Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0010684 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D006651 2.2e-48 195.3 95 100.0
CSS0022482 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D006651 1.1e-47 193.0 95 97.9
CSS0042652 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D006651 1.1e-47 193.0 95 97.9
CSS0019104 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D006651 1.5e-46 189.1 95 95.8
CSS0012985 Camellia sinensis var. sinensis HOM05D000076 ORTHO05D006651 1.7e-45 185.7 95 93.7
Dinv38105 Davidia involucrata HOM05D000076 ORTHO05D006651 1.2e-43 179.5 95 89.5
TAR383G0753 Trochodendron aralioides HOM05D000076 ORTHO05D006651 4.6e-43 177.6 95 88.4
MD17G1208100 Malus domestica HOM05D000076 ORTHO05D006651 7.9e-43 176.8 95 86.3
Ciclev10025636m.g Citrus clementina HOM05D000076 ORTHO05D006651 1.4e-42 176.0 95 87.4
Actinidia08805 Actinidia chinensis HOM05D000076 ORTHO05D006651 1.8e-42 175.6 95 87.4
vmacro16906 Vaccinium macrocarpon HOM05D000076 ORTHO05D006651 2.3e-42 175.3 95 88.4
COL.COLO4_12922 Corchorus olitorius HOM05D000076 ORTHO05D006651 3.0e-42 174.9 95 85.3
Hma1.2p1_0515F.1_g170160 Hydrangea macrophylla HOM05D000076 ORTHO05D006651 3.9e-42 174.5 95 86.3
PSO170G4244 Papaver somniferum HOM05D000076 ORTHO05D006651 3.9e-42 174.5 95 85.3
PSO455G0226 Papaver somniferum HOM05D000076 ORTHO05D006651 3.9e-42 174.5 95 85.3
Thecc.06G069500 Theobroma cacao HOM05D000076 ORTHO05D006651 3.9e-42 174.5 95 85.3
RcHm_v2.0_Chr2g0136181 Rosa chinensis HOM05D000076 ORTHO05D006651 6.7e-42 173.7 95 85.3
QL07p005211 Quercus lobata HOM05D000076 ORTHO05D006651 8.8e-42 173.3 94 85.1
CiPaw.01G245600 Carya illinoinensis HOM05D000076 ORTHO05D006651 1.5e-41 172.6 95 84.2
Haze_16530 Corylus avellana HOM05D000076 ORTHO05D006651 2.0e-41 172.2 95 84.2
Rhsim12G0192300 Rhododendron simsii HOM05D000076 ORTHO05D006651 2.0e-41 172.2 95 85.3
Duzib235G1052 Durio zibethinus HOM05D000076 ORTHO05D006651 4.4e-41 171.0 95 85.3
Nn8g39420 Nelumbo nucifera HOM05D000076 ORTHO05D006651 5.7e-41 170.6 95 84.2
PGR102G0049 Punica granatum HOM05D000076 ORTHO05D006651 5.7e-41 170.6 95 84.2
Lj5A69T35 Lonicera japonica HOM05D000076 ORTHO05D006651 7.4e-41 170.2 95 83.2
Phvul.010G154600 Phaseolus vulgaris HOM05D000076 ORTHO05D006651 7.4e-41 170.2 95 85.3
FAN05G0493 Fragaria x ananassa HOM05D000076 ORTHO05D006651 9.7e-41 169.9 95 83.2
Gohir.A06G115000 Gossypium hirsutum HOM05D000076 ORTHO05D006651 9.7e-41 169.9 95 84.2
Prupe.3G082600 Prunus persica HOM05D000076 ORTHO05D006651 2.2e-40 168.7 95 85.3
Medtr4g010990 Medicago truncatula HOM05D000076 ORTHO05D006651 2.8e-40 168.3 95 82.1
arahy.Tifrunner.gnm1.ann1.PKV768 Arachis hypogaea HOM05D000076 ORTHO05D006651 3.7e-40 167.9 95 82.1
Gohir.D06G119800 Gossypium hirsutum HOM05D000076 ORTHO05D006651 3.7e-40 167.9 95 84.2
Gorai.010G137800 Gossypium raimondii HOM05D000076 ORTHO05D006651 3.7e-40 167.9 95 84.2
Lj3g0009412 Lotus japonicus HOM05D000076 ORTHO05D006651 3.7e-40 167.9 95 80.0
Lalb_Chr01g0012441 Lupinus albus HOM05D000076 ORTHO05D006651 3.7e-40 167.9 95 83.2
VMungo0331G1252 Vigna mungo HOM05D000076 ORTHO05D006651 3.7e-40 167.9 95 83.2
Nitab4.5_0001764g0030 Nicotiana tabacum HOM05D000076 ORTHO05D006651 4.8e-40 167.5 95 83.2
CAN.G407.99 Capsicum annuum HOM05D000076 ORTHO05D006651 6.3e-40 167.2 95 82.1
Manes.11G054200 Manihot esculenta HOM05D000076 ORTHO05D006651 6.3e-40 167.2 95 81.1
arahy.Tifrunner.gnm1.ann1.BAYB07 Arachis hypogaea HOM05D000076 ORTHO05D006651 8.2e-40 166.8 95 82.1
Peaxi162Scf00332g00759 Petunia axillaris HOM05D000076 ORTHO05D006651 8.2e-40 166.8 95 82.1
TPR.G38688 Trifolium pratense HOM05D000076 ORTHO05D006651 8.2e-40 166.8 95 81.1
Ca_20433_v3 Cicer arietinum L. HOM05D000076 ORTHO05D006651 1.1e-39 166.4 95 80.0
Ca_30892_v3 Cicer arietinum L. HOM05D000076 ORTHO05D006651 1.1e-39 166.4 95 80.0
FvH4_6g30130 Fragaria vesca HOM05D000076 ORTHO05D006651 1.1e-39 166.4 95 81.1
Nitab4.5_0010254g0070 Nicotiana tabacum HOM05D000076 ORTHO05D006651 1.4e-39 166.0 95 82.1
Atru.chr1.3044 Acer truncatum HOM05D000076 ORTHO05D006651 1.8e-39 165.6 95 80.0
Nn2g12010 Nelumbo nucifera HOM05D000076 ORTHO05D006651 2.4e-39 165.2 95 78.9
MSTRG.11126 Avicennia marina HOM05D000076 ORTHO05D006651 4.1e-39 164.5 95 83.2
ECA232G2965 Erigeron canadensis HOM05D000076 ORTHO05D006651 4.1e-39 164.5 95 81.1
GSVIVG01017295001 Vitis vinifera HOM05D000076 ORTHO05D006651 4.1e-39 164.5 95 83.2
Cc04_g04180 Coffea canephora HOM05D000076 ORTHO05D006651 5.3e-39 164.1 95 82.1
Migut.I00789 Erythranthe guttata HOM05D000076 ORTHO05D006651 5.3e-39 164.1 95 82.1
Psat7g256240 Pisum sativum HOM05D000076 ORTHO05D006651 5.3e-39 164.1 95 80.0
PGSC0003DMG400000612 Solanum tuberosum HOM05D000076 ORTHO05D006651 5.3e-39 164.1 95 80.0
CiPaw.03G185800 Carya illinoinensis HOM05D000076 ORTHO05D006651 6.9e-39 163.7 95 82.1
CiPaw.03G228600 Carya illinoinensis HOM05D000076 ORTHO05D006651 6.9e-39 163.7 95 82.1
TWI75G0213 Tripterygium wilfordii HOM05D000076 ORTHO05D006651 6.9e-39 163.7 95 82.1
Sopen03g035460 Solanum pennellii HOM05D000076 ORTHO05D006651 9.1e-39 163.3 95 78.9
DCAR_025498 Daucus carota HOM05D000076 ORTHO05D006651 2.0e-38 162.2 95 80.0
HanXRQChr09g0274961 Helianthus annuus HOM05D000076 ORTHO05D006651 2.0e-38 162.2 95 80.0
SGA_v2.0_scaffold5G02674 Striga asiatica HOM05D000076 ORTHO05D006651 2.0e-38 162.2 95 82.1
CiPaw.02G155700 Carya illinoinensis HOM05D000076 ORTHO05D006651 2.6e-38 161.8 95 80.0
Glyma.07G031500 Glycine max HOM05D000076 ORTHO05D006651 2.6e-38 161.8 95 80.0
CiPaw.03G141200 Carya illinoinensis HOM05D000076 ORTHO05D006651 3.4e-38 161.4 95 81.1
CiPaw.11G039200 Carya illinoinensis HOM05D000076 ORTHO05D006651 3.4e-38 161.4 95 81.1
Lsat_1_v5_gn_4_106080 Lactuca sativa HOM05D000076 ORTHO05D006651 4.5e-38 161.0 95 77.9
Rhsim01G0208700 Rhododendron simsii HOM05D000076 ORTHO05D006651 4.5e-38 161.0 95 82.1
CiPaw.07G036600 Carya illinoinensis HOM05D000076 ORTHO05D006651 5.9e-38 160.6 95 81.1
RcHm_v2.0_Chr2g0136251 Rosa chinensis HOM05D000076 ORTHO05D006651 5.9e-38 160.6 95 81.1
ClCG09G002820 Citrullus lanatus HOM05D000076 ORTHO05D006651 7.7e-38 160.2 95 81.1
Aqoxy7G02155 Aquilegia oxysepala HOM05D000076 ORTHO05D006651 1.0e-37 159.8 95 81.1
CsaV3_7G032510 Cucumis sativus L. HOM05D003484 ORTHO05D006651 1.0e-37 159.8 95 82.1
MELO3C023412.2 Cucumis melo HOM05D000076 ORTHO05D006651 1.3e-37 159.5 95 81.1
Oeu015242.1 Olea europaea HOM05D000076 ORTHO05D006651 1.3e-37 159.5 95 81.1
Eucgr.F02536 Eucalyptus grandis HOM05D000076 ORTHO05D006651 1.7e-37 159.1 95 77.9
Glyma.08G211300 Glycine max HOM05D000076 ORTHO05D006651 2.2e-37 158.7 95 77.9
Hund00540 Selenicereus undatus HOM05D000076 ORTHO05D006651 2.2e-37 158.7 95 76.8
AUR62011541 Chenopodium quinoa HOM05D000076 ORTHO05D006651 2.9e-37 158.3 95 74.7
AUR62016360 Chenopodium quinoa HOM05D000076 ORTHO05D006651 2.9e-37 158.3 95 74.7
Sed0025008 Sechium edule HOM05D000076 ORTHO05D006651 3.8e-37 157.9 95 77.9
BcaB06g25673 Brassica carinata HOM05D000076 ORTHO05D006651 5.0e-37 157.5 95 78.9
unitig_0.g1120 Utricularia gibba HOM05D000076 ORTHO05D006651 5.0e-37 157.5 95 78.9
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 8.5e-37 156.8 95 78.9
BraA05t22193Z Brassica rapa HOM05D000076 ORTHO05D006651 8.5e-37 156.8 95 78.9
EL10Ac9g21920 Beta vulgaris HOM05D000076 ORTHO05D006651 1.1e-36 156.4 94 78.7
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 1.1e-36 156.4 95 77.9
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 1.1e-36 156.4 95 77.9
BolC5t33820H Brassica oleracea HOM05D000076 ORTHO05D006651 1.1e-36 156.4 95 77.9
Ah.01g020760 Amaranthus hybridus HOM05D000076 ORTHO05D006651 1.9e-36 155.6 95 75.8
Potri.003G062600 Populus trichocarpa HOM05D000076 ORTHO05D006651 1.9e-36 155.6 93 75.3
THA.LOC104815535 Tarenaya hassleriana HOM05D000076 ORTHO05D006651 2.5e-36 155.2 95 74.7
CDE02G3459 Ceratophyllum demersum HOM05D000076 ORTHO05D006651 3.2e-36 154.8 95 75.8
Sc12g0008690 Simmondsia chinensis HOM05D000076 ORTHO05D006651 4.2e-36 154.5 95 75.8
Aa31LG8G2920 Aethionema arabicum HOM05D000076 ORTHO05D006651 7.2e-36 153.7 95 74.7
Sabra03G0036400 Salix brachista HOM05D000076 ORTHO05D006651 1.2e-35 152.9 93 74.2
Sp3g14030 Schrenkiella parvula HOM05D000076 ORTHO05D006651 2.7e-35 151.8 95 75.8
Thhalv10020754m.g Eutrema salsugineum HOM05D000076 ORTHO05D006651 3.6e-35 151.4 95 75.8
BraA06t23390Z Brassica rapa HOM05D000076 ORTHO05D006651 7.9e-35 150.2 95 72.6
Sabra01G0140000 Salix brachista HOM05D000076 ORTHO05D006651 7.9e-35 150.2 95 72.6
TWI12G0292 Tripterygium wilfordii HOM05D000076 ORTHO05D006651 3.0e-34 148.3 95 71.6
AL1G60910 Arabidopsis lyrata HOM05D000076 ORTHO05D006651 3.9e-34 147.9 95 72.6
AT1G52630 Arabidopsis thaliana HOM05D000076 ORTHO05D006651 3.9e-34 147.9 95 72.6
Thhalv10011490m.g Eutrema salsugineum HOM05D000076 ORTHO05D006651 3.9e-34 147.9 95 72.6
BcaC08g43438 Brassica carinata HOM05D000076 ORTHO05D006651 1.1e-33 146.4 95 71.6
A06p01720 Brassica napus HOM05D000076 ORTHO05D006651 1.1e-33 146.4 95 71.6
C06p08060 Brassica napus HOM05D000076 ORTHO05D006651 1.1e-33 146.4 95 71.6
BolC6t35889H Brassica oleracea HOM05D000076 ORTHO05D006651 1.1e-33 146.4 95 71.6
Carub.0001s4162 Capsella rubella HOM05D000076 ORTHO05D006651 2.6e-33 145.2 95 71.6
Potri.001G171500 Populus trichocarpa HOM05D000076 ORTHO05D006651 4.4e-33 144.4 91 71.4
CARHR042750 Cardamine hirsuta HOM05D000076 ORTHO05D006651 5.7e-33 144.1 96 71.9
HPP92_025294 Vanilla planifolia HOM05D000076 ORTHO05D006651 5.7e-33 144.1 95 68.4
CDE04G3285 Ceratophyllum demersum HOM05D002557 ORTHO05D006651 7.4e-33 143.7 90 73.3
Sp1g39180 Schrenkiella parvula HOM05D000076 ORTHO05D006651 7.4e-33 143.7 95 71.6
MD09G1220000 Malus domestica HOM05D000076 ORTHO05D006651 1.7e-32 142.5 84 78.6
HPP92_025297 Vanilla planifolia HOM05D000076 ORTHO05D006651 6.3e-32 140.6 95 67.4
Zm00001eb037030 Zea mays HOM05D000076 ORTHO05D006651 7.0e-31 137.1 96 65.6
Manes.04G115500 Manihot esculenta HOM05D000076 ORTHO05D006651 7.7e-30 133.7 95 72.6
Os08g0537900 Oryza sativa ssp. japonica HOM05D000076 ORTHO05D006651 7.7e-30 133.7 96 64.6
SHI20604 Sapria himalayana HOM05D000076 ORTHO05D006651 2.5e-28 128.6 95 66.3
BcaB06g25679 Brassica carinata HOM05D000076 ORTHO05D006651 8.0e-27 123.6 85 69.4
Prupe.4G278800 Prunus persica HOM05D000076 ORTHO05D006651 7.0e-23 110.5 68 77.9
SMO116G0314 Selaginella moellendorffii HOM05D000076 ORTHO05D006651 1.6e-22 109.4 90 55.6
QL08p008496 Quercus lobata HOM05D000076 ORTHO05D006651 2.7e-19 98.6 61 70.5
AagrBONN_evm.TU.Sc2ySwM_369.259 Anthoceros agrestis HOM05D000076 ORTHO05D006651 2.3e-18 95.5 92 51.1
Eucgr.F02109 Eucalyptus grandis HOM05D000076 ORTHO05D006651 6.3e-16 87.4 51 78.4
Pp3c3_27530 Physcomitrium patens HOM05D000076 ORTHO05D006651 2.0e-14 82.4 90 41.1
Solyc03g116550.4 Solanum lycopersicum HOM05D000076 ORTHO05D006651 2.9e-13 78.6 43 83.7
Medtr4g011150 Medicago truncatula HOM05D000076 ORTHO05D006651 1.1e-12 76.6 56 58.9
ATR0807G240 Amborella trichopoda HOM05D000076 ORTHO05D006651 2.5e-12 75.5 46 78.3
Nitab4.5_0004236g0090 Nicotiana tabacum HOM05D000076 ORTHO05D006651 5.7e-09 64.3 65 50.8
Medtr8g094680 Medicago truncatula HOM05D000076 ORTHO05D260553 1.7e-08 62.8 46 60.9
FvH4_4g29250 Fragaria vesca HOM05D000076 ORTHO05D000953 2.7e-06 55.5 57 49.1
FAN07G0992 Fragaria x ananassa HOM05D000076 ORTHO05D000953 2.7e-06 55.5 57 49.1
FAN12G1133 Fragaria x ananassa HOM05D000076 ORTHO05D000953 2.7e-06 55.5 57 49.1
FAN17G2881 Fragaria x ananassa HOM05D000076 ORTHO05D000953 2.7e-06 55.5 57 49.1
FAN22G2395 Fragaria x ananassa HOM05D000076 ORTHO05D000953 2.7e-06 55.5 57 49.1
RcHm_v2.0_Chr4g0437301 Rosa chinensis HOM05D000076 ORTHO05D000953 2.7e-06 55.5 57 49.1
Medtr2g059350 Medicago truncatula HOM05D000076 ORTHO05D000953 4.5e-06 54.7 78 39.7
Prupe.1G294000 Prunus persica HOM05D000076 ORTHO05D000953 4.5e-06 54.7 57 49.1
Hma1.2p1_0448F.1_g154840 Hydrangea macrophylla HOM05D000076 ORTHO05D000953 5.9e-06 54.3 80 40.0
FvH4_6g46300 Fragaria vesca HOM05D000076 ORTHO05D000953 7.8e-06 53.9 78 41.0
FAN05G0962 Fragaria x ananassa HOM05D000076 ORTHO05D000953 7.8e-06 53.9 78 41.0
FAN09G3413 Fragaria x ananassa HOM05D000076 ORTHO05D000953 7.8e-06 53.9 78 41.0
FAN14G5302 Fragaria x ananassa HOM05D000076 ORTHO05D000953 7.8e-06 53.9 78 41.0


User provided reference genes

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