141 73.8
PGSC0003DMG400001718 Solanum tuberosum HOM05D005488 ORTHO05D006568 3.5e-47 191.8 138 74.6
Nitab4.5_0005064g0040 Nicotiana tabacum HOM05D005488 ORTHO05D006568 7.7e-47 190.7 138 74.6
Cfa011024 Carpinus fangiana HOM05D005488 ORTHO05D006568 1.3e-46 189.9 138 74.6
Solyc01g088610.4 Solanum lycopersicum HOM05D005488 ORTHO05D006568 5.0e-46 188.0 138 72.5
Nitab4.5_0004088g0020 Nicotiana tabacum HOM05D005488 ORTHO05D006568 6.5e-46 187.6 138 73.9
Sc26g0001760 Simmondsia chinensis HOM05D005488 ORTHO05D006568 6.5e-46 187.6 139 72.7
Oeu012019.1 Olea europaea HOM05D002442 ORTHO05D006568 1.1e-45 186.8 138 72.5
CiPaw.14G016900 Carya illinoinensis HOM05D005488 ORTHO05D006568 1.9e-45 186.0 138 73.2
Haze_02901 Corylus avellana HOM05D005488 ORTHO05D006568 2.5e-45 185.7 135 74.1
PGR042G2970 Punica granatum HOM05D005488 ORTHO05D006568 5.5e-45 184.5 138 69.6
Sopen01g035460 Solanum pennellii HOM05D005488 ORTHO05D006568 5.5e-45 184.5 138 71.7
CAN.G756.18 Capsicum annuum HOM05D005488 ORTHO05D006568 1.6e-44 183.0 138 71.0
Potri.014G044300 Populus trichocarpa HOM05D005488 ORTHO05D006568 6.1e-44 181.0 140 71.4
Oeu034855.1 Olea europaea HOM05D005488 ORTHO05D006568 8.0e-44 180.6 138 70.3
CANSAT25G0013 Cannabis sativa HOM05D005488 ORTHO05D006568 1.4e-43 179.9 139 69.1
Nn6g33696 Nelumbo nucifera HOM05D005488 ORTHO05D006568 2.3e-43 179.1 138 69.6
PSO782G2409 Papaver somniferum HOM05D005488 ORTHO05D006568 3.0e-43 178.7 138 69.6
Manes.05G058400 Manihot esculenta HOM05D005488 ORTHO05D006568 4.0e-43 178.3 138 71.0
Prupe.2G116500 Prunus persica HOM05D005488 ORTHO05D006568 6.8e-43 177.6 139 69.8
TWI23G0236 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 8.8e-43 177.2 139 70.5
FvH4_7g08830 Fragaria vesca HOM05D005488 ORTHO05D006568 1.2e-42 176.8 139 70.5
FAN06G3564 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.2e-42 176.8 139 70.5
CiPaw.13G022100 Carya illinoinensis HOM05D005488 ORTHO05D006568 1.5e-42 176.4 138 71.0
GSVIVG01018352001 Vitis vinifera HOM05D005488 ORTHO05D006568 1.5e-42 176.4 138 68.8
DCAR_025027 Daucus carota HOM05D005488 ORTHO05D006568 4.4e-42 174.9 138 67.4
RcHm_v2.0_Chr1g0344251 Rosa chinensis HOM05D005488 ORTHO05D006568 4.4e-42 174.9 139 69.1
SGA_v2.0_scaffold52G19266 Striga asiatica HOM05D005488 ORTHO05D006568 4.4e-42 174.9 138 68.8
EL10Ac1g00715 Beta vulgaris HOM05D005488 ORTHO05D006568 5.7e-42 174.5 140 69.3
Gohir.D08G161700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 5.7e-42 174.5 138 69.6
AUR62013788 Chenopodium quinoa HOM05D005488 ORTHO05D006568 1.7e-41 172.9 140 69.3
FAN10G0732 Fragaria x ananassa HOM05D005488 ORTHO05D006568 1.7e-41 172.9 139 69.1
Gohir.A08G140700 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.2e-41 172.6 138 68.8
Peaxi162Scf00745g00015 Petunia axillaris HOM05D005488 ORTHO05D006568 2.2e-41 172.6 139 68.3
FAN01G0908 Fragaria x ananassa HOM05D005488 ORTHO05D006568 2.8e-41 172.2 139 68.3
Thecc.01G402400 Theobroma cacao HOM05D005488 ORTHO05D006568 2.8e-41 172.2 138 67.4
FAN10G4236 Fragaria x ananassa HOM05D005488 ORTHO05D006568 3.7e-41 171.8 139 69.1
PSO063G2958 Papaver somniferum HOM05D005488 ORTHO05D006568 3.7e-41 171.8 138 67.4
Cc02_g25610 Coffea canephora HOM05D005488 ORTHO05D006568 4.8e-41 171.4 139 67.6
FAN03G1834 Fragaria x ananassa HOM05D005488 ORTHO05D006568 4.8e-41 171.4 139 69.1
Aa31LG1G26190 Aethionema arabicum HOM05D005488 ORTHO05D006568 6.3e-41 171.0 138 64.5
Hund17125 Selenicereus undatus HOM05D005488 ORTHO05D006568 1.1e-40 170.2 136 65.4
Atru.chr5.75 Acer truncatum HOM05D005488 ORTHO05D006568 1.8e-40 169.5 138 64.5
AL5G42420 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 2.4e-40 169.1 138 63.8
AUR62023368 Chenopodium quinoa HOM05D005488 ORTHO05D006568 4.1e-40 168.3 140 67.1
Ciclev10022799m.g Citrus clementina HOM05D005488 ORTHO05D006568 4.1e-40 168.3 138 66.7
Gorai.004G168100 Gossypium raimondii HOM05D005488 ORTHO05D006568 4.1e-40 168.3 138 68.1
TWI14G1396 Tripterygium wilfordii HOM05D005488 ORTHO05D006568 5.4e-40 167.9 139 68.3
Aqoxy3G02564 Aquilegia oxysepala HOM05D005488 ORTHO05D006568 7.0e-40 167.5 137 66.4
ClCG05G002900 Citrullus lanatus HOM05D005488 ORTHO05D006568 7.0e-40 167.5 142 66.9
COL.COLO4_12353 Corchorus olitorius HOM05D005488 ORTHO05D006568 7.0e-40 167.5 138 67.4
MSTRG.17108 Avicennia marina HOM05D005488 ORTHO05D006568 9.1e-40 167.2 145 64.8
MD02G1223400 Malus domestica HOM05D005488 ORTHO05D006568 1.2e-39 166.8 140 68.6
Duzib138G1174 Durio zibethinus HOM05D005488 ORTHO05D006568 1.6e-39 166.4 138 66.7
MD07G1091300 Malus domestica HOM05D005488 ORTHO05D006568 1.6e-39 166.4 140 68.6
Sed0025787 Sechium edule HOM05D005488 ORTHO05D006568 1.6e-39 166.4 141 63.8
Lj3g0015162 Lotus japonicus HOM05D005488 ORTHO05D006568 2.0e-39 166.0 139 64.0
Atru.chr5.44 Acer truncatum HOM05D005488 ORTHO05D006568 2.7e-39 165.6 138 63.0
MELO3C006268.2 Cucumis melo HOM05D005488 ORTHO05D006568 2.7e-39 165.6 141 65.2
ClCG06G000860 Citrullus lanatus HOM05D005488 ORTHO05D006568 3.5e-39 165.2 138 64.5
Eucgr.D01184 Eucalyptus grandis HOM05D005488 ORTHO05D006568 5.9e-39 164.5 138 66.7
AT3G60210 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 1.3e-38 163.3 139 63.3
Lalb_Chr03g0040501 Lupinus albus HOM05D005488 ORTHO05D006568 1.3e-38 163.3 116 72.4
Carub.0005s2695 Capsella rubella HOM05D005488 ORTHO05D006568 2.9e-38 162.2 138 61.6
Medtr8g009280 Medicago truncatula HOM05D005488 ORTHO05D006568 2.9e-38 162.2 138 65.9
Phvul.010G041700 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 2.9e-38 162.2 138 63.8
CsaV3_3G010440 Cucumis sativus L. HOM05D005488 ORTHO05D006568 3.8e-38 161.8 142 65.5
Lsat_1_v5_gn_4_38520 Lactuca sativa HOM05D005488 ORTHO05D006568 3.8e-38 161.8 138 65.2
Lalb_Chr19g0126481 Lupinus albus HOM05D005488 ORTHO05D006568 3.8e-38 161.8 141 63.8
SalBow5G2779 Salvia bowleyana HOM05D005488 ORTHO05D006568 3.8e-38 161.8 138 63.0
Glyma.03G103600 Glycine max HOM05D005488 ORTHO05D006568 5.0e-38 161.4 138 63.8
AL4G43700 Arabidopsis lyrata HOM05D005488 ORTHO05D006568 8.5e-38 160.6 139 61.2
Migut.B01488 Erythranthe guttata HOM05D005488 ORTHO05D006568 8.5e-38 160.6 139 64.7
Carub.0004s2720 Capsella rubella HOM05D005488 ORTHO05D006568 1.1e-37 160.2 139 61.2
vmacro21078 Vaccinium macrocarpon HOM05D005488 ORTHO05D006568 1.1e-37 160.2 170 57.1
Psat0s4427g0080 Pisum sativum HOM05D005488 ORTHO05D006568 1.5e-37 159.8 138 61.6
Sp4g26730 Schrenkiella parvula HOM05D005488 ORTHO05D006568 1.5e-37 159.8 139 61.2
Cpa.g.sc52.71 Carica papaya HOM05D005488 ORTHO05D006568 1.9e-37 159.5 118 72.0
Migut.N01716 Erythranthe guttata HOM05D005488 ORTHO05D006568 2.5e-37 159.1 138 61.6
Ca_23141_v3 Cicer arietinum L. HOM05D005488 ORTHO05D006568 7.2e-37 157.5 139 62.6
ECA234G4156 Erigeron canadensis HOM05D005488 ORTHO05D006568 7.2e-37 157.5 140 64.3
THA.LOC104827584 Tarenaya hassleriana HOM05D005488 ORTHO05D006568 7.2e-37 157.5 137 59.9
HanXRQChr16g0522961 Helianthus annuus HOM05D005488 ORTHO05D006568 9.4e-37 157.1 141 63.8
BcaB02g08840 Brassica carinata HOM05D005488 ORTHO05D006568 1.2e-36 156.8 138 60.9
BcaC02g12287 Brassica carinata HOM05D005488 ORTHO05D006568 2.1e-36 156.0 137 60.6
C04p05600 Brassica napus HOM05D005488 ORTHO05D006568 2.1e-36 156.0 137 60.6
BolC4t22190H Brassica oleracea HOM05D005488 ORTHO05D006568 2.1e-36 156.0 137 60.6
BraA05t19455Z Brassica rapa HOM05D005488 ORTHO05D006568 2.1e-36 156.0 137 60.6
Thhalv10001677m.g Eutrema salsugineum HOM05D005488 ORTHO05D006568 4.7e-36 154.8 140 60.7
CARHR139860 Cardamine hirsuta HOM05D005488 ORTHO05D006568 6.1e-36 154.5 139 59.7
A05p04790 Brassica napus HOM05D005488 ORTHO05D006568 8.0e-36 154.1 137 59.1
arahy.Tifrunner.gnm1.ann1.LT98XL Arachis hypogaea HOM05D005488 ORTHO05D006568 1.0e-35 153.7 144 62.5
BolC4t28620H Brassica oleracea HOM05D005488 ORTHO05D006568 1.0e-35 153.7 138 60.1
VMungo0331G0633 Vigna mungo HOM05D005488 ORTHO05D006568 1.8e-35 152.9 105 73.3
AT2G44650 Arabidopsis thaliana HOM05D005488 ORTHO05D006568 2.3e-35 152.5 140 60.7
BcaC02g07105 Brassica carinata HOM05D005488 ORTHO05D006568 2.3e-35 152.5 138 59.4
BraA04t18803Z Brassica rapa HOM05D005488 ORTHO05D006568 2.3e-35 152.5 138 59.4
arahy.Tifrunner.gnm1.ann1.L23YUH Arachis hypogaea HOM05D005488 ORTHO05D006568 3.0e-35 152.1 144 61.8
unitig_26.g8858 Utricularia gibba HOM05D005488 ORTHO05D006568 3.0e-35 152.1 138 60.1
Rhsim01G0143400 Rhododendron simsii HOM05D005488 ORTHO05D006568 4.0e-35 151.8 126 68.3
Sed0000336 Sechium edule HOM05D005488 ORTHO05D006568 4.0e-35 151.8 138 58.7
MELO3C022455.2 Cucumis melo HOM05D005488 ORTHO05D006568 2.0e-34 149.4 157 56.7
CsaV3_6G006710 Cucumis sativus L. HOM05D005488 ORTHO05D001261 2.0e-34 149.4 129 63.6
ATR0665G403 Amborella trichopoda HOM05D005488 ORTHO05D006568 4.4e-34 148.3 120 65.0
Os10g0566700 Oryza sativa ssp. japonica HOM05D005488 ORTHO05D006568 5.7e-34 147.9 104 70.2
BcaB06g29391 Brassica carinata HOM05D005488 ORTHO05D006568 1.3e-33 146.7 129 59.7
TPR.G17350 Trifolium pratense HOM05D005488 ORTHO05D006568 1.7e-33 146.4 105 70.5
Dinv44023 Davidia involucrata HOM05D005488 ORTHO05D006568 3.7e-33 145.2 90 78.9
CDE04G3246 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 6.3e-33 144.4 143 55.9
CDE12G0168 Ceratophyllum demersum HOM05D005488 ORTHO05D006568 6.3e-33 144.4 144 54.9
Zm00001eb024030 Zea mays HOM05D005488 ORTHO05D006568 6.3e-33 144.4 121 65.3
Zm00001eb390720 Zea mays HOM05D005488 ORTHO05D006568 1.1e-32 143.7 120 64.2
Potri.002G135700 Populus trichocarpa HOM05D005488 ORTHO05D006568 1.8e-32 142.9 117 67.5
Sabra02G0105500 Salix brachista HOM05D005488 ORTHO05D006568 5.0e-30 134.8 210 44.8
SEGI_24977 Sequoiadendron giganteum HOM05D005488 ORTHO05D006568 1.1e-29 133.7 104 63.5
unitig_750.g28406 Utricularia gibba HOM05D005488 ORTHO05D006568 1.1e-29 133.7 140 55.0
A04p33420 Brassica napus HOM05D005488 ORTHO05D006568 1.5e-29 133.3 138 53.6
C04p71170 Brassica napus HOM05D005488 ORTHO05D006568 1.9e-29 132.9 144 54.2
HPP92_025708 Vanilla planifolia HOM05D005488 ORTHO05D006568 2.1e-28 129.4 89 69.7
AagrBONN_evm.TU.Sc2ySwM_117.3656 Anthoceros agrestis HOM05D005488 ORTHO05D006568 4.7e-28 128.3 107 57.9
Mapoly0181s0002 Marchantia polymorpha HOM05D005488 ORTHO05D006568 9.8e-26 120.6 101 59.4
SMO244G0054 Selaginella moellendorffii HOM05D005488 ORTHO05D006568 1.7e-25 119.8 89 62.9
Dinv43589 Davidia involucrata HOM05D005488 ORTHO05D006568 3.7e-25 118.6 90 75.6
Sabra14G0032200 Salix brachista HOM05D005488 ORTHO05D006568 4.9e-25 118.2 144 49.3
QL04p026246 Quercus lobata HOM05D005488 ORTHO05D006568 1.4e-24 116.7 70 80.0
Pp3c2_19170 Physcomitrium patens HOM05D005488 ORTHO05D006568 5.4e-24 114.8 130 49.2
Zm00001eb071630 Zea mays HOM05D005488 ORTHO05D006568 1.0e-22 110.5 73 75.3
Duzib133G1397 Durio zibethinus HOM05D005488 ORTHO05D006568 5.0e-22 108.2 109 60.6
Pp3c1_20880 Physcomitrium patens HOM05D005488 ORTHO05D006568 7.3e-21 104.4 96 51.0
Gohir.D07G176200 Gossypium hirsutum HOM05D005488 ORTHO05D006568 2.0e-18 96.3 74 66.2
Gorai.007G266500 Gossypium raimondii HOM05D005488 ORTHO05D006568 2.7e-15 85.9 68 63.2
MD13G1240800 Malus domestica HOM05D005488 ORTHO05D006568 2.7e-15 85.9 110 55.5
Glyma.07G120400 Glycine max HOM05D005488 ORTHO05D006568 3.9e-14 82.0 89 53.9
Phvul.006G055900 Phaseolus vulgaris HOM05D005488 ORTHO05D006568 3.1e-11 72.4 89 51.7
QL04p026254 Quercus lobata HOM05D005488 ORTHO05D006568 6.4e-09 64.7 74 50.0
Rhsim03G0098500 Rhododendron simsii HOM05D005488 ORTHO05D006568 2.7e-07 59.3 40 72.5


User provided reference genes

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