Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010735 Camellia sinensis var. sinensis HOM05D000932 ORTHO05D000729 1.6e-100 369.4 186 100.0
Actinidia00809 Actinidia chinensis HOM05D000932 ORTHO05D000729 1.5e-37 160.2 260 45.8
Actinidia03768 Actinidia chinensis HOM05D000932 ORTHO05D000729 1.3e-36 157.1 257 45.5
Dinv32825 Davidia involucrata HOM05D000932 ORTHO05D000729 2.7e-31 139.4 133 62.4
vmacro14497 Vaccinium macrocarpon HOM05D000932 ORTHO05D000729 3.6e-31 139.0 258 41.9
Rhsim01G0223700 Rhododendron simsii HOM05D000932 ORTHO05D000729 8.3e-28 127.9 259 42.9
MSTRG.21165 Avicennia marina HOM05D000932 ORTHO05D000729 2.0e-26 123.2 255 38.8
Nitab4.5_0009199g0020 Nicotiana tabacum HOM05D000932 ORTHO05D000729 7.7e-26 121.3 255 38.0
SGA_v2.0_scaffold61G21230 Striga asiatica HOM05D000932 ORTHO05D000729 1.0e-25 120.9 188 42.6
Manes.11G137200 Manihot esculenta HOM05D000932 ORTHO05D000729 1.9e-24 116.7 248 37.9
Nitab4.5_0009445g0020 Nicotiana tabacum HOM05D000932 ORTHO05D000729 7.2e-24 114.8 238 39.5
Potri.001G233600 Populus trichocarpa HOM05D000932 ORTHO05D000729 1.2e-23 114.0 185 43.2
Lj2A1045T49 Lonicera japonica HOM05D000932 ORTHO05D000729 2.1e-23 113.2 267 34.8
CiPaw.13G102500 Carya illinoinensis HOM05D000932 ORTHO05D000729 2.8e-23 112.8 229 39.7
Cc01_g12030 Coffea canephora HOM05D000932 ORTHO05D000729 8.9e-22 107.8 165 42.4
Haze_23997 Corylus avellana HOM05D000932 ORTHO05D000729 8.9e-22 107.8 263 35.7
Oeu062310.1 Olea europaea HOM05D000932 ORTHO05D000729 4.4e-21 105.5 243 36.6
GSVIVG01025065001 Vitis vinifera HOM05D000932 ORTHO05D000729 7.5e-21 104.8 264 34.8
TAR623G0516 Trochodendron aralioides HOM05D000932 ORTHO05D000729 9.8e-21 104.4 240 36.2
Aqoxy4G03107 Aquilegia oxysepala HOM05D000932 ORTHO05D000729 1.7e-20 103.6 249 35.7
Migut.D02156 Erythranthe guttata HOM05D000932 ORTHO05D000729 6.3e-20 101.7 254 36.6
SalBow3G0934 Salvia bowleyana HOM05D000932 ORTHO05D000729 1.4e-19 100.5 236 34.7
SalBow3G1225 Salvia bowleyana HOM05D000932 ORTHO05D000729 2.4e-19 99.8 238 34.5
Oeu040996.1 Olea europaea HOM05D000932 ORTHO05D000729 3.1e-19 99.4 232 36.2
Thecc.09G331400 Theobroma cacao HOM05D000932 ORTHO05D000729 3.1e-19 99.4 234 34.2
Peaxi162Scf00836g00322 Petunia axillaris HOM05D000932 ORTHO05D000729 9.2e-19 97.8 244 36.5
Ciclev10029153m.g Citrus clementina HOM05D000932 ORTHO05D000729 2.0e-18 96.7 183 38.8
Duzib168G1389 Durio zibethinus HOM05D000932 ORTHO05D000729 3.5e-18 95.9 227 34.8
TWI75G0146 Tripterygium wilfordii HOM05D000932 ORTHO05D000729 1.0e-17 94.4 255 36.1
MD11G1118000 Malus domestica HOM05D000932 ORTHO05D000729 1.3e-17 94.0 205 35.6
Oeu040265.1 Olea europaea HOM05D000932 ORTHO05D000729 1.3e-17 94.0 246 33.3
Cfa011417 Carpinus fangiana HOM05D000932 ORTHO05D000729 1.7e-17 93.6 264 34.1
MD03G1105500 Malus domestica HOM05D000932 ORTHO05D000729 1.5e-16 90.5 206 35.4
Nitab4.5_0008854g0010 Nicotiana tabacum HOM05D000932 ORTHO05D000729 4.3e-16 89.0 245 31.4
EL10Ac7g15936 Beta vulgaris HOM05D000932 ORTHO05D000729 7.3e-16 88.2 264 33.3
QL01p034599 Quercus lobata HOM05D000932 ORTHO05D000729 7.3e-16 88.2 219 34.7
TWI31G1196 Tripterygium wilfordii HOM05D000932 ORTHO05D000729 7.3e-16 88.2 226 38.5
Gorai.001G106600 Gossypium raimondii HOM05D000932 ORTHO05D000729 2.1e-15 86.7 246 30.5
PGR119G1900 Punica granatum HOM05D000932 ORTHO05D000729 2.1e-15 86.7 267 31.8
VMungo1080G1675 Vigna mungo HOM05D000932 ORTHO05D000729 2.1e-15 86.7 189 36.5
Glyma.15G219800 Glycine max HOM05D000932 ORTHO05D000729 2.8e-15 86.3 210 36.7
Glyma.13G331000 Glycine max HOM05D000932 ORTHO05D000729 4.7e-15 85.5 190 37.9
AUR62001856 Chenopodium quinoa HOM05D000932 ORTHO05D000729 6.1e-15 85.1 215 34.4
Hund05021 Selenicereus undatus HOM05D000932 ORTHO05D000729 8.0e-15 84.7 204 35.3
Gohir.D05G099200 Gossypium hirsutum HOM05D000932 ORTHO05D000729 1.4e-14 84.0 247 32.4
FAN11G1095 Fragaria x ananassa HOM05D000932 ORTHO05D000729 1.8e-14 83.6 176 35.2
Phvul.L002465 Phaseolus vulgaris HOM05D000932 ORTHO05D000729 1.8e-14 83.6 189 36.5
ClCG03G001780 Citrullus lanatus HOM05D000932 ORTHO05D000729 2.3e-14 83.2 195 33.8
FAN21G3891 Fragaria x ananassa HOM05D000932 ORTHO05D000729 5.2e-14 82.0 176 34.7
Solyc11g072850.2 Solanum lycopersicum HOM05D000932 ORTHO05D000729 5.2e-14 82.0 189 35.4
TPR.G11573 Trifolium pratense HOM05D000932 ORTHO05D000729 5.2e-14 82.0 191 35.6
FAN25G0417 Fragaria x ananassa HOM05D000932 ORTHO05D000729 6.8e-14 81.6 176 34.7
FAN16G0142 Fragaria x ananassa HOM05D000932 ORTHO05D000729 8.9e-14 81.3 176 34.1
Phvul.011G069800 Phaseolus vulgaris HOM05D000932 ORTHO05D000729 1.2e-13 80.9 182 36.8
Gorai.009G103100 Gossypium raimondii HOM05D000932 ORTHO05D000729 1.5e-13 80.5 254 32.7
Lsat_1_v5_gn_9_21300 Lactuca sativa HOM05D000932 ORTHO05D000729 2.0e-13 80.1 67 61.2
Medtr2g096080 Medicago truncatula HOM05D000932 ORTHO05D000729 2.0e-13 80.1 250 33.2
MBI14_g20929_MAGBIO Magnolia biondii HOM05D000932 ORTHO05D000729 3.4e-13 79.3 64 60.9
Medtr4g061823 Medicago truncatula HOM05D000932 ORTHO05D000729 3.4e-13 79.3 186 34.9
Medtr4g061910 Medicago truncatula HOM05D000932 ORTHO05D000729 3.4e-13 79.3 186 34.9
RcHm_v2.0_Chr5g0062181 Rosa chinensis HOM05D000932 ORTHO05D000729 3.4e-13 79.3 206 35.9
VMungo1127G0752 Vigna mungo HOM05D000932 ORTHO05D000729 3.4e-13 79.3 185 36.2
DCAR_005294 Daucus carota HOM05D000932 ORTHO05D000729 4.4e-13 79.0 225 34.2
Gohir.A05G099300 Gossypium hirsutum HOM05D000932 ORTHO05D000729 4.4e-13 79.0 254 32.3
Gorai.003G138200 Gossypium raimondii HOM05D000932 ORTHO05D000729 5.8e-13 78.6 248 33.5
Gohir.A03G036900 Gossypium hirsutum HOM05D000932 ORTHO05D000729 7.5e-13 78.2 245 33.9
CAN.G971.7 Capsicum annuum HOM05D000932 ORTHO05D000729 1.3e-12 77.4 209 33.0
Lalb_Chr03g0026971 Lupinus albus HOM05D000932 ORTHO05D000729 1.7e-12 77.0 199 34.7
Nn2g10563 Nelumbo nucifera HOM05D000932 ORTHO05D000729 1.7e-12 77.0 65 60.0
Ah.08g215020 Amaranthus hybridus HOM05D000932 ORTHO05D000729 2.2e-12 76.6 66 60.6
arahy.Tifrunner.gnm1.ann1.IR754M Arachis hypogaea HOM05D000932 ORTHO05D000729 2.2e-12 76.6 246 32.1
AUR62009650 Chenopodium quinoa HOM05D000932 ORTHO05D000729 2.9e-12 76.3 245 30.6
Sed0019895 Sechium edule HOM05D000932 ORTHO05D000729 2.9e-12 76.3 236 32.6
Gohir.D03G131400 Gossypium hirsutum HOM05D000932 ORTHO05D000729 3.7e-12 75.9 248 33.1
Lj3g0021931 Lotus japonicus HOM05D000932 ORTHO05D000729 4.9e-12 75.5 230 33.5
Sopen11g030520 Solanum pennellii HOM05D000932 ORTHO05D000729 6.4e-12 75.1 72 52.8
PGSC0003DMG400015524 Solanum tuberosum HOM05D000932 ORTHO05D000729 6.4e-12 75.1 72 52.8
Glyma.11G146690 Glycine max HOM05D000932 ORTHO05D000729 8.3e-12 74.7 188 34.0
Duzib170G0631 Durio zibethinus HOM05D000932 ORTHO05D000729 1.9e-11 73.6 243 30.0
Hund18947 Selenicereus undatus HOM05D000932 ORTHO05D000729 1.9e-11 73.6 81 55.6
arahy.Tifrunner.gnm1.ann1.3QBB6E Arachis hypogaea HOM05D000932 ORTHO05D000729 2.4e-11 73.2 190 34.7
Hma1.2p1_0035F.1_g021790 Hydrangea macrophylla HOM05D000932 ORTHO05D000729 3.2e-11 72.8 159 37.7
CANSAT54G2797 Cannabis sativa HOM05D000932 ORTHO05D000729 4.1e-11 72.4 226 31.0
Ca_01362_v3 Cicer arietinum L. HOM05D000932 ORTHO05D000729 4.1e-11 72.4 208 33.7
Psat5g282000 Pisum sativum HOM05D000932 ORTHO05D000729 4.1e-11 72.4 210 33.8
CsaV3_1G033810 Cucumis sativus L. HOM05D000932 ORTHO05D000729 7.0e-11 71.6 227 31.7
Lj3g0019030 Lotus japonicus HOM05D000932 ORTHO05D000729 7.0e-11 71.6 60 55.0
TPR.G2974 Trifolium pratense HOM05D000932 ORTHO05D000729 7.0e-11 71.6 63 58.7
DCAR_006019 Daucus carota HOM05D000932 ORTHO05D000729 9.2e-11 71.2 66 57.6
MELO3C020684.2 Cucumis melo HOM05D000932 ORTHO05D000729 2.0e-10 70.1 182 34.1
SHI05990 Sapria himalayana HOM05D000932 ORTHO05D000729 2.0e-10 70.1 155 33.5
ClCG02G020570 Citrullus lanatus HOM05D000932 ORTHO05D000729 2.7e-10 69.7 79 53.2
arahy.Tifrunner.gnm1.ann1.KU7VJQ Arachis hypogaea HOM05D000932 ORTHO05D000729 3.5e-10 69.3 78 52.6
HanXRQChr08g0230561 Helianthus annuus HOM05D000932 ORTHO05D000729 4.6e-10 68.9 67 58.2
Carub.0008s2069 Capsella rubella HOM05D000932 ORTHO05D000729 7.8e-10 68.2 213 33.3
SalBow3G2952 Salvia bowleyana HOM05D000932 ORTHO05D000729 3.0e-09 66.2 181 32.0
Ah.15g096310 Amaranthus hybridus HOM05D000932 ORTHO05D000729 5.0e-09 65.5 248 30.6
Dinv06294 Davidia involucrata HOM05D000932 ORTHO05D000729 5.0e-09 65.5 82 52.4
Glyma.12G074400 Glycine max HOM05D000932 ORTHO05D000729 5.0e-09 65.5 240 29.6
AT5G59990 Arabidopsis thaliana HOM05D000932 ORTHO05D000729 6.6e-09 65.1 188 33.0
Aa31LG1G12120 Aethionema arabicum HOM05D000932 ORTHO05D000729 8.6e-09 64.7 59 59.3
BcaB05g22601 Brassica carinata HOM05D000932 ORTHO05D000729 8.6e-09 64.7 188 33.5
Sc12g0001850 Simmondsia chinensis HOM05D000932 ORTHO05D000729 8.6e-09 64.7 73 46.6
C02p11960 Brassica napus HOM05D000932 ORTHO05D000729 1.1e-08 64.3 59 57.6
BraA02t05749Z Brassica rapa HOM05D000932 ORTHO05D000729 1.1e-08 64.3 59 57.6
Lalb_Chr24g0394321 Lupinus albus HOM05D000932 ORTHO05D000729 2.5e-08 63.2 148 33.8
THA.LOC104799467 Tarenaya hassleriana HOM05D000932 ORTHO05D000729 3.3e-08 62.8 59 54.2
Ca_24547_v3 Cicer arietinum L. HOM05D000932 ORTHO05D000729 5.6e-08 62.0 69 46.4
AL8G36560 Arabidopsis lyrata HOM05D000932 ORTHO05D000729 7.3e-08 61.6 188 32.4
BcaB08g36204 Brassica carinata HOM05D000932 ORTHO05D000729 7.3e-08 61.6 59 54.2
A10p17200 Brassica napus HOM05D000932 ORTHO05D000729 7.3e-08 61.6 59 57.6
BolC2t07295H Brassica oleracea HOM05D000932 ORTHO05D000729 7.3e-08 61.6 191 33.5
BraA10t43801Z Brassica rapa HOM05D000932 ORTHO05D000729 7.3e-08 61.6 59 57.6
BcaC04g19654 Brassica carinata HOM05D000932 ORTHO05D000729 2.1e-07 60.1 59 52.5
C09p52490 Brassica napus HOM05D000932 ORTHO05D000729 2.1e-07 60.1 59 52.5
BolC9t58116H Brassica oleracea HOM05D000932 ORTHO05D000729 2.1e-07 60.1 59 52.5
Aa31LG5G3960 Aethionema arabicum HOM05D000932 ORTHO05D000729 2.8e-07 59.7 45 66.7
arahy.Tifrunner.gnm1.ann1.AE0X9Y Arachis hypogaea HOM05D000932 ORTHO05D000729 2.8e-07 59.7 203 32.5
MELO3C025709.2 Cucumis melo HOM05D000932 ORTHO05D000729 2.8e-07 59.7 84 46.4
Nitab4.5_0001980g0100 Nicotiana tabacum HOM05D000932 ORTHO05D000729 3.6e-07 59.3 69 47.8
Thhalv10014534m.g Eutrema salsugineum HOM05D000932 ORTHO05D000729 4.7e-07 58.9 190 32.6
Sp6g21660 Schrenkiella parvula HOM05D000932 ORTHO05D000729 4.7e-07 58.9 188 31.4
Sed0007122 Sechium edule HOM05D000932 ORTHO05D000729 4.7e-07 58.9 67 50.7
ECA240G4070 Erigeron canadensis HOM05D000932 ORTHO05D000729 1.4e-06 57.4 70 45.7
HanXRQChr03g0085921 Helianthus annuus HOM05D000932 ORTHO05D000729 1.4e-06 57.4 61 45.9
MBI04_g00371_MAGBIO Magnolia biondii HOM05D000932 ORTHO05D000729 2.3e-06 56.6 61 42.6
Migut.N00298 Erythranthe guttata HOM05D000932 ORTHO05D000729 3.1e-06 56.2 44 56.8
PSO832G0188 Papaver somniferum HOM05D000932 ORTHO05D000729 3.1e-06 56.2 72 52.8
Peaxi162Scf00169g00319 Petunia axillaris HOM05D000932 ORTHO05D000729 3.1e-06 56.2 44 59.1
Oeu064853.1 Olea europaea HOM05D000932 ORTHO05D011387 5.2e-06 55.5 55 52.7
Nn1g02951 Nelumbo nucifera HOM05D000932 ORTHO05D000729 6.8e-06 55.1 61 45.9
PSO384G2834 Papaver somniferum HOM05D000932 ORTHO05D000729 6.8e-06 55.1 139 33.1
THA.LOC104817876 Tarenaya hassleriana HOM05D000932 ORTHO05D000729 6.8e-06 55.1 61 45.9
BcaB07g31549 Brassica carinata HOM05D000932 ORTHO05D000729 8.9e-06 54.7 62 48.4
CARHR003840 Cardamine hirsuta HOM05D000932 ORTHO05D000729 8.9e-06 54.7 46 65.2
FAN26G2342 Fragaria x ananassa HOM05D000932 ORTHO05D000729 8.9e-06 54.7 71 45.1
Lsat_1_v5_gn_6_85380 Lactuca sativa HOM05D000932 ORTHO05D000729 8.9e-06 54.7 83 36.1
PSO063G6721 Papaver somniferum HOM05D000932 ORTHO05D000729 8.9e-06 54.7 72 51.4
PSO339G4745 Papaver somniferum HOM05D000932 ORTHO05D000729 8.9e-06 54.7 141 32.6
SHI00844 Sapria himalayana HOM05D000932 ORTHO05D000729 8.9e-06 54.7 62 46.8
TWI09G1141 Tripterygium wilfordii HOM05D000932 ORTHO05D000729 8.9e-06 54.7 75 45.3


User provided reference genes

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