Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010691 Camellia sinensis var. sinensis HOM05D006340 ORTHO05D007568 1.5e-260 902.9 658 100.0
Actinidia35518 Actinidia chinensis HOM05D006340 ORTHO05D007568 1.4e-183 647.1 661 81.2
Actinidia16863 Actinidia chinensis HOM05D006340 ORTHO05D007568 3.0e-173 612.8 688 67.9
TAR362G0132 Trochodendron aralioides HOM05D006340 ORTHO05D007568 2.0e-161 573.5 662 73.7
QL03p014074 Quercus lobata HOM05D006340 ORTHO05D007568 4.5e-161 572.4 659 76.3
Dinv30898 Davidia involucrata HOM05D006340 ORTHO05D007568 6.9e-154 548.5 660 54.1
vmacro01568 Vaccinium macrocarpon HOM05D006340 ORTHO05D007568 2.2e-152 543.5 662 65.1
Hma1.2p1_0008F-1.1_g005560 Hydrangea macrophylla HOM05D006340 ORTHO05D007568 5.1e-149 532.3 660 74.5
Rhsim11G0096500 Rhododendron simsii HOM05D006340 ORTHO05D007568 4.4e-148 529.3 660 69.1
Cfa006707 Carpinus fangiana HOM05D006340 ORTHO05D007568 5.0e-144 515.8 660 72.1
CiPaw.07G030100 Carya illinoinensis HOM05D006340 ORTHO05D007568 1.8e-138 497.3 660 71.8
Haze_04056 Corylus avellana HOM05D006340 ORTHO05D007568 1.3e-136 491.1 661 66.9
Potri.013G008200 Populus trichocarpa HOM05D006340 ORTHO05D007568 3.6e-134 483.0 657 70.2
Thecc.05G323700 Theobroma cacao HOM05D006340 ORTHO05D007568 1.8e-133 480.7 655 69.0
TAR633G1326 Trochodendron aralioides HOM05D006340 ORTHO05D007568 2.2e-131 473.8 674 67.7
DCAR_025287 Daucus carota HOM05D006340 ORTHO05D007568 1.1e-130 471.5 654 69.0
Atru.chr2.357 Acer truncatum HOM05D006340 ORTHO05D007568 4.1e-130 469.5 663 68.9
Prupe.6G312400 Prunus persica HOM05D006340 ORTHO05D007568 1.2e-129 468.0 661 69.4
GSVIVG01031248001 Vitis vinifera HOM05D006340 ORTHO05D007568 5.0e-128 462.6 659 69.3
Lju926C5T2 Lonicera japonica HOM05D006340 ORTHO05D007568 1.1e-127 461.5 656 63.1
Ciclev10000538m.g Citrus clementina HOM05D006340 ORTHO05D007568 1.5e-127 461.1 656 69.1
Dinv24462 Davidia involucrata HOM05D006340 ORTHO05D007568 2.5e-127 460.3 359 68.5
TWI36G0703 Tripterygium wilfordii HOM05D006340 ORTHO05D007568 8.8e-125 451.8 656 70.1
Sabra13G0006900 Salix brachista HOM05D006340 ORTHO05D007568 1.3e-123 448.0 666 59.3
Duzib177G0712 Durio zibethinus HOM05D006340 ORTHO05D007568 4.9e-123 446.0 655 68.1
Potri.005G013000 Populus trichocarpa HOM05D006340 ORTHO05D007568 9.2e-122 441.8 655 67.9
Nn3g21728 Nelumbo nucifera HOM05D006340 ORTHO05D007568 7.7e-121 438.7 663 67.3
Manes.09G177400 Manihot esculenta HOM05D006340 ORTHO05D007568 1.0e-120 438.3 655 60.9
MBI18_g32031_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 1.3e-120 438.0 677 52.4
Cpa.g.sc48.167 Carica papaya HOM05D006340 ORTHO05D007568 3.3e-119 433.3 655 67.3
CiPaw.08G154900 Carya illinoinensis HOM05D006340 ORTHO05D007568 1.2e-118 431.4 659 68.7
Cc02_g35160 Coffea canephora HOM05D006340 ORTHO05D007568 2.3e-117 427.2 657 60.7
Lj5C328T5 Lonicera japonica HOM05D006340 ORTHO05D007568 5.7e-116 422.5 658 62.9
MD00G1208300 Malus domestica HOM05D006340 ORTHO05D007568 9.2e-114 415.2 658 65.7
CsaV3_2G007150 Cucumis sativus L. HOM05D006340 ORTHO05D007568 1.1e-111 408.3 642 65.4
MBI19_g03242_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 3.3e-111 406.8 665 55.9
CANSAT54G2981 Cannabis sativa HOM05D006340 ORTHO05D007568 1.2e-110 404.8 659 66.9
Sed0011043 Sechium edule HOM05D006340 ORTHO05D007568 1.2e-110 404.8 661 64.8
COL.COLO4_05545 Corchorus olitorius HOM05D006340 ORTHO05D007568 2.8e-110 403.7 658 65.7
MD12G1205300 Malus domestica HOM05D006340 ORTHO05D007568 3.1e-109 400.2 659 64.8
Duzib128G1170 Durio zibethinus HOM05D006340 ORTHO05D007568 4.0e-109 399.8 655 66.7
ClCG02G014860 Citrullus lanatus HOM05D006340 ORTHO05D007568 8.9e-109 398.7 669 49.8
PGSC0003DMG400002763 Solanum tuberosum HOM05D006340 ORTHO05D007568 4.1e-106 389.8 670 64.3
Lsat_1_v5_gn_5_40480 Lactuca sativa HOM05D006340 ORTHO05D007568 6.0e-105 386.0 666 62.9
Aqoxy2G02721 Aquilegia oxysepala HOM05D006340 ORTHO05D007568 1.3e-104 384.8 657 65.3
Phvul.007G201700 Phaseolus vulgaris HOM05D006340 ORTHO05D007568 1.3e-104 384.8 658 63.7
Gohir.D11G284300 Gossypium hirsutum HOM05D006340 ORTHO05D007568 3.9e-104 383.3 656 65.4
Sed0017369 Sechium edule HOM05D006340 ORTHO05D007568 3.9e-104 383.3 660 63.2
Glyma.20G096700 Glycine max HOM05D006340 ORTHO05D007568 5.6e-103 379.4 657 64.4
CAN.G1076.21 Capsicum annuum HOM05D006340 ORTHO05D007568 7.3e-103 379.0 669 58.7
Nitab4.5_0001338g0100 Nicotiana tabacum HOM05D006340 ORTHO05D007568 2.1e-102 377.5 689 57.3
Glyma.10G146700 Glycine max HOM05D006340 ORTHO05D007568 1.4e-101 374.8 657 63.9
PSO761G0363 Papaver somniferum HOM05D006340 ORTHO05D007568 3.1e-101 373.6 652 62.3
Sopen01g044100 Solanum pennellii HOM05D006340 ORTHO05D007568 3.4e-100 370.2 670 63.6
MELO3C004178.2 Cucumis melo HOM05D006340 ORTHO05D007568 9.8e-100 368.6 652 54.0
Nitab4.5_0004525g0020 Nicotiana tabacum HOM05D006340 ORTHO05D007568 2.2e-99 367.5 660 58.6
ECA246G2180 Erigeron canadensis HOM05D006340 ORTHO05D007568 1.1e-98 365.2 657 64.2
Gorai.007G307200 Gossypium raimondii HOM05D006340 ORTHO05D007568 1.4e-98 364.8 656 64.6
Gohir.A08G205400 Gossypium hirsutum HOM05D006340 ORTHO05D007568 2.7e-97 360.5 655 61.4
VMungo0720G2454 Vigna mungo HOM05D006340 ORTHO05D007568 6.0e-97 359.4 665 61.8
Medtr1g084120 Medicago truncatula HOM05D006340 ORTHO05D007568 1.5e-95 354.8 650 58.5
Ca_10176_v3 Cicer arietinum L. HOM05D006340 ORTHO05D007568 9.5e-95 352.1 662 61.6
Sabra05G0021400 Salix brachista HOM05D006340 ORTHO05D007568 4.7e-94 349.7 690 40.0
AUR62006742 Chenopodium quinoa HOM05D006340 ORTHO05D007568 8.1e-94 349.0 657 61.3
Gorai.004G236300 Gossypium raimondii HOM05D006340 ORTHO05D007568 8.1e-94 349.0 655 61.2
HanXRQChr11g0324231 Helianthus annuus HOM05D006340 ORTHO05D007568 1.4e-93 348.2 660 63.5
arahy.Tifrunner.gnm1.ann1.31L8TN Arachis hypogaea HOM05D006340 ORTHO05D007568 1.2e-92 345.1 669 60.4
arahy.Tifrunner.gnm1.ann1.35WTTC Arachis hypogaea HOM05D006340 ORTHO05D007568 9.9e-92 342.0 666 60.8
PSO210G6591 Papaver somniferum HOM05D006340 ORTHO05D007568 4.9e-91 339.7 551 67.9
AUR62000387 Chenopodium quinoa HOM05D006340 ORTHO05D007568 1.6e-89 334.7 658 60.8
Gohir.D08G222500 Gossypium hirsutum HOM05D006340 ORTHO05D007568 7.8e-89 332.4 655 60.5
TPR.G2586 Trifolium pratense HOM05D006340 ORTHO05D007568 7.8e-89 332.4 668 60.8
DCAR_029344 Daucus carota HOM05D006340 ORTHO05D007568 6.6e-88 329.3 650 46.8
Lalb_Chr02g0147781 Lupinus albus HOM05D006340 ORTHO05D007568 2.5e-87 327.4 657 59.4
RcHm_v2.0_Chr3g0457201 Rosa chinensis HOM05D006340 ORTHO05D007568 2.8e-86 323.9 682 59.5
Lj5g0007706 Lotus japonicus HOM05D006340 ORTHO05D007568 1.5e-84 318.2 657 59.1
Oeu052936.1 Olea europaea HOM05D006340 ORTHO05D007568 7.6e-84 315.8 659 58.1
Phvul.001G224800 Phaseolus vulgaris HOM05D006340 ORTHO05D007568 9.9e-84 315.5 658 60.2
Os01g0300900 Oryza sativa ssp. japonica HOM05D006340 ORTHO05D007568 4.2e-82 310.1 651 53.6
Oeu053742.1 Olea europaea HOM05D006340 ORTHO05D007568 5.4e-82 309.7 670 58.4
Glyma.03G231000 Glycine max HOM05D006340 ORTHO05D007568 7.1e-82 309.3 654 60.7
ATR0693G206 Amborella trichopoda HOM05D006340 ORTHO05D007568 2.3e-80 304.3 677 57.9
Glyma.19G228200 Glycine max HOM05D006340 ORTHO05D007568 3.9e-80 303.5 657 60.3
PGR031G1700 Punica granatum HOM05D006340 ORTHO05D007568 1.9e-79 301.2 658 60.3
VMungo1383G0056 Vigna mungo HOM05D006340 ORTHO05D007568 1.6e-78 298.1 647 59.7
Eucgr.H03294 Eucalyptus grandis HOM05D006340 ORTHO05D007568 2.1e-78 297.7 652 59.7
EL10Ac4g09463 Beta vulgaris HOM05D006340 ORTHO05D007568 1.8e-77 294.7 661 59.0
FvH4_6g07501 Fragaria vesca HOM05D006340 ORTHO05D007568 1.5e-76 291.6 685 58.5
FAN02G1774 Fragaria x ananassa HOM05D006340 ORTHO05D007568 4.5e-76 290.0 683 58.7
Hund07311 Selenicereus undatus HOM05D006340 ORTHO05D007568 1.7e-75 288.1 654 58.1
FAN14G3207 Fragaria x ananassa HOM05D006340 ORTHO05D007568 2.9e-75 287.3 685 58.4
Zm00001eb130130 Zea mays HOM05D006340 ORTHO05D007568 1.9e-74 284.6 655 50.4
Zm00001eb340330 Zea mays HOM05D006340 ORTHO05D007568 2.4e-74 284.3 664 55.0
Psat6g152600 Pisum sativum HOM05D006340 ORTHO05D007568 4.2e-74 283.5 506 53.0
Ah.06g195990 Amaranthus hybridus HOM05D006340 ORTHO05D007568 1.2e-73 282.0 668 57.0
Migut.N00937 Erythranthe guttata HOM05D006340 ORTHO05D007568 6.0e-73 279.6 665 53.2
Peaxi162Scf01061g00014 Petunia axillaris HOM05D006340 ORTHO05D007568 8.1e-70 269.2 524 38.2
Solyc01g100600.4 Solanum lycopersicum HOM05D006340 ORTHO05D007568 1.1e-66 258.8 504 52.8
MSTRG.27938 Avicennia marina HOM05D006340 ORTHO05D007568 1.1e-61 242.3 361 42.1
HPP92_005420 Vanilla planifolia HOM05D006340 ORTHO05D007568 1.4e-61 241.9 680 55.7
arahy.Tifrunner.gnm1.ann1.Y7QP4L Arachis hypogaea HOM05D006340 ORTHO05D007568 1.6e-54 218.4 560 55.0
Sabra05G0020900 Salix brachista HOM05D006340 ORTHO05D007568 2.1e-54 218.0 277 47.3
FAN09G1774 Fragaria x ananassa HOM05D006340 ORTHO05D007568 3.8e-51 207.2 528 51.5
Sabra05G0020800 Salix brachista HOM05D006340 ORTHO05D007568 1.1e-50 205.7 370 64.1
Gohir.A11G274100 Gossypium hirsutum HOM05D006340 ORTHO05D007568 1.4e-50 205.3 503 52.1
THA.LOC104816894 Tarenaya hassleriana HOM05D006340 ORTHO05D007568 1.9e-50 204.9 661 44.0
SGA_v2.0_scaffold5G02892 Striga asiatica HOM05D006340 ORTHO05D007568 1.6e-49 201.8 665 41.4
SalBow3G0642 Salvia bowleyana HOM05D006340 ORTHO05D007568 1.0e-48 199.1 334 40.7
Sc16g0009070 Simmondsia chinensis HOM05D006340 ORTHO05D007568 2.3e-48 198.0 500 52.2
arahy.Tifrunner.gnm1.ann1.9H9EE5 Arachis hypogaea HOM05D006340 ORTHO05D007568 3.9e-48 197.2 560 43.8
PSO541G0443 Papaver somniferum HOM05D006340 ORTHO05D007568 6.3e-46 189.9 266 45.1
Sabra05G0009200 Salix brachista HOM05D006340 ORTHO05D007568 3.4e-44 184.1 201 87.1
Dinv24463 Davidia involucrata HOM05D006340 ORTHO05D007568 1.2e-33 149.1 177 87.6
Sabra05G0022400 Salix brachista HOM05D006340 ORTHO05D007568 6.1e-33 146.7 229 41.5
MSTRG.27937 Avicennia marina HOM05D006340 ORTHO05D007568 1.3e-30 139.0 199 72.9
CDE08G0055 Ceratophyllum demersum HOM05D006340 ORTHO05D007568 5.9e-28 130.2 492 43.9
CDE02G0367 Ceratophyllum demersum HOM05D006340 ORTHO05D007568 1.7e-27 128.6 646 35.8
FAN05G4753 Fragaria x ananassa HOM05D006340 ORTHO05D007568 3.7e-22 110.9 425 48.7
unitig_52.g17414 Utricularia gibba HOM05D006340 ORTHO05D007568 7.7e-20 103.2 229 46.3
THA.LOC104824492 Tarenaya hassleriana HOM05D006340 ORTHO05D007568 2.2e-19 101.7 64 67.2
SMO115G0101 Selaginella moellendorffii HOM05D006340 ORTHO05D007568 1.5e-18 99.0 681 31.7
MBI18_g03639_MAGBIO Magnolia biondii HOM05D006340 ORTHO05D007568 1.0e-11 76.3 73 54.8
ECA169G0006 Erigeron canadensis HOM05D006340 ORTHO05D007568 8.0e-09 66.6 48 66.7
AagrBONN_evm.TU.Sc2ySwM_117.2646 Anthoceros agrestis HOM05D001137 ORTHO05D007568 4.0e-08 64.3 198 24.2
MBI16_g10850_MAGBIO Magnolia biondii HOM05D003320 ORTHO05D003941 2.6e-07 61.6 46 56.5
CBR_g42082 Chara braunii HOM05D003320 ORTHO05D003941 7.5e-07 60.1 46 52.2
PSO017G6858 Papaver somniferum HOM05D003320 ORTHO05D003941 9.8e-07 59.7 46 50.0
PSO478G2958 Papaver somniferum HOM05D003320 ORTHO05D003941 9.8e-07 59.7 46 50.0
ECA236G0157 Erigeron canadensis HOM05D000001 ORTHO05D001967 1.3e-06 59.3 43 55.8
Sabra05G0032200 Salix brachista HOM05D001137 ORTHO05D001967 1.7e-06 58.9 43 55.8
Gohir.A13G174200 Gossypium hirsutum HOM05D001137 ORTHO05D001967 2.2e-06 58.5 43 55.8
Gohir.D13G179900 Gossypium hirsutum HOM05D001137 ORTHO05D001967 2.2e-06 58.5 43 55.8
Gorai.013G205300 Gossypium raimondii HOM05D001137 ORTHO05D001967 2.2e-06 58.5 43 55.8
HanXRQChr14g0433311 Helianthus annuus HOM05D001137 ORTHO05D001967 2.2e-06 58.5 43 53.5
Lsat_1_v5_gn_9_87501 Lactuca sativa HOM05D001137 ORTHO05D001967 2.2e-06 58.5 43 55.8
Mapoly0031s0090 Marchantia polymorpha HOM05D003320 ORTHO05D003941 2.2e-06 58.5 46 52.2
Potri.005G026900 Populus trichocarpa HOM05D001137 ORTHO05D001967 2.2e-06 58.5 43 55.8
Potri.013G018800 Populus trichocarpa HOM05D001137 ORTHO05D001967 2.2e-06 58.5 43 55.8
Sabra13G0021400 Salix brachista HOM05D001137 ORTHO05D001967 2.2e-06 58.5 43 55.8
Migut.L00877 Erythranthe guttata HOM05D003320 ORTHO05D003941 2.8e-06 58.2 46 52.2
Lj5A256T13 Lonicera japonica HOM05D001137 ORTHO05D001967 2.8e-06 58.2 43 53.5
Potri.008G031200 Populus trichocarpa HOM05D001137 ORTHO05D001967 2.8e-06 58.2 45 48.9
Sabra08G0020600 Salix brachista HOM05D001137 ORTHO05D001967 2.8e-06 58.2 45 48.9
CSS0013666 Camellia sinensis var. sinensis HOM05D003320 ORTHO05D003941 3.7e-06 57.8 46 50.0
Lsat_1_v5_gn_4_110741 Lactuca sativa HOM05D003320 ORTHO05D003941 3.7e-06 57.8 46 50.0
Nitab4.5_0002144g0040 Nicotiana tabacum HOM05D001137 ORTHO05D001967 3.7e-06 57.8 43 55.8
Potri.010G230300 Populus trichocarpa HOM05D001137 ORTHO05D001967 3.7e-06 57.8 45 48.9
Sabra10G0178700 Salix brachista HOM05D001137 ORTHO05D001967 3.7e-06 57.8 45 48.9
SMO201G0046 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 3.7e-06 57.8 46 50.0
BcaB05g24833 Brassica carinata HOM05D003320 ORTHO05D003941 4.9e-06 57.4 46 47.8
AUR62039651 Chenopodium quinoa HOM05D003320 ORTHO05D003941 4.9e-06 57.4 46 50.0
Migut.D01756 Erythranthe guttata HOM05D003320 ORTHO05D003941 4.9e-06 57.4 46 50.0
Lj5A258T11 Lonicera japonica HOM05D001137 ORTHO05D001967 4.9e-06 57.4 43 53.5
PGR031G2322 Punica granatum HOM05D001137 ORTHO05D001967 4.9e-06 57.4 43 51.2
SMO228G0070 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 4.9e-06 57.4 46 50.0
TWI12G0524 Tripterygium wilfordii HOM05D001137 ORTHO05D001967 4.9e-06 57.4 43 53.5
AUR62021532 Chenopodium quinoa HOM05D003320 ORTHO05D003941 6.3e-06 57.0 46 47.8
Eucgr.B01931 Eucalyptus grandis HOM05D001137 ORTHO05D001967 6.3e-06 57.0 43 51.2
FvH4_6g06301 Fragaria vesca HOM05D001137 ORTHO05D001967 6.3e-06 57.0 43 53.5
Glyma.17G080100 Glycine max HOM05D003320 ORTHO05D003941 6.3e-06 57.0 46 50.0
Lalb_Chr13g0302781 Lupinus albus HOM05D003320 ORTHO05D003941 6.3e-06 57.0 46 47.8
Pp3c16_23230 Physcomitrium patens HOM05D003320 ORTHO05D003941 6.3e-06 57.0 45 48.9
Psat4g047520 Pisum sativum HOM05D003320 ORTHO05D003941 6.3e-06 57.0 46 47.8
Prupe.5G207100 Prunus persica HOM05D003320 ORTHO05D003941 6.3e-06 57.0 46 50.0
Hund02571 Selenicereus undatus HOM05D003320 ORTHO05D003941 6.3e-06 57.0 46 50.0
EL10Ac5g11158 Beta vulgaris HOM05D003320 ORTHO05D003941 8.3e-06 56.6 46 47.8
CAN.G1034.50 Capsicum annuum HOM05D001137 ORTHO05D001967 8.3e-06 56.6 43 53.5
CAN.G1652.17 Capsicum annuum HOM05D001137 ORTHO05D001967 8.3e-06 56.6 43 53.5
ECA232G1579 Erigeron canadensis HOM05D003320 ORTHO05D003941 8.3e-06 56.6 46 47.8
Thhalv10019464m.g Eutrema salsugineum HOM05D003320 ORTHO05D003941 8.3e-06 56.6 46 50.0
Glyma.05G019700 Glycine max HOM05D003320 ORTHO05D003941 8.3e-06 56.6 46 50.0
MD06G1203300 Malus domestica HOM05D003320 ORTHO05D003941 8.3e-06 56.6 46 47.8
MD14G1213900 Malus domestica HOM05D003320 ORTHO05D003941 8.3e-06 56.6 46 47.8
Nn3g17480 Nelumbo nucifera HOM05D003320 ORTHO05D003941 8.3e-06 56.6 46 52.2
Psat0s2790g0120 Pisum sativum HOM05D003679 ORTHO05D004265 8.3e-06 56.6 43 53.5
Rhsim07G0183300 Rhododendron simsii HOM05D001137 ORTHO05D001967 8.3e-06 56.6 43 53.5
RcHm_v2.0_Chr3g0455341 Rosa chinensis HOM05D001137 ORTHO05D001967 8.3e-06 56.6 43 53.5
SMO199G0080 Selaginella moellendorffii HOM05D003320 ORTHO05D011006 8.3e-06 56.6 46 50.0
SMO274G0045 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 8.3e-06 56.6 46 50.0
TWI56G1154 Tripterygium wilfordii HOM05D001137 ORTHO05D001967 8.3e-06 56.6 43 53.5


User provided reference genes

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