Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010718 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D043285 2.4e-96 355.5 181 100.0
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 2.4e-24 116.3 153 49.7
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 9.2e-24 114.4 153 50.3
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 2.1e-23 113.2 162 46.3
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 3.5e-23 112.5 153 46.4
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 4.6e-23 112.1 153 49.7
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.7e-22 110.2 155 48.4
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 3.0e-22 109.4 153 47.7
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 5.1e-22 108.6 153 45.1
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 8.6e-22 107.8 153 45.8
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 1.1e-21 107.5 153 45.1
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 1.5e-21 107.1 153 47.1
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 1.5e-21 107.1 153 43.1
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 1.9e-21 106.7 160 45.0
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 2.5e-21 106.3 162 42.6
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 3.3e-21 105.9 159 44.7
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 3.3e-21 105.9 159 44.7
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 4.3e-21 105.5 166 45.8
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 4.3e-21 105.5 155 46.5
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 5.6e-21 105.1 162 41.4
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 7.3e-21 104.8 162 42.0
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 9.5e-21 104.4 153 45.8
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.2e-20 104.0 156 44.2
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 1.2e-20 104.0 153 48.4
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 1.2e-20 104.0 153 43.1
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.6e-20 103.6 153 45.8
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 1.6e-20 103.6 162 42.6
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 2.1e-20 103.2 153 45.8
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 3.6e-20 102.4 153 45.1
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 3.6e-20 102.4 162 42.0
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 3.6e-20 102.4 153 44.4
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 3.6e-20 102.4 156 47.4
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 3.6e-20 102.4 156 47.4
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 4.7e-20 102.1 162 42.6
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 6.2e-20 101.7 162 41.4
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 6.2e-20 101.7 155 43.2
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 6.2e-20 101.7 162 41.4
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 1.1e-19 100.9 155 45.8
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 1.1e-19 100.9 153 43.8
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 1.1e-19 100.9 153 43.1
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 1.4e-19 100.5 159 41.5
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 1.4e-19 100.5 153 44.4
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 1.4e-19 100.5 153 45.1
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 1.4e-19 100.5 153 45.1
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 1.8e-19 100.1 153 45.1
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 1.8e-19 100.1 153 41.8
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 1.8e-19 100.1 162 41.4
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 1.8e-19 100.1 162 41.4
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 1.8e-19 100.1 155 43.9
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 2.3e-19 99.8 156 44.9
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 2.3e-19 99.8 153 43.8
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 2.3e-19 99.8 156 44.2
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 3.1e-19 99.4 153 42.5
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 3.1e-19 99.4 154 44.2
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 4.0e-19 99.0 153 43.1
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 4.0e-19 99.0 162 40.7
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 5.2e-19 98.6 153 42.5
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 5.2e-19 98.6 153 43.1
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 5.2e-19 98.6 153 43.8
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.2e-19 98.6 153 43.8
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 5.2e-19 98.6 153 43.8
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 6.8e-19 98.2 157 42.0
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 8.9e-19 97.8 156 41.7
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 8.9e-19 97.8 162 40.1
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 8.9e-19 97.8 155 43.9
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 8.9e-19 97.8 155 43.2
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 1.5e-18 97.1 159 41.5
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 1.5e-18 97.1 153 41.2
GSVIVG01002244001 Vitis vinifera HOM05D002352 ORTHO05D003724 1.5e-18 97.1 153 43.8
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.0e-18 96.7 153 42.5
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 2.0e-18 96.7 153 41.2
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 2.0e-18 96.7 153 41.2
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.6e-18 96.3 153 42.5
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.6e-18 96.3 153 42.5
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 3.4e-18 95.9 154 42.2
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 3.4e-18 95.9 153 42.5
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 3.4e-18 95.9 153 42.5
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 3.4e-18 95.9 153 40.5
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 4.4e-18 95.5 162 40.1
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 5.8e-18 95.1 127 44.1
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 7.5e-18 94.7 141 46.1
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 7.5e-18 94.7 162 40.1
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 7.5e-18 94.7 162 40.1
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 9.9e-18 94.4 162 40.1
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 1.3e-17 94.0 156 40.4
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 1.3e-17 94.0 153 40.5
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 1.7e-17 93.6 153 40.5
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 2.9e-17 92.8 153 40.5
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 2.9e-17 92.8 162 40.1
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 2.9e-17 92.8 153 41.8
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 3.7e-17 92.4 156 39.7
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 3.7e-17 92.4 156 39.7
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 3.7e-17 92.4 162 38.3
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 4.9e-17 92.0 162 40.1
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 4.9e-17 92.0 153 40.5
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 4.9e-17 92.0 153 41.2
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 1.1e-16 90.9 156 39.1
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 4.1e-16 89.0 156 39.1
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 5.4e-16 88.6 156 38.5
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 1.6e-15 87.0 156 38.5
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 4.6e-15 85.5 156 37.8
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 4.6e-15 85.5 156 37.8
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 6.0e-15 85.1 156 37.8
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 7.8e-15 84.7 156 37.2
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 7.8e-15 84.7 156 37.2
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 7.8e-15 84.7 48 77.1
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 7.8e-15 84.7 48 70.8
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 1.0e-14 84.3 153 37.3
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 2.3e-14 83.2 153 36.6
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 2.3e-14 83.2 153 36.6
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 2.3e-14 83.2 153 36.6
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 2.3e-14 83.2 153 36.6
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 2.3e-14 83.2 153 36.6
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 3.0e-14 82.8 180 35.0
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 6.6e-14 81.6 140 39.3
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 8.6e-14 81.3 163 38.0
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 2.5e-13 79.7 143 41.3
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 2.5e-13 79.7 163 35.0
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 2.5e-13 79.7 153 34.0
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 3.3e-13 79.3 155 36.8
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 7.3e-13 78.2 153 33.3
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 1.6e-12 77.0 163 36.8
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 2.8e-12 76.3 154 36.4
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 4.7e-12 75.5 156 38.5
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 6.8e-11 71.6 158 34.2
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 8.9e-11 71.2 153 35.3
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 1.2e-10 70.9 153 32.0
SHI23482 Sapria himalayana HOM05D002352 ORTHO05D043285 2.0e-10 70.1 48 64.6
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 1.6e-07 60.5 162 30.2
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 2.3e-06 56.6 177 27.7


User provided reference genes

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