Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 0.0e+00 1277.7 671 100.0
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 0.0e+00 1268.8 671 99.1
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 3.2e-311 1071.2 668 86.4
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 4.4e-289 997.7 655 83.5
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 5.4e-287 990.7 792 71.8
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 2.7e-286 988.4 678 79.8
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 4.0e-282 974.5 618 85.0
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 2.3e-277 958.7 676 76.8
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.8e-274 949.1 676 75.9
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 4.0e-274 948.0 676 74.4
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 8.9e-274 946.8 673 76.8
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 9.2e-271 936.8 676 75.6
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 4.6e-270 934.5 703 70.6
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 2.3e-269 932.2 677 76.5
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 2.3e-269 932.2 677 76.5
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 6.6e-269 930.6 676 76.3
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 6.6e-269 930.6 669 77.3
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 1.2e-265 919.8 673 74.9
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 9.9e-265 916.8 673 75.6
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 4.2e-263 911.4 664 75.2
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 4.2e-263 911.4 675 74.8
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 1.0e-261 906.7 678 73.9
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 6.6e-261 904.0 699 73.7
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.1e-260 903.3 685 72.1
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 1.3e-259 899.8 675 74.2
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 6.2e-259 897.5 681 73.7
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 3.1e-258 895.2 676 73.4
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 4.0e-258 894.8 665 74.3
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 1.5e-257 892.9 675 72.7
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 2.0e-257 892.5 675 73.6
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 5.8e-257 891.0 640 76.1
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 4.2e-255 884.8 665 74.1
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 7.1e-255 884.0 669 73.7
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 3.5e-254 881.7 633 75.2
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 3.5e-254 881.7 674 72.3
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 1.8e-250 869.4 673 72.5
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.0e-249 865.9 678 70.4
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 4.5e-249 864.8 680 71.5
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 5.8e-249 864.4 656 73.2
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 7.6e-249 864.0 675 73.9
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 9.9e-249 863.6 673 71.9
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 1.7e-248 862.8 636 74.4
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 2.2e-248 862.4 670 72.8
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 1.1e-247 860.1 678 71.4
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 1.3e-245 853.2 677 71.2
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 6.7e-245 850.9 677 72.5
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 6.7e-245 850.9 735 64.2
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 2.1e-243 845.9 671 72.0
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.1e-242 843.6 682 69.9
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 1.8e-242 842.8 688 69.5
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.2e-241 840.1 735 66.7
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 1.3e-240 836.6 669 72.0
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 4.9e-240 834.7 652 72.2
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 3.2e-239 832.0 614 74.8
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 2.3e-237 825.9 671 68.4
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 1.9e-236 822.8 661 70.7
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 4.3e-236 821.6 646 71.2
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.6e-235 819.7 674 68.8
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.4e-234 816.6 640 70.3
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 3.1e-234 815.5 674 68.5
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 2.0e-233 812.8 679 65.5
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.0e-232 810.4 540 81.9
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 1.1e-231 807.0 618 73.8
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 5.5e-231 804.7 684 67.4
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 1.2e-230 803.5 559 80.1
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 7.9e-230 800.8 685 67.2
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.2e-227 792.7 602 73.8
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 8.5e-224 780.8 586 75.1
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 7.2e-223 777.7 625 70.7
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 5.1e-221 771.5 669 68.2
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 2.2e-219 766.1 677 66.5
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 4.1e-218 761.9 663 66.4
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 5.3e-218 761.5 671 62.9
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 1.3e-216 756.9 700 65.4
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 1.1e-215 753.8 672 65.2
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 4.7e-214 748.4 677 62.3
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 7.4e-212 741.1 494 83.2
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 8.2e-211 737.6 673 65.1
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 2.0e-209 733.0 670 63.9
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 2.6e-209 732.6 667 64.3
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 7.7e-209 731.1 678 63.9
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 1.0e-208 730.7 669 64.0
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 1.0e-208 730.7 669 64.0
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 1.3e-208 730.3 672 63.7
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 8.5e-208 727.6 670 63.9
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 8.5e-208 727.6 670 63.9
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 8.5e-208 727.6 670 63.9
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 2.5e-207 726.1 673 60.8
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 4.0e-205 718.8 525 75.6
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 4.4e-204 715.3 672 62.5
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 4.4e-204 715.3 672 62.5
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 1.1e-199 700.7 452 83.2
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.2e-199 699.1 611 63.5
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 2.2e-195 686.4 695 59.9
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 2.8e-195 686.0 629 64.2
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 8.6e-192 674.5 652 61.8
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.2e-187 659.8 614 60.7
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 2.7e-185 652.9 670 58.1
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.3e-184 650.6 722 53.9
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.8e-181 640.2 673 56.3
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.2e-180 637.5 611 58.6
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 6.0e-177 625.2 653 59.3
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 3.0e-176 622.9 610 60.5
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 3.7e-171 605.9 672 56.8
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 4.4e-164 582.4 466 66.5
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 4.9e-163 578.9 413 77.2
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 8.6e-160 568.2 658 53.3
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 5.3e-141 505.8 442 67.0
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 4.8e-134 482.6 678 47.3
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 2.1e-129 467.2 695 44.0
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 4.8e-126 456.1 502 57.6
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 2.6e-124 450.3 578 48.8
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 5.5e-114 416.0 313 78.9
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 8.8e-112 408.7 554 46.9
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 6.3e-110 402.5 725 40.3
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 6.5e-107 392.5 285 81.8
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 3.2e-98 363.6 561 44.7
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 7.5e-79 299.3 310 60.3
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.5e-74 284.3 291 56.7
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 5.9e-68 263.1 180 86.1
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.1e-64 250.8 332 43.4
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 9.8e-63 245.7 321 46.4
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 9.8e-63 245.7 200 63.5
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 1.1e-61 242.3 299 56.9
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 6.6e-59 233.0 301 51.5
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 5.6e-58 229.9 230 67.4
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.6e-55 221.1 289 42.9
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 2.1e-52 211.5 271 51.3
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.0e-51 209.1 199 73.9
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 1.2e-47 195.7 151 71.5
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 3.2e-45 187.6 208 49.0
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 2.3e-43 181.4 168 56.0
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 3.3e-42 177.6 103 93.2
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 4.6e-36 157.1 83 88.0
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 4.4e-31 140.6 252 38.5
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.8e-24 118.6 89 77.5
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.9e-21 108.6 121 44.6
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 9.3e-21 106.3 59 83.1
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.7e-20 104.8 119 53.8
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 8.7e-19 99.8 310 27.1
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 2.1e-17 95.1 63 68.3
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 6.9e-16 90.1 51 86.3
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 4.5e-15 87.4 91 48.4
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 4.5e-15 87.4 91 48.4
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 4.9e-14 84.0 58 69.0
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 4.9e-14 84.0 58 69.0
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 1.1e-13 82.8 102 53.9
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 3.2e-13 81.3 75 58.7
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 2.3e-11 75.1 53 62.3
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 8.7e-11 73.2 56 62.5
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 3.3e-10 71.2 166 33.7
Lsat_1_v5_gn_5_81581 Lactuca sativa HOM05D004640 ORTHO05D005489 1.6e-09 68.9 94 42.6
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 7.6e-07 60.1 62 53.2
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 1.0e-06 59.7 36 86.1
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.3e-06 59.3 32 90.6
SEGI_15466 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 1.3e-06 59.3 139 28.1
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.2e-06 58.5 34 88.2
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 3.8e-06 57.8 58 55.2


User provided reference genes

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