Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 2.8e-97 358.6 179 100.0
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 5.1e-83 311.2 179 88.3
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 1.3e-81 306.6 179 85.5
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 8.1e-81 303.9 179 84.4
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 5.8e-79 297.7 180 83.9
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 4.9e-78 294.7 179 82.7
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 2.1e-76 289.3 178 79.8
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.7e-75 286.2 179 79.3
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 2.3e-75 285.8 179 81.0
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 3.0e-75 285.4 179 78.2
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 5.1e-75 284.6 179 77.7
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 8.7e-75 283.9 179 79.3
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.1e-74 283.5 179 78.8
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.5e-74 283.1 181 77.9
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 1.9e-74 282.7 178 78.7
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 1.9e-74 282.7 179 77.1
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 4.3e-74 281.6 179 80.4
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 4.3e-74 281.6 179 77.7
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 4.3e-74 281.6 175 80.0
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 4.3e-74 281.6 180 78.9
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.3e-73 280.0 179 76.5
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 6.2e-73 277.7 179 78.2
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 8.1e-73 277.3 179 77.7
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 8.1e-73 277.3 179 77.7
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 8.1e-73 277.3 178 79.2
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 8.1e-73 277.3 179 76.5
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.4e-72 276.6 221 67.4
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 1.8e-72 276.2 179 76.5
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 1.8e-72 276.2 178 75.8
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 4.0e-72 275.0 173 78.6
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 4.0e-72 275.0 178 75.3
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 6.9e-72 274.2 179 77.1
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 6.9e-72 274.2 179 76.0
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 9.0e-72 273.9 179 76.0
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 1.2e-71 273.5 179 75.4
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 1.5e-71 273.1 178 77.0
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.6e-71 272.3 175 77.7
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 2.6e-71 272.3 180 76.7
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 2.6e-71 272.3 178 77.0
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 4.5e-71 271.6 179 73.7
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 7.6e-71 270.8 178 74.2
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 7.6e-71 270.8 169 80.5
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 9.9e-71 270.4 179 76.5
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 9.9e-71 270.4 179 78.2
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 1.3e-70 270.0 179 76.0
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.2e-70 269.2 179 74.9
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.2e-70 269.2 179 74.9
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 2.9e-70 268.9 179 76.0
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 3.8e-70 268.5 179 76.0
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 4.9e-70 268.1 178 75.3
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 6.4e-70 267.7 179 73.7
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 8.4e-70 267.3 176 76.7
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 8.4e-70 267.3 179 74.9
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 8.4e-70 267.3 179 75.4
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 1.1e-69 266.9 179 74.9
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 1.1e-69 266.9 179 73.7
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.9e-69 266.2 179 74.3
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 1.9e-69 266.2 179 76.0
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 1.9e-69 266.2 179 75.4
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 1.9e-69 266.2 179 74.3
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 2.4e-69 265.8 180 75.0
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.2e-69 265.4 179 73.7
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.2e-69 265.4 179 73.7
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 3.2e-69 265.4 179 74.3
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 3.2e-69 265.4 179 74.3
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 4.2e-69 265.0 179 73.2
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 5.4e-69 264.6 179 73.2
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 5.4e-69 264.6 169 77.5
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 7.1e-69 264.2 179 73.7
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 7.1e-69 264.2 179 75.4
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 1.2e-68 263.5 179 72.6
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 1.2e-68 263.5 179 74.3
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 1.6e-68 263.1 179 75.4
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 2.1e-68 262.7 179 74.3
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 2.7e-68 262.3 179 72.1
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 6.0e-68 261.2 179 74.3
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 7.9e-68 260.8 180 74.4
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 1.3e-67 260.0 177 75.1
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.3e-67 259.2 179 72.6
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 3.0e-67 258.8 169 76.3
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 3.0e-67 258.8 179 73.7
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 3.9e-67 258.5 178 72.5
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 3.9e-67 258.5 179 75.4
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 5.1e-67 258.1 179 74.3
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 8.7e-67 257.3 179 73.2
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 1.1e-66 256.9 179 71.5
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 1.1e-66 256.9 193 68.9
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 1.5e-66 256.5 168 76.2
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 1.9e-66 256.1 171 76.6
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 1.9e-66 256.1 168 75.6
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 7.4e-66 254.2 207 67.1
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 2.1e-65 252.7 179 71.5
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 3.7e-65 251.9 179 71.5
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 4.8e-65 251.5 179 69.8
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 6.2e-65 251.1 157 80.9
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 1.1e-64 250.4 179 70.9
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 1.1e-64 250.4 172 76.7
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 1.1e-64 250.4 175 73.1
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 9.0e-64 247.3 171 72.5
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 9.0e-64 247.3 175 70.9
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 9.0e-64 247.3 169 74.6
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 5.8e-63 244.6 178 70.8
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 7.6e-63 244.2 179 69.8
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.3e-62 243.4 212 63.2
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 1.7e-62 243.0 179 66.5
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.7e-62 243.0 177 69.5
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 2.2e-62 242.7 174 71.3
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 6.5e-62 241.1 160 75.6
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 6.5e-62 241.1 182 67.0
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 1.9e-61 239.6 178 69.1
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 3.2e-61 238.8 169 71.0
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 3.2e-61 238.8 167 72.5
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 3.2e-61 238.8 169 71.0
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 4.2e-61 238.4 169 71.6
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 5.5e-61 238.0 169 72.8
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 7.1e-61 237.7 169 70.4
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 1.2e-60 236.9 174 67.8
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 1.2e-60 236.9 169 71.0
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 1.2e-60 236.9 175 68.0
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 2.7e-60 235.7 174 67.8
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 2.3e-59 232.6 176 69.9
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 6.2e-57 224.6 178 66.9
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 7.6e-55 217.6 169 65.1
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 1.7e-54 216.5 146 74.7
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 2.2e-54 216.1 150 74.7
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 6.5e-54 214.5 150 74.0
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 2.5e-53 212.6 179 64.2
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.0e-51 205.7 170 67.1
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 1.1e-48 197.2 120 85.0
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 4.5e-47 191.8 129 79.1
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 4.6e-44 181.8 162 54.9
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 5.1e-43 178.3 169 59.8
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 5.1e-43 178.3 117 80.3
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 1.5e-42 176.8 168 51.8
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 1.5e-42 176.8 165 54.5
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 4.3e-42 175.3 162 53.1
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 1.3e-41 173.7 171 50.9
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 4.8e-41 171.8 114 78.1
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 1.9e-37 159.8 105 73.3
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 9.4e-37 157.5 158 57.0
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 7.9e-36 154.5 222 41.9
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 4.4e-34 148.7 200 49.0
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 9.7e-34 147.5 173 50.9
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 2.4e-32 142.9 83 83.1
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 5.3e-32 141.7 161 47.8
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 7.7e-31 137.9 163 45.4
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.0e-30 137.5 93 68.8
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.5e-29 133.7 94 68.1
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 4.2e-29 132.1 86 79.1
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 1.2e-28 130.6 83 79.5
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.0e-27 127.5 83 75.9
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 3.0e-27 125.9 87 72.4
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 8.8e-27 124.4 142 50.7
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 1.7e-25 120.2 116 60.3
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 1.2e-23 114.0 85 64.7
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 7.7e-23 111.3 75 74.7
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 1.7e-22 110.2 97 57.7
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 1.2e-20 104.0 144 47.9
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 2.0e-15 86.7 56 69.6
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 5.5e-13 78.6 217 32.3
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 5.5e-13 78.6 58 62.1
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 9.4e-13 77.8 146 36.3
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 2.0e-10 70.1 42 71.4
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 2.6e-10 69.7 85 48.2
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 3.4e-10 69.3 44 70.5


User provided reference genes

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