Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010688 Camellia sinensis var. sinensis HOM05D002916 ORTHO05D003152 1.5e-56 222.6 112 100.0
Rhsim03G0074900 Rhododendron simsii HOM05D002916 ORTHO05D003152 3.3e-24 115.2 110 64.5
Prupe.7G109500 Prunus persica HOM05D002916 ORTHO05D003152 1.1e-22 110.2 112 59.8
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 1.4e-22 109.8 110 60.0
TWI53G0172 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 4.1e-22 108.2 112 51.8
Dinv21202 Davidia involucrata HOM05D002916 ORTHO05D003152 5.0e-20 101.3 83 68.7
QL05p034193 Quercus lobata HOM05D002916 ORTHO05D003152 5.0e-20 101.3 111 54.1
Actinidia05426 Actinidia chinensis HOM05D002916 ORTHO05D003152 2.5e-19 99.0 114 55.3
TWI74G0225 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 4.2e-19 98.2 112 50.0
MD12G1036700 Malus domestica HOM05D002916 ORTHO05D003152 9.4e-19 97.1 114 50.9
Cpa.g.sc5.15 Carica papaya HOM05D002916 ORTHO05D003152 1.8e-17 92.8 114 52.6
FAN02G4366 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.8e-17 92.8 113 53.1
Lj1g0017693 Lotus japonicus HOM05D002916 ORTHO05D003152 1.8e-17 92.8 114 49.1
Manes.08G025700 Manihot esculenta HOM05D002916 ORTHO05D003152 2.3e-17 92.4 112 52.7
Oeu047865.1 Olea europaea HOM05D002916 ORTHO05D003152 3.0e-17 92.0 112 48.2
FvH4_6g18810 Fragaria vesca HOM05D002916 ORTHO05D003152 8.8e-17 90.5 113 52.2
FAN14G1204 Fragaria x ananassa HOM05D002916 ORTHO05D003152 8.8e-17 90.5 113 52.2
RcHm_v2.0_Chr3g0473821 Rosa chinensis HOM05D002916 ORTHO05D003152 1.5e-16 89.7 113 51.3
COL.COLO4_29727 Corchorus olitorius HOM05D002916 ORTHO05D003152 2.6e-16 89.0 114 50.0
Potri.016G079700 Populus trichocarpa HOM05D002916 ORTHO05D003152 3.3e-16 88.6 113 49.6
Glyma.03G196300 Glycine max HOM05D002916 ORTHO05D003152 4.4e-16 88.2 112 49.1
FAN05G3486 Fragaria x ananassa HOM05D002916 ORTHO05D003152 7.5e-16 87.4 113 50.4
Oeu056929.1 Olea europaea HOM05D002916 ORTHO05D003152 7.5e-16 87.4 111 46.8
Actinidia31270 Actinidia chinensis HOM05D002916 ORTHO05D003152 9.7e-16 87.0 112 52.7
FAN05G4254 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.3e-15 86.7 114 50.9
Cfa001906 Carpinus fangiana HOM05D002916 ORTHO05D003152 1.7e-15 86.3 108 51.9
Lalb_Chr01g0018131 Lupinus albus HOM05D002916 ORTHO05D003152 3.7e-15 85.1 106 50.9
Potri.006G213100 Populus trichocarpa HOM05D002916 ORTHO05D003152 3.7e-15 85.1 113 47.8
Atru.chr8.1530 Acer truncatum HOM05D002916 ORTHO05D003152 6.3e-15 84.3 116 47.4
Haze_16634 Corylus avellana HOM05D002916 ORTHO05D003152 6.3e-15 84.3 109 51.4
Haze_16636 Corylus avellana HOM05D002916 ORTHO05D003152 6.3e-15 84.3 109 51.4
Phvul.001G190500 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 1.1e-14 83.6 114 49.1
Ca_09009_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 1.4e-14 83.2 110 48.2
VMungo1383G0514 Vigna mungo HOM05D002916 ORTHO05D003152 1.8e-14 82.8 114 49.1
Atru.chr8.1528 Acer truncatum HOM05D002916 ORTHO05D003152 3.1e-14 82.0 117 47.9
TPR.G23310 Trifolium pratense HOM05D002916 ORTHO05D003152 3.1e-14 82.0 106 50.9
Glyma.19G194943 Glycine max HOM05D002916 ORTHO05D003152 4.1e-14 81.6 109 46.8
CiPaw.01G252200 Carya illinoinensis HOM05D002916 ORTHO05D003152 5.3e-14 81.3 108 49.1
Thecc.05G089800 Theobroma cacao HOM05D002916 ORTHO05D003152 7.0e-14 80.9 110 50.0
Ciclev10012941m.g Citrus clementina HOM05D002916 ORTHO05D003152 9.1e-14 80.5 114 46.5
Duzib093G0112 Durio zibethinus HOM05D002916 ORTHO05D003152 1.2e-13 80.1 110 51.8
Nn6g34891 Nelumbo nucifera HOM05D002916 ORTHO05D003152 1.6e-13 79.7 110 50.0
Duzib128G0442 Durio zibethinus HOM05D002916 ORTHO05D003152 3.5e-13 78.6 105 52.4
Manes.09G055000 Manihot esculenta HOM05D002916 ORTHO05D003152 3.5e-13 78.6 112 47.3
DCAR_009166 Daucus carota HOM05D002916 ORTHO05D003152 5.9e-13 77.8 112 45.5
Hma1.2p1_0084F.1_g043850 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 5.9e-13 77.8 90 46.7
Hma1.2p1_0820F.1_g223855 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 5.9e-13 77.8 90 46.7
Sabra16G0087700 Salix brachista HOM05D002916 ORTHO05D003152 7.7e-13 77.4 113 46.9
Gohir.D09G135200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.0e-12 77.0 117 44.4
Ciclev10013433m.g Citrus clementina HOM05D002916 ORTHO05D003152 2.2e-12 75.9 116 45.7
Nn2g14164 Nelumbo nucifera HOM05D002916 ORTHO05D003152 2.2e-12 75.9 111 45.9
Sabra06G0164100 Salix brachista HOM05D002916 ORTHO05D003152 2.2e-12 75.9 70 58.6
Gohir.A04G062400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 2.9e-12 75.5 116 44.8
Glyma.10G072400 Glycine max HOM05D002916 ORTHO05D003152 3.8e-12 75.1 113 46.9
Gohir.D04G099400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 3.8e-12 75.1 113 46.9
Sabra16G0085600 Salix brachista HOM05D002916 ORTHO05D003152 3.8e-12 75.1 113 46.0
Gohir.D01G195600 Gossypium hirsutum HOM05D002916 ORTHO05D003152 5.0e-12 74.7 112 46.4
Gorai.009G402300 Gossypium raimondii HOM05D002916 ORTHO05D003152 5.0e-12 74.7 113 46.9
Gohir.A07G134900 Gossypium hirsutum HOM05D002916 ORTHO05D003152 6.5e-12 74.3 114 43.9
Gorai.006G155100 Gossypium raimondii HOM05D002916 ORTHO05D003152 8.5e-12 73.9 114 45.6
Medtr7g104680 Medicago truncatula HOM05D002916 ORTHO05D003152 1.5e-11 73.2 103 46.6
Gorai.002G239800 Gossypium raimondii HOM05D002916 ORTHO05D003152 1.9e-11 72.8 112 47.3
AL3G21460 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 2.5e-11 72.4 123 43.1
AT3G10120 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 2.5e-11 72.4 127 42.5
CANSAT64G0492 Cannabis sativa HOM05D002916 ORTHO05D003152 2.5e-11 72.4 136 44.1
MD14G1023400 Malus domestica HOM05D002916 ORTHO05D003152 2.5e-11 72.4 113 40.7
Thhalv10021626m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 4.2e-11 71.6 130 38.5
PGR142G0380 Punica granatum HOM05D002916 ORTHO05D003152 4.2e-11 71.6 125 39.2
Sp3g08400 Schrenkiella parvula HOM05D002916 ORTHO05D003152 5.5e-11 71.2 122 40.2
TAR623G0367 Trochodendron aralioides HOM05D002916 ORTHO05D003152 5.5e-11 71.2 112 45.5
BolC5t34456H Brassica oleracea HOM05D002916 ORTHO05D003152 7.2e-11 70.9 114 41.2
Gohir.A05G000100 Gossypium hirsutum HOM05D002916 ORTHO05D003152 9.4e-11 70.5 117 41.0
Aqoxy4G02773 Aquilegia oxysepala HOM05D002916 ORTHO05D003152 1.2e-10 70.1 107 47.7
C05p58000 Brassica napus HOM05D002916 ORTHO05D003152 1.2e-10 70.1 111 41.4
Carub.0008s0814 Capsella rubella HOM05D002916 ORTHO05D003152 1.2e-10 70.1 130 39.2
CARHR084600 Cardamine hirsuta HOM05D002916 ORTHO05D003152 1.2e-10 70.1 125 44.0
CsaV3_6G040690 Cucumis sativus L. HOM05D002916 ORTHO05D003152 2.7e-10 68.9 111 40.5
BcaNung06240 Brassica carinata HOM05D002916 ORTHO05D003152 3.6e-10 68.6 111 39.6
A05p38970 Brassica napus HOM05D002916 ORTHO05D003152 3.6e-10 68.6 111 40.5
Glyma.13G153800 Glycine max HOM05D002916 ORTHO05D003152 3.6e-10 68.6 109 45.0
Peaxi162Scf00404g00102 Petunia axillaris HOM05D002916 ORTHO05D003152 4.7e-10 68.2 114 39.5
SalBow4G3036 Salvia bowleyana HOM05D002916 ORTHO05D003152 4.7e-10 68.2 69 55.1
BraA05t22688Z Brassica rapa HOM05D002916 ORTHO05D003152 6.1e-10 67.8 111 39.6
DCAR_013392 Daucus carota HOM05D002916 ORTHO05D003152 1.0e-09 67.0 110 41.8
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 1.0e-09 67.0 60 58.3
AUR62028520 Chenopodium quinoa HOM05D002916 ORTHO05D003152 1.4e-09 66.6 114 43.9
MSTRG.26638 Avicennia marina HOM05D002916 ORTHO05D003152 3.0e-09 65.5 113 40.7
Carub.0006s0284 Capsella rubella HOM05D002916 ORTHO05D003152 3.0e-09 65.5 128 37.5
MELO3C024547.2 Cucumis melo HOM05D002916 ORTHO05D003152 3.0e-09 65.5 113 38.9
Cc06_g05820 Coffea canephora HOM05D002916 ORTHO05D003152 4.0e-09 65.1 112 42.0
DCAR_013390 Daucus carota HOM05D002916 ORTHO05D003152 4.0e-09 65.1 110 43.6
Gohir.A01G206200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 4.0e-09 65.1 112 45.5
Gohir.A09G139400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 4.0e-09 65.1 64 56.2
Gohir.A11G003500 Gossypium hirsutum HOM05D002916 ORTHO05D003152 4.0e-09 65.1 109 40.4
Eucgr.K02033 Eucalyptus grandis HOM05D002916 ORTHO05D003152 8.8e-09 63.9 127 44.9
Lsat_1_v5_gn_8_77181 Lactuca sativa HOM05D002916 ORTHO05D003152 1.5e-08 63.2 83 48.2
BolC1t05420H Brassica oleracea HOM05D002916 ORTHO05D003152 2.0e-08 62.8 123 37.4
ECA236G4089 Erigeron canadensis HOM05D002916 ORTHO05D003152 2.0e-08 62.8 114 41.2
BcaNung05911 Brassica carinata HOM05D002916 ORTHO05D003152 3.4e-08 62.0 121 38.0
Nitab4.5_0003610g0010 Nicotiana tabacum HOM05D002916 ORTHO05D003152 3.4e-08 62.0 109 41.3
BcaC09g48115 Brassica carinata HOM05D002916 ORTHO05D003152 4.4e-08 61.6 127 37.8
DCAR_013391 Daucus carota HOM05D002916 ORTHO05D003152 4.4e-08 61.6 109 39.4
BcaB04g21229 Brassica carinata HOM05D002916 ORTHO05D003152 5.7e-08 61.2 126 37.3
CARHR209370 Cardamine hirsuta HOM05D002916 ORTHO05D003152 5.7e-08 61.2 133 34.6
AL6G13470 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 7.5e-08 60.8 131 38.2
DCAR_007755 Daucus carota HOM05D002916 ORTHO05D003152 7.5e-08 60.8 110 38.2
AUR62006186 Chenopodium quinoa HOM05D002916 ORTHO05D003152 9.8e-08 60.5 114 41.2
BcaC06g32092 Brassica carinata HOM05D002916 ORTHO05D003152 1.3e-07 60.1 134 35.1
DCAR_013389 Daucus carota HOM05D002916 ORTHO05D003152 2.2e-07 59.3 110 39.1
Sed0018474 Sechium edule HOM05D002916 ORTHO05D003152 2.8e-07 58.9 114 36.0
C03p01810 Brassica napus HOM05D002916 ORTHO05D003152 3.7e-07 58.5 139 36.0
Eucgr.A02661 Eucalyptus grandis HOM05D002916 ORTHO05D003152 3.7e-07 58.5 92 38.0
AT5G03890 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 4.8e-07 58.2 131 38.2
A10p32230 Brassica napus HOM05D002916 ORTHO05D003152 4.8e-07 58.2 128 32.8
BraA10t45266Z Brassica rapa HOM05D002916 ORTHO05D003152 4.8e-07 58.2 128 32.8
Migut.L01781 Erythranthe guttata HOM05D002916 ORTHO05D003152 4.8e-07 58.2 120 35.8
Ah.15g090860 Amaranthus hybridus HOM05D002916 ORTHO05D003152 8.3e-07 57.4 70 51.4
A03p01480 Brassica napus HOM05D002916 ORTHO05D003152 1.1e-06 57.0 136 32.4
BraA03t09526Z Brassica rapa HOM05D002916 ORTHO05D003152 1.1e-06 57.0 136 32.4
A01p42040 Brassica napus HOM05D002916 ORTHO05D003152 1.8e-06 56.2 89 42.7
BraA01t04273Z Brassica rapa HOM05D002916 ORTHO05D003152 1.8e-06 56.2 89 42.7
Migut.J01032 Erythranthe guttata HOM05D002916 ORTHO05D003152 2.4e-06 55.8 91 39.6
Thhalv10014801m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 2.4e-06 55.8 133 36.8
Lsat_1_v5_gn_5_164861 Lactuca sativa HOM05D002916 ORTHO05D003152 2.4e-06 55.8 111 41.4
PGSC0003DMG400008880 Solanum tuberosum HOM05D002916 ORTHO05D003152 2.4e-06 55.8 147 27.9
PGR004G1189 Punica granatum HOM05D002916 ORTHO05D003152 3.1e-06 55.5 115 35.7
C09p73040 Brassica napus HOM05D002916 ORTHO05D003152 5.4e-06 54.7 128 32.0
BolC9t60038H Brassica oleracea HOM05D002916 ORTHO05D003152 5.4e-06 54.7 128 32.0
SGA_v2.0_scaffold184G39965 Striga asiatica HOM05D002916 ORTHO05D003152 9.1e-06 53.9 74 48.6


User provided reference genes

Program Settings